Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g21541 | OGI:08036480 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:12830882-12836049 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCGCTCCTCCACCCGCAGCCGCGGAGACCGCGCGCTTCTCTTCCTCGCTCACTCCTCCCAGCGTCCTCGCAGGAGCGACTCCCCACTGCCGCCGCAGCCATCCTCCTCGCTCGCTCCTCCTTCTCCCCGCTGCTGCCGCTACGCCGCGCCCTAGCCGGAGCCGCCGCGGCCGTCCTCCTTCTTCCCCACCGCCGCGCCCCGCTCTTCCCCACCTCCTTCTTCCCAGATCGTGCTTCTCCCACTCGGATCAGCCGCCGCCGGAGCCGACTTTGGCCCCTTCTCCGCCGCCGGAACCAACATCGACCTCAGCCCGCGGCCGTCCTTCTTCTTCCCCACCGCCGCGGCTGTCCTCCTCACGGGCTTCTCCTCTGCCCCGCTGCCGGCGCTACGCCGCGTCCTCGCCGGAGCCGCCGCCGTATCGTTCTTCTCCCACTCGGACCCGTACGAATCTCCGTCCTCCACCTTCGCCGCTCGCCCCTCTCTCTCTCTCTTCGCCCGCGACTCCATCCCCTCCCTAGCCGCTGCCCTCACGGCCTCGCCATCGCCAATCCCTCCATGCCTTCTCGGGCTCATGGTGGAGGGGCAGGGGCTGCCTTCGGTGGAGAGTTACAGCCGATCCCCCATCAACAGCGCCCGCGAGTGAGGATCAAGCCGCCGTTATCGAGCCAAATCAGGCGGACAAGCTGAGCTGACGGTGTATACGGGAGGTAGAGATGGACACCAGCGACGGCGGTGCGTTCGATAAGTGACCTTGATAGCATGTGGCGGGAGAGGATCGGCGGTGGCGCCTGAGATGTCGACAGGGAACATGCTTGCAGATCTCTTTTCCATCAATGGCTACCACGAGGGTCTTCCCATGGTGCTTGCCCACATTGCCACCTACGCCGCGCTTGCTCTTCCCCCAACTGTCGACGCCCGGCACCATAGCCGCCGAGGCCAAGAAGATCTGGACCATCTGGTCATCTTTGGCGCCATGAATCCGGCCACTTCCGCCAACGGGGCTGCTGCCATCATCGACCCGCCGTCTAGCACGGTTCAATGGGCATCATCACACGCCTATGCTTCATGTCCTTCTTTACTAGCAGGTTAAAAAATCCTTAAGGATTTATTTGCTAATCATCTTTACCTAATACATATCTGGTATAATTCTTCGTTGCCTTGGTTTTATTACTGTATTTTTAGGTCATCAGGTGGAGAAGCCATCCATATGCTAAATAGGTCTCAAGATAGGAGTGAGCAGCAAGTTCGGTTTTCATTGGGCCATACTCCTCATCTGAACAAACAGGTTTACATAGTTTACATAGTTGTTTTACAGCCTATAATATGAAAAAAATTATTGGATAGCTTGTTATTGTGAGGTGATCTTGTTTGTTGTTGAATGATATTAATTGATTGGTTGTTTTATTAGGAATTCTCAGCAGGTGTGTTGATTTCTATTTTGCTTAATTTTGTTTAATTCTGCAGCCATCATGGCCCAGGGAGTATAAAGTTGAATAGAGCCAATGGATGCTGTGGCGGTTGCGATGACGGTAGCTCAACAATGGCACTGGGCGTGCACTGGGAGGTATGCTTAAAGGAGAGTGTTGTAGCATTTGCATTTTTGGCAGTTAAGTTTGAGCACTGGATACAAATCATTGATCTTCTAGAAGTAACATTTTGATTCCTGCAAACTAATGCGGCACCTCTGTCTCAACACTGTCATCAGGTCTGCTCCCCAGTTTGGCACTCCTTGTGGTAAGGGAAACGAGGAGAAAGAAATGACGACCAACAGGTTGTGAAAGACACCAACGACCTGCATCACGCAAATAAACAGGTATTTATTATTTTGGTTAGTTTAGTTTGTTGTGCAGACATTAATTAAGGCTAGGGGTAGGGGTTGAAGACTTATGGATGAATCCGGTACCGTAACCTTCACATTTGACCGTTCATTAGTAGCTAAATGGACGGCTACCATGCATCTGATACATCAATCTGTAGGCTAATGACATATCTTGAGTTATAGCGATACTTTCTTTAAACAATTGCTATCTTTTTATGTACTGAAATTTGCATAATCCTTATGATGTGTTTTTCTTTAATCATCTTTATGTAATTAATACATGTAGAGGATAAGAAGAGAGATGATTAGCTTCTGCATTTCTGAGATGTGAATATCTAATTAGGTATCCAGATCCTAAGAAAAAATATCTTCAGAGAATAGTATCAAGCAAATATTAAGAGAAAGCAGTGAGCCCATTTTTTTTTGGGTATTTCATACCATTAATCGTAGCATTCGGCAGTTCTGCAGTTATGTATACTTTGCACTTCTATTGTGCAAATGTTATGTTACAATATATATGCTGTTCTGAAGGTCCATGACGAAATTCTTGCTGCAATCAGGGAAAAAGAGGAGGGACCTCTCCATTTGAAATGCTCTAGGCTACATAAAAAACTGACCTATTCATATGAAACCTTAAGATAGTACATATTATTATTAGACAATATGTTGGTCTTTTCTTGCTAAACCTGAATTGTTCTATTGGTGCATAGTGGAATTAGTAAGATTGGTGTGACTAAGTAGATATATTTGAAGTGTATACATTTTTATTAAGTCAATAGACAATGTTTCAGCCTGCAGTGATCGACATATTCAGGTGTCAGTAAAGAGGCACAACATTTATTTGCTTACTGGATTACTTCTAGACAAGGTTTGCTTCTTGCTTTTCTATGACTGACATGTTGTAGCTCCGCTAAATGAAGTATTATTACAATTTTAATGGAGCATTATGATATTAGTTATGCTGATTTAAAATGCGGTAATCTATTGCTTTAGACATGGTAACATACATGATGAATTGACCTCTTGTTATAGTTTTAGTTTCATCATGATTTTTTAGAAATATATATAATATATGAATATTCACAATGCAACATCCTCTGCCTTTTCTTCTTTGGATATATCACACGGAGATAAAAGGGAATTATTAATATGTTAGATTGTGCTATCAGTGTTGATGTGAAACAAAGTTATCACTGGTATTTTTTATCATGGATTTCTATTTTCTAATATCCGTTTCCTATCTAACCAAAGGAGGGAACAACAATCGGTGCATGATCTCTCTACCTGATTTAGACAGATAACACTATCAAACACAACTTGCATGGGATTTCTATTTTTCTGTTGGTCATGTGGGTTAGTAATGAGGCATGAGCAAAATTTTTCAAATTTGATTACTATAAATTACTGTTACTCTAACATCCCTACTCATGTTAGATGATGTTCTGAAAAAGATTCTAGCATGTATAGCTTTATGTGCAATGCCTCTTGAGGATGCTGCAGGTTGTGTATTTTCTGAATTATTTGTAGTAAATAACCATACACACATGGATTCTTCTTTATGTTTCTTCATGCACCATTGAAACTTTGATGTACTAGCAGCCAGGGAGTTGCCATTTTCCTTTCTACATTCTGATGGAGGTAAACTCAACATATATGTCTATGTGAAACCATGTCATTAATATATTTTGGCGTATTTCTGATATAATACTTAAAACAAGTGCTTATCAGTTTTATTTCGAGGGATTAACTGAATCTGGAAAATGGAGGACCTAGATTTTCTAAAGGGTCATCTGATAATATATGTTATTGAACAAGTGTGATCTTTCTTTATTTTTGCTAATTGATTGATACCTTGCCATTTTTTAAGTTCTATTTCCTGTACCAATTTCCTATAATCAATGTAGTTTTTTTTTTATTTACATAAGTCTCTCAAAGGTATTGTCAAGCTTCTGACCATGTTAACATTGAGGCTGCCTTGTAACAGTGTACCTCTCCTCAAATATCAGAAACATGGTTGCAAGAGTCCATTCTAAAATGCATGATGGCCACAAAGTTTGTTTGCTCCAAGGCCACAAACAGTGTCTCAAAATGTAGTATAAATTTGTATGATCTTCCCTCTAAATTCTAAACACGGTTTTTGACAACTGACAAGTATGGATAAAAAATTCGATGCCTAAAAATATGCAGGAGCCTCAAGTGATATCTTTAGAAGGGATGAGTTTATTGTAATAAACATGAATATATGATGTAGGCTTAGACATTATTTCTAGATTGACATTTTAATTTCTATATAATACATGATTCATGAGTTTGAAATGTATATGTAGTTATTTATATTTTGTTTTTGTCTCATGTGACATCGATTTCATGCATAGGCATATTTTTTGATTCTCCTTATGCTATTACAAAGTACCGTGCATTCGGATTACATATTTGTGGAGACGTGCATTGCACGTGCATGATTACTAGTAGGAGAATCTAATCCTAAACTAATCTTTTGCTCTATTACTTTTCAGGCCATATATACATATCTTGGGGAGTAATAGATGTTCCATGTGTCAATGCATCAACTAAAATACCTGATGAACATGTATAAGATTCTTAGGAAATTACATATGCAACAGCCAACTTTAATTTTTTTTCTCAGCATCTCAGGGCATTATTTTCATCAAGATTTTTGGCCTACGCTAATGACTGATGACAAGGATTTCGATTCCAACAAGGACCTTTGTTGATTGCGGAAATGCTGAAGATACATTGAAACTATTTGCTTGAATAAACATAGATGGCTGTGTGGGGTAACTTTCATCTTTACATAATTCAGCTTTCCTAGAATTATTCGATGTCTTAGTACATGACCTTGCAATACCTTATGGTTACTGAAAAATATATGTCGTACTTTTGCAACTTAGCCAAAGATTTATGTAGCAACTTGGTATCCATGAGCAACGTGGTGAAACTTAAAATAATCTTGATGTTCTTTATATTCTAATCTTGATGTTATTTTATGCAGTTAATCTCAACGAATGCCCCTGTATTTTTTTAGTCTTTTTTTTTGGGGGGGGGGGGTGGGGGGGGGGAGGGTGCAATCTGGTTTGGAATGTGGGAAAGGAAAAGAAACTGCAATGTTGAAGTGGTAGAGCAAGCAAAAGGTATGTTTATAGTTTGCTTTCTAACCTGATTCTATAAATACTCATGAATTTAGGAAACCTATGTGCTGCAGTTAAACTTTAGAAATTAAATTCACAAACATTAGTCAGAGTCTCATCCACTGATAAATATCCATGCTTATTGGAATGAGGAGCAAAGTTCCACTTGATTATTGTATTCAACAAATGCTTGATAAAA
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| CDS seq | ATGTCGACAGGGAACATGCTTGCAGATCTCTTTTCCATCAATGGCTACCACGAGGGTCTTCCCATGGTGCTTGCCCACATTGCCACCTACGCCGCGCTTGCTCTTCCCCCAACTGTCGACGCCCGGCACCATAGCCGCCGAGGCCAAGAAGATCTGGACCATCTGGTCATCTTTGGCGCCATGAATCCGGCCACTTCCGCCAACGGGGCTGCTGCCATCATCGACCCGCCGTCTAGCACGGTTCAATGGGCATCATCACACGCCTATGCTTCATGTCCTTCTTTACTAGCAGGTCATCAGGTGGAGAAGCCATCCATATGCTAA |
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| Protein seq | MSTGNMLADLFSINGYHEGLPMVLAHIATYAALALPPTVDARHHSRRGQEDLDHLVIFGAMNPATSANGAAAIIDPPSSTVQWASSHAYASCPSLLAGHQVEKPSIC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g21541 | LOC_Os08g21541.1 | Chr08 | 12830882 | 12836049 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGACAGGGAACATGCTTGCAGATCTCTTTTCCATCAATGGCTACCACGAGGGTCTTCCCATGGTGCTTGCCCACATTGCCACCTACGCCGCGCTTGCTCTTCCCCCAACTGTCGACGCCCGGCACCATAGCCGCCGAGGCCAAGAAGATCTGGACCATCTGGTCATCTTTGGCGCCATGAATCCGGCCACTTCCGCCAACGGGGCTGCTGCCATCATCGACCCGCCGTCTAGCACGGTTCAATGGGCATCATCACACGCCTATGCTTCATGTCCTTCTTTACTAGCAGGTCATCAGGTGGAGAAGCCATCCATATGCTAA
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| Protein seq | MSTGNMLADLFSINGYHEGLPMVLAHIATYAALALPPTVDARHHSRRGQEDLDHLVIFGAMNPATSANGAAAIIDPPSSTVQWASSHAYASCPSLLAGHQVEKPSIC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.444819 | 1.127341 | 0.412568 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0749000 | SBH | 1.251709 | 1.662643 | 1.412482 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g51390 | RBH | 0.826166 | 1.091442 | 0.354879 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0307000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0010950 | RBH | 0.000000 | 0.0 | 2.960331 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010700 | RBH | 0.0 | 0.0 | 4.941899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010560 | RBH | 0.000000 | 0.145104 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010760 | RBH | 0.000000 | 15.306273 | 4.272712 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0198000 | RBH | 2.8046855 | 12.6489275 | 9.876168 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010800 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0203200 | RBH | 1.4892355 | 9.240101 | 7.505206 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0010410 | RBH | 0.0 | 0.448042 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011150 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
