Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g20440 | OGI:08034510 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:12272625-12277708 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCACCCAAACCCTCTCGTGTCGCGCGGCTCGCCTGCCCCCGCTCCGCCGACCACGGGCGCACCATGGCGCTGCCGCCACCGACGCCGGAGGTCATGGACGACCTCACCGCCTCGCTCGCGCCGGAGCTCCTCTCCGAGATCCTCCTCCGCCTCCCGCCGGACGAGCCCGAGCAACTCTTCCGCGCTGCCCTAGTCTGCAAGGAATGGCTCCGCGCCATCTGCGACCCCGGCTTCCTCCGCCGCTACCGCGCCTTCCACCGATCCCCTCCCCTGCTCGGCCTCCTTTACGCCGCCAAGTTCTACAGGGAGCCCCCGCCCCCCACCTCGCCCGCACCACCGCAGTGCCCCTCTCGCCCGATCCCACCTTTCGCCGGGCCCTCGATTGCCGCCATGGCCGTGCCCTCCTCCACGCTTCGGACGATGATTGGTATCTCATTGTCTGGGACCCCGTCACCGGCGAACAGCACCGCGTGCCAGAGCCCGGCATCCCGTGGCTGATCTACTCCAGCGCTGTGTTCTGTGCCGTGAGCGGCTGTGACCACCTCGACTGCCACGGCGGTCCCTTCCGAGTGGTCTTTGTGGCCACCGATGACGGGGCGGATCCAACACCTACACCCACAAAACTCATGGATACCCCGGAGCACCCCCTTCGATTTTTTCACTATGAATGAACTAAAAGTCCCTAAATGGCTGGAGGTTGAAAAAACTGTGTAATTGAGCCTCCCTAATTTTTTGTTTCTGATCCACCCGTGATGAGTACAAAGATCTCGTTAAGGCGAGCATGTACTCATCGGAGACCGGGGCGTGGAGCACCCCGGTAGTTCTTGATGATGGTCTTGATTCCTGGGAACAGCGATGGCGAGATGCACAGAGTAGAGGTGAATTCTACCGCGTACCTTATGTCATGCCTAGGCGAGTTGCCCTTGTCGGAGATGAAATCTACTTCACACTTCGGGAGGATAATGCCATCATCAAGTACAACTGGGGCATGCACTGCTTATCTGAAATTGACTCGCCGTCGCCAGACGTGTATGGCATTGCCCTCATGGAGATGGAGAACGGTTCACTGGGTTTTGCCTGCATTGAGGATTCCAGCCTTTATGTGTGGTCACGGAAGGTGAATTCAGAAGGGGCAGCAGAATGGGTACAATGCAGGGTGATCAAGCTGGACAAAATGATACCTGTTGCCAATCTCAGTGATGAAGCATTTGTGGTTGGCTCTGGGGAGGGTATGGGTGCCATATTCGTGAGCACAGGTGTTGGCTTGTTCACGATCGAGCTCAAGTCAAGGAGGGTGAAGAAGGTTGCAGAGCCTGAGGTCTACTTTAGCATCTTACCCTACATGAGCTTCTACACTCCTGGTATTGTACTAAGACTTTGCTTATCTGCTGTATGCATTTTCTTTACAGCTTCTATATATCTTATTAGTCATAATATAACTGCAACATTTGTTATATGGATTGACAAAGGCTGTTTTGTGTATGCTAGAGAATACTGAATATATGGCATTGGAAATAAGAACCTAAATTTTATTATTGAGATTCGACTTGTGAAATAACCATGACCATGCATCTGGTATCTGTTAGCTGCTACAAAGGTTTCTGTTAATTATCTGGCATAGCTGAAGCTAACTTCTCAGGCTCAGTTGATTCATGGAATAGTTGATGTAATTGATAAAACATGAAGTGGCTACTACGCTAAAATGGATATTGCTAAATATTTAAAGAACCTTCTTGATATAATATTATCCTATCGTATTGTTTCGGGTTTTCTTTACAAAGTATTATGTTGCTCTCTAGCATAGCTGAAGCTCACAACTCAAACCCAATTTTACAACCTTTGAAACTAGTTAGTTCTAAGTGCATAGCTCGTTAAATTGTATACTTTGAGCTGGAAACAGTTGGTTATGAGTTGTTCACTTGCCTGTTTGGTGTCTTTTCAGATCGTGGCACATTGTTATCGCTAGCAAGGACTCACTGATCTTTGATGTCATGCTCAAGAGTAACTTGTTGCAAAATGGACAAATCCATTGTCTTGACTCTTGAATCTGCTGCCACTGACTTCTTCCAGAACTACTACTACTACTAAGCTGTTTATTTTTTGTTGGGCAGTACAAGTACGAACAATGCCAAGTCTGATGTTCAAATGTGGTTGTTGTGTCAAATTCATCCTACCGACCATGAACTGTAAGCAGTCTAACATGTCTGGCACATTTCAGTTACTGTTTGTTTTATGTTGAGCTCAGGTACATGAAACTAAAATTATGTTGACTTATGTTGCTTCCATTCAGAGATCAGCAAGTCGTGCTAAGCTGAATAGCTGGCTCCCTATTCTTTATTGTTCGTTTTGAGAGCATGGTTTGCGCTTTGGGTAATATGGTTTCTGTGATTATATTGAGCATCAAGACGCCCATGATGGCTCCGGTGATGTTTGCTTTGATTCCAGCCTTACAGGAATGGGCCAACTATCGGAATAAGCATCAACACGCTGATGAGGCCATGAAGGCTCAGGTATCAGAATTTCTTTCTCTGAATTCTATTTTATCAATTTCTCCTAACTTTATTAGTGTTCTCTGAACTTAGTGGTCTTGCCCTTGTATATGCTATTTACCTCTGACGTGGTTTCTTCGTTTTGGCTGGCTGAGTGTTTCGTTCGGCCCGTGCTGCTACTGGGCTGCTTCTTTCTGGACAGAGTTGTGTATGCTTTTGCTTAATCAGTTAACATAGTTGGATAATAACGTAAGTGATGTCTATGGAAATTTCTGAACAGCATGGATGTATTACAAGTTATCAGTTTTTGAATCCAACTCTGAGTATGGGACGGCTTCAGTTTTTCCTGCTGTGTGGCCTTCTTTTAGGATGGATTTATATATTCCTCCCAAATTCTGAATTGGATCAATAAATGGCATGTATAGTCCAGAGAGATATAACCCTTCTTTTTTTATTTGATGGAAGATATAACCTTTCTTCATTGCACAAGTTTCGACAAACAAAATCTTGATTCTTAAACTCCGTAGTTTCAACCTGTCAGAAGGTGACTACCTTGTCAGTGCCTTTTATGTACATCAAGTTTTTAAGGGATTTTAACATCCCAGAAATTTAATCCTTGATTAATAGTTACAAGAAAATAGTGTGGATATTATGTTTTTTCGCCATTGGAGACATTAGCTGTAATTTTGAATCTAAACTTAAACAAATAGTTAACCTGAAATAAAGATCTAACTATAAATGTAGATATGAAGCTACAATAAAAGTTTATGAAAGTATGAAGCTTTAAAATAAATAGCTAACAATTATATAACCATATTTTTGCAAACCAATAGGGCTATTTGAAAACAGATCAGCACATAGAATTTTTGTGGGATATAATAGAGCATGGTAGTGATCAGACAAAAGCCTTAGTACTCCGTAGTCAGTACTCAGTACTAGTCTACAACCGAAACAGGTATCATAGTCCACAAGTATTTTAGAAATGGAAACAAGCAGAAAAAAATTCGACAGAACAAGTAGGTTTGAAGGACTGCATGACTTTCATTTATTCATGAAATGGAAACGAAAACAGCAAGCCTTGAGCATTTTTTGGTGCAAGAGATCGATGATGCTCCAATAATCCATATATTCCGTCCTTATCAAAAACATTTTCCTGCCAATAGGACATGATGCAAAAGGTTTGCTAAGATGGCAGTTAAGATGGGGTAGGAGTTACTACTTGGTGATTTTTTAAATTGTAGTAGGCTCTTGATGATTCTTCCAATTTTAAGGAATGAAATTAAAGGGTGAAATTTTAGAGTAACTTTGTGGTGCGGCATTTATACCTGCACTTTAATTCAAATATTGAGATTAGAAGTCATGGAAAGGGATACGAGATATTGAATTAAGACGGATACAATGAGGGAATTCCATGGAAAATTTAAATGAACTTTCAACATAAAATGTGAACTGTACTTTTTATTATGGTGTTTGGTCTGGAACTTGATTTTGGGATTTGGGTTTATTTTTGTATTTTGTAACTTGGATTAGAGGGAGGTAATATTTAAATTAATTTAGAAGGGATTTGAATATTTGGGTTTTTGAAACATGGATTGGACTCGAGTTTATGGAGTTTGCTTTTTTGGAGGGATGAACTGCATAACATGAGATTATTTGACACAGCTTATGAGATGACAGTGGAAAAGCAAAAAAAAAGTAATTAATCTTTTACTAAACAAGAGTTTTAACGCCTCGTAAAATCAGGGGCGTTACTAGCCAGCAATATGTCATGACGTCCATTACTCCCTACCAATATGATCAATATAGTCGTTCGACTAAAATTAGAGTTAGCACAATTCTAGCCTATCCTTTTATCAGTACAAACGTCAATTTTGGAAGTCGAATTGTTAAAATTGGCTAGATTCATTGGCAACTATTAATTTGTATATACTTATGACTAACAAAATAAATTTCTTACAAAATATAGACTTATCACTTCCTTTTTCATCTCCATAGAGGTCTATATAAAGGTTCTTGTACCATCCCTTGACAAAATACAGAGAACACATTTTTGTTTAGGTGATAGTGAAGGGTAAGCAGCCATGAGAAGGGGAAAAGTTAAGATCAAGCCCATTGCAAATAGAAAGGCTCGTGATGTATGCTTCTCCAAGCGCCGCCAGGTTGTAATCAAGAAGGCTAACGAACTCAGCATATTATGTGGTGTCAATGTTGCTGTTGCTGTGCTCTCACCTGCTGGTAAGCCCTTTTTCTTTGGCTGCCCTACTGTTCAAGCTGTCACTCGTCGCTTACTTGGTGTGGGTCCTAGTAACCCTACCATGGGTGATGGGGGCAATGGTGATGAGACTGACATAGTGCATGAGCTCAATCTGAAGTACCAGAAGTTGCAACAAGAGAATGAAGTGGAGAAGAAGAAAAACCAGCGTGGTCAGGATGTGAGGCTAGCTAGTGATGTAAATGCATTGGGGCTGCATGAGTTGGAGGCATTCGACAGTAACCTCAATGTAATAGATGACATTGTCGATTCAAATGATGTGGTTAAGAATGCCAAGCAAACAGCTGAGCCCCAGACTCAGATGAGCGTGGCATCAACCTTGC
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| CDS seq | ATGTACTCATCGGAGACCGGGGCGTGGAGCACCCCGGTAGTTCTTGATGATGGTCTTGATTCCTGGGAACAGCGATGGCGAGATGCACAGAGTAGAGGTGAATTCTACCGCGTACCTTATGTCATGCCTAGGCGAGTTGCCCTTGTCGGAGATGAAATCTACTTCACACTTCGGGAGGATAATGCCATCATCAAGTACAACTGGGGCATGCACTGCTTATCTGAAATTGACTCGCCGTCGCCAGACGTGTATGGCATTGCCCTCATGGAGATGGAGAACGGTTCACTGGGTTTTGCCTGCATTGAGGATTCCAGCCTTTATGTGTGGTCACGGAAGGTGAATTCAGAAGGGGCAGCAGAATGGGTACAATGCAGGGTGATCAAGCTGGACAAAATGATACCTGTTGCCAATCTCAGTGATGAAGCATTTGTGGTTGGCTCTGGGGAGGGTATGGGTGCCATATTCGTGAGCACAGGTGTTGGCTTGTTCACGATCGAGCTCAAGTCAAGGAGGGTGAAGAAGGTTGCAGAGCCTGAGGTCTACTTTAGCATCTTACCCTACATGAGCTTCTACACTCCTGATCGTGGCACATTGTTATCGCTAGCAAGGACTCACTGA
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| Protein seq | MYSSETGAWSTPVVLDDGLDSWEQRWRDAQSRGEFYRVPYVMPRRVALVGDEIYFTLREDNAIIKYNWGMHCLSEIDSPSPDVYGIALMEMENGSLGFACIEDSSLYVWSRKVNSEGAAEWVQCRVIKLDKMIPVANLSDEAFVVGSGEGMGAIFVSTGVGLFTIELKSRRVKKVAEPEVYFSILPYMSFYTPDRGTLLSLARTH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g20440 | LOC_Os08g20440.1 | Chr08 | 12272625 | 12277708 | + | MSU_osa1r7 | ||
| CDS seq | ATGTACTCATCGGAGACCGGGGCGTGGAGCACCCCGGTAGTTCTTGATGATGGTCTTGATTCCTGGGAACAGCGATGGCGAGATGCACAGAGTAGAGGTGAATTCTACCGCGTACCTTATGTCATGCCTAGGCGAGTTGCCCTTGTCGGAGATGAAATCTACTTCACACTTCGGGAGGATAATGCCATCATCAAGTACAACTGGGGCATGCACTGCTTATCTGAAATTGACTCGCCGTCGCCAGACGTGTATGGCATTGCCCTCATGGAGATGGAGAACGGTTCACTGGGTTTTGCCTGCATTGAGGATTCCAGCCTTTATGTGTGGTCACGGAAGGTGAATTCAGAAGGGGCAGCAGAATGGGTACAATGCAGGGTGATCAAGCTGGACAAAATGATACCTGTTGCCAATCTCAGTGATGAAGCATTTGTGGTTGGCTCTGGGGAGGGTATGGGTGCCATATTCGTGAGCACAGGTGTTGGCTTGTTCACGATCGAGCTCAAGTCAAGGAGGGTGAAGAAGGTTGCAGAGCCTGAGGTCTACTTTAGCATCTTACCCTACATGAGCTTCTACACTCCTGATCGTGGCACATTGTTATCGCTAGCAAGGACTCACTGA
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| Protein seq | MYSSETGAWSTPVVLDDGLDSWEQRWRDAQSRGEFYRVPYVMPRRVALVGDEIYFTLREDNAIIKYNWGMHCLSEIDSPSPDVYGIALMEMENGSLGFACIEDSSLYVWSRKVNSEGAAEWVQCRVIKLDKMIPVANLSDEAFVVGSGEGMGAIFVSTGVGLFTIELKSRRVKKVAEPEVYFSILPYMSFYTPDRGTLLSLARTH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g20440 | LOC_Os08g20440.2 | Chr08 | 12272625 | 12275366 | + | MSU_osa1r7 | ||
| CDS seq | ATGTACTCATCGGAGACCGGGGCGTGGAGCACCCCGGTAGTTCTTGATGATGGTCTTGATTCCTGGGAACAGCGATGGCGAGATGCACAGAGTAGAGGTGAATTCTACCGCGTACCTTATGTCATGCCTAGGCGAGTTGCCCTTGTCGGAGATGAAATCTACTTCACACTTCGGGAGGATAATGCCATCATCAAGTACAACTGGGGCATGCACTGCTTATCTGAAATTGACTCGCCGTCGCCAGACGTGTATGGCATTGCCCTCATGGAGATGGAGAACGGTTCACTGGGTTTTGCCTGCATTGAGGATTCCAGCCTTTATGTGTGGTCACGGAAGGTGAATTCAGAAGGGGCAGCAGAATGGGTACAATGCAGGGTGATCAAGCTGGACAAAATGATACCTGTTGCCAATCTCAGTGATGAAGCATTTGTGGTTGGCTCTGGGGAGGGTATGGGTGCCATATTCGTGAGCACAGGTGTTGGCTTGTTCACGATCGAGCTCAAGTCAAGGAGGGTGAAGAAGGTTGCAGAGCCTGAGGTCTACTTTAGCATCTTACCCTACATGAGCTTCTACACTCCTGATCGTGGCACATTGTTATCGCTAGCAAGGACTCACTGA
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| Protein seq | MYSSETGAWSTPVVLDDGLDSWEQRWRDAQSRGEFYRVPYVMPRRVALVGDEIYFTLREDNAIIKYNWGMHCLSEIDSPSPDVYGIALMEMENGSLGFACIEDSSLYVWSRKVNSEGAAEWVQCRVIKLDKMIPVANLSDEAFVVGSGEGMGAIFVSTGVGLFTIELKSRRVKKVAEPEVYFSILPYMSFYTPDRGTLLSLARTH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0299600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0299600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010690 | RBH | 0.0 | 0.0 | 0.381133 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0010700 | RBH | 0.218727 | 0.000000 | 0.429709 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010870 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010540 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0187400 | RBH | 0.005312 | 0 | 0.107203 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010570 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0190900 | RBH | 0 | 0 | 0.067894 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0010180 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0010920 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010360 | RBH | 0.0 | 0.0 | 0.0 |
