Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g20580 | OGI:08034690 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:12357703-12358959 | ||||||||
| Gene Symbol | CTZFP8, OsCTZFP8 | ||||||||||
| DNA seq | ATGGCGATGGCATTTTTGGGACAAAGTCGTTTGTACGATGGCATTTCTTGGAACTCACACTTGTCGATGGCATTTCTGGTATTTGGATGCTTGTCAATGGCATTTCATGAAATATCTCATTAGAAGATAGATATGTTTTCATTTGAGCCTACTTAATTGAGACTTGAAACATGAATTTAAGTATCTAAAACATTTCAAATGAAAAAAAAATCACCTATAAAATTATAAATCTCGTCAAGAGCTATAATTTCAAATAAAATTTGTCCAAATCTGTGTCCATATGAAAAGAAATAAGTTTAACTATGAGATTTGAGATGAATTTTGAGACTTGAACGACTTCATTTCGAGTTTGCATGAATTAGTTATGAATTTTACGATATTTAATCCAATTAAAGCCTAATTAAAAGGATTAAATAGATTTATGATATCATTTACAATTATTTTTACACTGATAAAATAGGATTAATAACGTCGGCCATCCGTCGCGAACCCGGTTCAGAAGGTCCCTCAACTTGTTATCGAGTTACAAAATCGTCCCCCAACCAGAAAACCAGATACAGAGTATCCTCCAACTTAAAAAACATTCATTTTAGGTCCTTTGGTGGTTTTGAACCCGGTTTCATCATACGTGGCGGCTGAGTCAGCGTGGAACCCACGTAGGTCCCACCTGTCAGCGTGGCCACGTCAGCACCCTCTCTCTCTCTTCCCCCTCCTCTCCCTTCCTCATCTCTCTCTCTCTCACTCTTCTCGGCAAGCCGGCCGGTGGCTGGGGCGAAGGCCGCCAGGGTGAGGCGGCGGCGGCAGGTCGCGAATGGCGAGACGGAAGCGCTCCACGCCGCGGTGCTCAAGGAGGAGGAGCAGCAGCACGAGGTGGAGGAGGCGGCGGTCGTGACGAGCAGCAGCGCCACAAGCGGGGAGGAGGGCGGGCACCTACCGCAGGGGTGGGCGAAGCGGAAGAGGTCGCGCCGCCAGCGATCGGAGGAGGAGAACCTCGCGCTCTGCCTTCTCATGCTCGCCCTCGGCGGCCACCACCGCGTCCAGGCGCCGCCTCCTCTCTCGGCGCCGGTAGGTGCGGAGTTCAAGTGCTCCGTCTGCGGCAGGTCCTTCAGCTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGGTTCAAGCTGCCTACTCCGCCCGCATCTCCCGTCTTGGCTCCTGCCTCCTCCGAGGTCCAGAGCCCCCTCGCCTTCTCACCGCGTAATTCAGCAGCTGCACGGATCTGA
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| CDS seq | ATGGCGATGGCATTTTTGGGACAAAGTCGTTTGTACGATGGCATTTCTTGGAACTCACACTTGTCGATGGCATTTCTGGTCCCACCTGTCAGCGTGGCCACGTCAGCACCCTCTCTCTCTCTTCCCCCTCCTCTCCCTTCCTCATCTCTCTCTCTCTCACTCTTCTCGGCAAGCCGGCCGGTGGCTGGGGCGAAGGCCGCCAGGGTGAGGCGGCGGCGGCAGGTCGCGAATGGCGAGACGGAAGCGCTCCACGCCGCGGTGCTCAAGGAGGAGGAGCAGCAGCACGAGGTGGAGGAGGCGGCGGTCGTGACGAGCAGCAGCGCCACAAGCGGGGAGGAGGGCGGGCACCTACCGCAGGGGTGGGCGAAGCGGAAGAGGTCGCGCCGCCAGCGATCGGAGGAGGAGAACCTCGCGCTCTGCCTTCTCATGCTCGCCCTCGGCGGCCACCACCGCGTCCAGGCGCCGCCTCCTCTCTCGGCGCCGGTAGGTGCGGAGTTCAAGTGCTCCGTCTGCGGCAGGTCCTTCAGCTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGGTTCAAGCTGCCTACTCCGCCCGCATCTCCCGTCTTGGCTCCTGCCTCCTCCGAGGTCCAGAGCCCCCTCGCCTTCTCACCGCGTAATTCAGCAGCTGCACGGATCTGA
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| Protein seq | MAMAFLGQSRLYDGISWNSHLSMAFLVPPVSVATSAPSLSLPPPLPSSSLSLSLFSASRPVAGAKAARVRRRRQVANGETEALHAAVLKEEEQQHEVEEAAVVTSSSATSGEEGGHLPQGWAKRKRSRRQRSEEENLALCLLMLALGGHHRVQAPPPLSAPVGAEFKCSVCGRSFSSYQALGGHKTSHRFKLPTPPASPVLAPASSEVQSPLAFSPRNSAAARI |
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| Function | Zinc finger protein 1 [UniProtKB/Swiss-Prot:Q42430] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g20580 | LOC_Os08g20580.1 | Chr08 | 12357703 | 12358959 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGATGGCATTTTTGGGACAAAGTCGTTTGTACGATGGCATTTCTTGGAACTCACACTTGTCGATGGCATTTCTGGTCCCACCTGTCAGCGTGGCCACGTCAGCACCCTCTCTCTCTCTTCCCCCTCCTCTCCCTTCCTCATCTCTCTCTCTCTCACTCTTCTCGGCAAGCCGGCCGGTGGCTGGGGCGAAGGCCGCCAGGGTGAGGCGGCGGCGGCAGGTCGCGAATGGCGAGACGGAAGCGCTCCACGCCGCGGTGCTCAAGGAGGAGGAGCAGCAGCACGAGGTGGAGGAGGCGGCGGTCGTGACGAGCAGCAGCGCCACAAGCGGGGAGGAGGGCGGGCACCTACCGCAGGGGTGGGCGAAGCGGAAGAGGTCGCGCCGCCAGCGATCGGAGGAGGAGAACCTCGCGCTCTGCCTTCTCATGCTCGCCCTCGGCGGCCACCACCGCGTCCAGGCGCCGCCTCCTCTCTCGGCGCCGGTAGGTGCGGAGTTCAAGTGCTCCGTCTGCGGCAGGTCCTTCAGCTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGGTTCAAGCTGCCTACTCCGCCCGCATCTCCCGTCTTGGCTCCTGCCTCCTCCGAGGTCCAGAGCCCCCTCGCCTTCTCACCGCGTAATTCAGCAGCTGCACGGATCTGA
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| Protein seq | MAMAFLGQSRLYDGISWNSHLSMAFLVPPVSVATSAPSLSLPPPLPSSSLSLSLFSASRPVAGAKAARVRRRRQVANGETEALHAAVLKEEEQQHEVEEAAVVTSSSATSGEEGGHLPQGWAKRKRSRRQRSEEENLALCLLMLALGGHHRVQAPPPLSAPVGAEFKCSVCGRSFSSYQALGGHKTSHRFKLPTPPASPVLAPASSEVQSPLAFSPRNSAAARI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.292572 | 0.0 | 0.227565 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0300366 | RBH | 0.0 | 0.0 | 1.008309 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0300366 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010640 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010610 | RBH | 0.0 | 3.201615 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0188500 | RBH | 0.1559495 | 1.0685605 | 0.0992715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010640 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0192300 | RBH | 0.2514665 | 0.8448855 | 0.204634 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0010990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010460 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010310 | RBH | 0.0 | 0.0 | 0.0 |
