Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
LOC_Os08g20330 | OGI:08034360 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:12209511-12212187 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGTACACCTCTGATCAGAGTAAATCTATTCGAATAGCCGAGCCCTCGGATATGGGCAAGCCTAGCAATGTACCCAGGTCAGTGTTTCAATTCTTAAAATTTGCTCAACAACTAAAATATGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCCAATTCATCGTAGGCCTTGGGTTAAGGCAGGTTCGTGAGGGTTCACGGCCTTGTTTAATAACACTGTGTAGCTCTAGGATCGTCTTTATAAAATAGCTTTGGGCAACTAAGTGACTTTTAAATGCTGTTTACTGCAAAACTGAACCCCTATATTATTATCTCCTTGTACTCCCTTGCATTAATCATGCATTCTCCGGTGTGGCTTGCTGAGTACTGTGGTTGTACTCATTCTTGCTCAATCTTTTCCCCCTTCAGTAAGAGAAGCTTTGGAGGAGAGGTCTTAGGTGGAGTCCTGGCTTATACCCCAGTTGAGCGCCTGTGAAGATGGAGCCGTAGGCCCGCTAGTCCGCTGCTGTTTATTTTTGATTGTCAGGCCTTAAGTGCCTTTGTAATAATGTAAATATTATCGATATAATAAAGATGTGTCTTTTATATCATGTTTGTATGGTGTACCCCGGCTTTTCCTGGGACGGGGATTAATACACTAGCGTTCGGGAAAAGGCAATTTTCCCGGTCGCGACAAGCTGGTATCAGAGCCATCTCGACTGTAGGAAAAGCCAAGTGGATAAAACCTAAGGACATATTTTATAAATAAAAATTATTTGCGAAAGTTCCTCTTTTCTCCTTCCCCCAATGCTTTTTGCAAAAGGTTTACTCCGTTCTTCCTTCTTCGGATTTTCAACTAGTACTAGATGGTCAGGTCAGTGAAGAAGAGGACATCGTCAGTTGTTTGCCGAAGTTCCAGAAGACTGCAGGATCTGCGAGTGAAGTGGAGGAAGCAGTGAAGCCGGCTGTGAAGCAGGAGTGAAGATCTTGGAGAACCCGTCGCAGAACCTAAGCCACCCTCTAGTGTTTCGTTTGTCGTGTGTTTCCTTGCTTGTGTGTGTAGCGCGTGGTTTGCATCGGTGGGTGGTGATGTAACCATGCTAGGTTGTTTGCTTAATCAACTTGCAGAATAAGCCTAACATACATCATAACAGCAAAAGACTTAGATCTGTTAAGGTCCTATCCTTAGTTTCTAATCTGTCTCTCCCCTTCGTTTTCCCTCTCTCCCTCTCCAAACCTTTGCAACAGATGGCTGACAATGAGAAAGGCAATAAGGTCAGGAGTCAGGACATTGGTACCTCAAGCTCCCGAGTGAATGAAGCACAAGACACCAGTTGTGCGGCAGTGGTCCAACACCTGATTAACCAGAACAAATTGCTTATAGAGATACTACAGCAGCATCGGATGCCAATTTTGAACCCGAGTCAGATGCAACCTCAGGTGCAGTTGGAGGCAGTCCAAGCACTCACACCACAAGTCAGCGCACCGCCAACATCCCAGAAGGCCCCTCATGCCATGCCACATGTTGACCCAAAAGAAGCAAGTATCATCTGTTTTATGTGTGATGAGCAAGGGCACTACGCAAGGAACTGTCCTCAGCAGAAAAGAAAAGCACCAATGCGAACCGAAGGTGAAGTTCGTAAGATGATCATTACCAGCACAGAATGGCCTCCACCAGGAATGACAAGACGTCAGAGAAGAAACACCTTCCGAGGTGCACCACAGTTGACAGAGCATCTTTTAGCTAATGGAGGTAGAGTGTCTGATAGTGAAGATTCAGATCAAGTCTCCTCAGAAGATGAAGATGAGAAATCTCCCCAAGGTTTCAACCAGGATAAAATGGAACGTAAGGCATGCTCTCGTTGTGGAGAAATCGGACATGTTGCCAGCTCGTGTGCCTCTACATGCGTTCATTGTGAGGAAGACCATCCACCCGACAGGTGTCCAACGAGCAGGATCACTTGTTTCTTTTGTGAAGGAACTGATCATGTACCAAAAGATTGTCAATTCAGTTTTCTGCTGACGAAGAAGATGGCTAACCAACCCGCCGGTTTCAACGGAGAGAAGCATCAAGGCAACACCAATCCTCGCCAAGATTACAGTTTCAGCCTAACTCCAGTGCCAGGACAGAGGAATCAAAATGAGAAAAGAAAATGCCGAGTCCGGGAAGATATCTGTTGCTTCAATTGTCAAGGAATGGGTCATTTCGCCGACAAGTGCCCAAAACCGAGAAACATAGCTGCCGGCACGTCAGTCCACGCAACTCCCTGCAATCAGAAGCTTGCTCCTCAACGAATGGTCATCCATGCATCCCGAAGCAGTCCTATAGCCCGCGTTGCAACAGCTCCAATTCCAATGAGTGCACTACCACAAGGTGTCAATGCTCAATTTCAGCCCCAGCCACCAGCTGACAAGACAGATGCCAGTATCTGCGTTGTACCTTTAGAAGCTCCAATACAGCAGCTGAGAAATCAAGTACAAGATGAAGAACCCGAGTGTAAGAAAGTTATTGTTTGTCACAACTGCAGTGGAGAAGGGCATTACTCCAAAAACTGTCCCCGACCTCCACATTTTCGCCAATTTACACGAAGCAGACATTCCAATCGTATTGTGGTCACTGGAGCAAACGCCGTACCCGTAAGGCCTCGTGTTAATCAGAACCCATAG
More
|
||||||||||
CDS seq | ATGTACACCTCTGATCAGAGTAAATCTATTCGAATAGCCGAGCCCTCGGATATGGGCAAGCCTAGCAATGTACCCAGGTCAGTGTTTCAATTCTTAAAATTTGCTCAACAACTAAAATATGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCCAATTCATCGTAGGCCTTGGGTTAAGGCAGTTCCTCTTTTCTCCTTCCCCCAATGCTTTTTGCAAAAGGTTTACTCCGTTCTTCCTTCTTCGGATTTTCAACTAGTACTAGATGGTCAGAATAAGCCTAACATACATCATAACAGCAAAAGACTTAGATCTGTTAAGGTCCTATCCTTAGTTTCTAATCTGTCTCTCCCCTTCGTTTTCCCTCTCTCCCTCTCCAAACCTTTGCAACAGATGGCTGACAATGAGAAAGGCAATAAGGTCAGGAGTCAGGACATTGGTACCTCAAGCTCCCGAGTGAATGAAGCACAAGACACCAGTTGTGCGGCAGTGGTCCAACACCTGATTAACCAGAACAAATTGCTTATAGAGATACTACAGCAGCATCGGATGCCAATTTTGAACCCGAGTCAGATGCAACCTCAGGTGCAGTTGGAGGCAGTCCAAGCACTCACACCACAAGTCAGCGCACCGCCAACATCCCAGAAGGCCCCTCATGCCATGCCACATGTTGACCCAAAAGAAGCAAGTATCATCTGTTTTATGTGTGATGAGCAAGGGCACTACGCAAGGAACTGTCCTCAGCAGAAAAGAAAAGCACCAATGCGAACCGAAGGTGAAGTTCGTAAGATGATCATTACCAGCACAGAATGGCCTCCACCAGGAATGACAAGACGTCAGAGAAGAAACACCTTCCGAGGTGCACCACAGTTGACAGAGCATCTTTTAGCTAATGGAGGTAGAGTGTCTGATAGTGAAGATTCAGATCAAGTCTCCTCAGAAGATGAAGATGAGAAATCTCCCCAAGGTTTCAACCAGGATAAAATGGAACGTAAGGCATGCTCTCGTTGTGGAGAAATCGGACATGTTGCCAGCTCGTGTGCCTCTACATGCGTTCATTGTGAGGAAGACCATCCACCCGACAGGTGTCCAACGAGCAGGATCACTTGTTTCTTTTGTGAAGGAACTGATCATGTACCAAAAGATTGTCAATTCAGTTTTCTGCTGACGAAGAAGATGGCTAACCAACCCGCCGGTTTCAACGGAGAGAAGCATCAAGGCAACACCAATCCTCGCCAAGATTACAGTTTCAGCCTAACTCCAGTGCCAGGACAGAGGAATCAAAATGAGAAAAGAAAATGCCGAGTCCGGGAAGATATCTGTTGCTTCAATTGTCAAGGAATGGGTCATTTCGCCGACAAGTGCCCAAAACCGAGAAACATAGCTGCCGGCACGTCAGTCCACGCAACTCCCTGCAATCAGAAGCTTGCTCCTCAACGAATGGTCATCCATGCATCCCGAAGCAGTCCTATAGCCCGCGTTGCAACAGCTCCAATTCCAATGAGTGCACTACCACAAGGTGTCAATGCTCAATTTCAGCCCCAGCCACCAGCTGACAAGACAGATGCCAGTATCTGCGTTGTACCTTTAGAAGCTCCAATACAGCAGCTGAGAAATCAAGTACAAGATGAAGAACCCGAGTGTAAGAAAGTTATTGTTTGTCACAACTGCAGTGGAGAAGGGCATTACTCCAAAAACTGTCCCCGACCTCCACATTTTCGCCAATTTACACGAAGCAGACATTCCAATCGTATTGTGGTCACTGGAGCAAACGCCGTACCCGTAAGGCCTCGTGTTAATCAGAACCCATAG
More
|
||||||||||
Protein seq | MYTSDQSKSIRIAEPSDMGKPSNVPRSVFQFLKFAQQLKYGMVGLGWLGTSWDPGSGCQFGPIHRRPWVKAVPLFSFPQCFLQKVYSVLPSSDFQLVLDGQNKPNIHHNSKRLRSVKVLSLVSNLSLPFVFPLSLSKPLQQMADNEKGNKVRSQDIGTSSSRVNEAQDTSCAAVVQHLINQNKLLIEILQQHRMPILNPSQMQPQVQLEAVQALTPQVSAPPTSQKAPHAMPHVDPKEASIICFMCDEQGHYARNCPQQKRKAPMRTEGEVRKMIITSTEWPPPGMTRRQRRNTFRGAPQLTEHLLANGGRVSDSEDSDQVSSEDEDEKSPQGFNQDKMERKACSRCGEIGHVASSCASTCVHCEEDHPPDRCPTSRITCFFCEGTDHVPKDCQFSFLLTKKMANQPAGFNGEKHQGNTNPRQDYSFSLTPVPGQRNQNEKRKCRVREDICCFNCQGMGHFADKCPKPRNIAAGTSVHATPCNQKLAPQRMVIHASRSSPIARVATAPIPMSALPQGVNAQFQPQPPADKTDASICVVPLEAPIQQLRNQVQDEEPECKKVIVCHNCSGEGHYSKNCPRPPHFRQFTRSRHSNRIVVTGANAVPVRPRVNQNP |
||||||||||
Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
LOC_Os08g20330 | LOC_Os08g20330.1 | Chr08 | 12209511 | 12212187 | + | MSU_osa1r7 | ||
CDS seq | ATGTACACCTCTGATCAGAGTAAATCTATTCGAATAGCCGAGCCCTCGGATATGGGCAAGCCTAGCAATGTACCCAGGTCAGTGTTTCAATTCTTAAAATTTGCTCAACAACTAAAATATGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCCAATTCATCGTAGGCCTTGGGTTAAGGCAGTTCCTCTTTTCTCCTTCCCCCAATGCTTTTTGCAAAAGGTTTACTCCGTTCTTCCTTCTTCGGATTTTCAACTAGTACTAGATGGTCAGAATAAGCCTAACATACATCATAACAGCAAAAGACTTAGATCTGTTAAGGTCCTATCCTTAGTTTCTAATCTGTCTCTCCCCTTCGTTTTCCCTCTCTCCCTCTCCAAACCTTTGCAACAGATGGCTGACAATGAGAAAGGCAATAAGGTCAGGAGTCAGGACATTGGTACCTCAAGCTCCCGAGTGAATGAAGCACAAGACACCAGTTGTGCGGCAGTGGTCCAACACCTGATTAACCAGAACAAATTGCTTATAGAGATACTACAGCAGCATCGGATGCCAATTTTGAACCCGAGTCAGATGCAACCTCAGGTGCAGTTGGAGGCAGTCCAAGCACTCACACCACAAGTCAGCGCACCGCCAACATCCCAGAAGGCCCCTCATGCCATGCCACATGTTGACCCAAAAGAAGCAAGTATCATCTGTTTTATGTGTGATGAGCAAGGGCACTACGCAAGGAACTGTCCTCAGCAGAAAAGAAAAGCACCAATGCGAACCGAAGGTGAAGTTCGTAAGATGATCATTACCAGCACAGAATGGCCTCCACCAGGAATGACAAGACGTCAGAGAAGAAACACCTTCCGAGGTGCACCACAGTTGACAGAGCATCTTTTAGCTAATGGAGGTAGAGTGTCTGATAGTGAAGATTCAGATCAAGTCTCCTCAGAAGATGAAGATGAGAAATCTCCCCAAGGTTTCAACCAGGATAAAATGGAACGTAAGGCATGCTCTCGTTGTGGAGAAATCGGACATGTTGCCAGCTCGTGTGCCTCTACATGCGTTCATTGTGAGGAAGACCATCCACCCGACAGGTGTCCAACGAGCAGGATCACTTGTTTCTTTTGTGAAGGAACTGATCATGTACCAAAAGATTGTCAATTCAGTTTTCTGCTGACGAAGAAGATGGCTAACCAACCCGCCGGTTTCAACGGAGAGAAGCATCAAGGCAACACCAATCCTCGCCAAGATTACAGTTTCAGCCTAACTCCAGTGCCAGGACAGAGGAATCAAAATGAGAAAAGAAAATGCCGAGTCCGGGAAGATATCTGTTGCTTCAATTGTCAAGGAATGGGTCATTTCGCCGACAAGTGCCCAAAACCGAGAAACATAGCTGCCGGCACGTCAGTCCACGCAACTCCCTGCAATCAGAAGCTTGCTCCTCAACGAATGGTCATCCATGCATCCCGAAGCAGTCCTATAGCCCGCGTTGCAACAGCTCCAATTCCAATGAGTGCACTACCACAAGGTGTCAATGCTCAATTTCAGCCCCAGCCACCAGCTGACAAGACAGATGCCAGTATCTGCGTTGTACCTTTAGAAGCTCCAATACAGCAGCTGAGAAATCAAGTACAAGATGAAGAACCCGAGTGTAAGAAAGTTATTGTTTGTCACAACTGCAGTGGAGAAGGGCATTACTCCAAAAACTGTCCCCGACCTCCACATTTTCGCCAATTTACACGAAGCAGACATTCCAATCGTATTGTGGTCACTGGAGCAAACGCCGTACCCGTAAGGCCTCGTGTTAATCAGAACCCATAG
More
|
|||||||
Protein seq | MYTSDQSKSIRIAEPSDMGKPSNVPRSVFQFLKFAQQLKYGMVGLGWLGTSWDPGSGCQFGPIHRRPWVKAVPLFSFPQCFLQKVYSVLPSSDFQLVLDGQNKPNIHHNSKRLRSVKVLSLVSNLSLPFVFPLSLSKPLQQMADNEKGNKVRSQDIGTSSSRVNEAQDTSCAAVVQHLINQNKLLIEILQQHRMPILNPSQMQPQVQLEAVQALTPQVSAPPTSQKAPHAMPHVDPKEASIICFMCDEQGHYARNCPQQKRKAPMRTEGEVRKMIITSTEWPPPGMTRRQRRNTFRGAPQLTEHLLANGGRVSDSEDSDQVSSEDEDEKSPQGFNQDKMERKACSRCGEIGHVASSCASTCVHCEEDHPPDRCPTSRITCFFCEGTDHVPKDCQFSFLLTKKMANQPAGFNGEKHQGNTNPRQDYSFSLTPVPGQRNQNEKRKCRVREDICCFNCQGMGHFADKCPKPRNIAAGTSVHATPCNQKLAPQRMVIHASRSSPIARVATAPIPMSALPQGVNAQFQPQPPADKTDASICVVPLEAPIQQLRNQVQDEEPECKKVIVCHNCSGEGHYSKNCPRPPHFRQFTRSRHSNRIVVTGANAVPVRPRVNQNP
More
|
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g17150 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0194900 | SBH | 0.0078785 | 0 | 0.01858 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0198500 | SBH | 0 | 0 | 0.009521 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |