Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g19260 | OGI:08032270 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:11519795-11522096 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATTCCAACAGTGAACAATTTCTTTCAGCTTGTTACTGAGTTTCAAGAACACACTAAAATCCACTAGGCCAGATAGTTCATCTAAGATATCGCCCTTGTAATAGTGAAGCACATCTTTTGTTAATTCTCTAAGACTTCTAATAACATGGGCTTTTCTAGTGAAGTTGTCATCATTCAGCAGGGTGTCTTCCACTGACTCAGTGAATGCACTGTCATGAACCCCTTTTAAACTCTGATACCTGATATTGCTACCTGACTCATTATACGTCTAGCAATAGGACGGGACGATTCCATCTTGAGAAACTTAGGGTGCACAAGGTCCAAGATGTTAAACACTTCCGAAACGTGGTTCTGGAAAAGTGTACCAGACAGGACCACTTTGCGTGGTGTCTTTTTAGTGATGCCAGTACATCTGTCTCCCGATTTCTTGGTGTATGACCCTCGTCTAGTATAAGTAGGTTGGGTACCATAAGCAGCCTGTCCCAGCACGCAGCTGCAATGTTTCCATCTCCATCACCACAGATGATTCGTGAGAACTGCTTGTATCCAAGAAATAGTATGCTCATCTGGGCTTCCCAATATTTGAGGACTTCCAGTTGCTCTACTCTTTTGTCAGCCTTAACAGAATAGAAATCATATAGTGGTATGTCCTCCACTTGCCACCACTGAAACTCCCTCTTCCAAGTACCTAATTTACACCCTACTTACACACCACTTACAAATGTAAATTAGTATGTAATTTTGGGACTTACATATGTAATTTTTTCTGACATCACCCTGCTCGCCAACATAGATCCAGCCCTTCCTATTGAGAACTCTACCTTGTATCACCGGTTCGCTGTAGAGTGCCTAGTTGATTTTTTCCAAAACCTGTTTTCAAGCTCTTCAATTTAAAGAAGGTAAGCAATTTCTGCAACGTGTTCTTCTCGTAGCATATGTAATTTTAGGACTTACATATGTAAGTTTGGGACTTACATTGAAAACACTAAAAATACATATGTAATTTAGGGACTTACAATGTAAATACATGCCGACTAATTTTTGTTAAAAAATATGGCGCCATAAATATAGCTACTCCCAATCCCTTTCGGAAGCACTACAAGGGGCCTTGCAGAAGGATACTTTGCTAAGAAGCTTTGAATGAAACTTATGAGCATAAATGTCTTCCCTGAACCAGGAGCATGAGCTAGAATGCAACCTCCAGGTTTGTCTCCGACTAGATTCTTGACCAGGAAGCTGAATCCTTCCAACTGATGTGGTCTCATTTGCTTCGCATGTCTTGGATGAATGGCAATATCAGAGACAATGAAATCTTCGGAAACTTTAACAGCACCAGTATCAATCTCATCAGCATCCTTTGAACGTGATTCATAGTAATTTGTTCTTGTCCTTGAAGCCTGATATAATGTAAGCATGAAGTTAAATTTTCTTATCCACATGAAAATCCAACAAACTTTAGAAAACTGATGCAAGCATTCCATCTTTACTACAGGACCCATGCTCTGAATACTGCCAAGGCTCGCAGCTTAGCTCATGTACAAGCCACTAAAGAAATCCATATGATTTCCAAAACGACTATTACTACATACTCCAAAGTGGTATCAATATCAAAAGAGTTGATAATGAAAACACTCCCCCATTTTAGGAAGTAGTATTTCAGTAAAGAAAAGGTCCCCCATAGCATGTTTTTCTATAAAAGAAACCAGAATCCCTAGAGATTCACAGTAAATCTAACGAGCATTACAAAAACCGTATGTGTGAGAACTATATGTCAGTAATTTTTATTTCGTTCAGCATGAATCCACAAATTTCTCTTGATCGTGATGCCCTTCCACTGCCTAAAGACCTTCAAGGTACTATGTGCCTTAATATTAATAGCATTTGTGTAGGAAGTGAAGAAAATGATTTTTGACATGAACACGGCAAAGTGGATACAGCTGGTGTGTAGGTGTGGGGAGGTCTACTGCGCGAACGCGCGCGAGATATGGAAGACACGAACGGATTCAAAATTTCCAGTTTTGTCTACCGCGTGCATGGAGAGACAGATCCAAACTTTTCTGATTCGGTTATCATGTCGTGAAACTCTAGCGGCCTGTTTGGTTGGAGGGAGTTTTTAGGAAGGATTGGGAGTTTAGAGGGATGAGGCTATTAAGTGTTTTGTTTGGTTGGGAGATATGAGAATTTTGGTGAGATGGGGATGGAAAATTGAGGAAGGAACTCCCTCCTTTTCAATAACTGGGTAGGGGCAGGTAATTGGGAGGGAATTCCTCCTTTACTTTGTCTAAGCAAATATCAGCCAT
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| CDS seq | ATGGCTGATATTTGCTTAGACAAAGCTTCAAGGACAAGAACAAATTACTATGAATCACGTTCAAAGGATGCTGATGAGATTGATACTGGTGCTGTTAAAGTTTCCGAAGATTTCATTGTCTCTGATATTGCCATTCATCCAAGACATGCGAAGCAAATGAGACCACATCAGTTGGAAGGATTCAGCTTCCTGGTCAAGAATCTAGTCGGAGACAAACCTGGAGGTTGCATTCTAGCTCATGCTCCTGGTTCAGGGAAGACATTTATGCTCATAAGTTTCATTCAAAGCTTCTTAGCAAAGTATCCTAGGCACTCTACAGCGAACCGGTGA |
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| Protein seq | MADICLDKASRTRTNYYESRSKDADEIDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPRHSTANR |
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| Function | Protein CHROMATIN REMODELING 35 [UniProtKB/Swiss-Prot:Q9SIW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g19260 | LOC_Os08g19260.1 | Chr08 | 11519795 | 11522096 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGATATTTGCTTAGACAAAGCTTCAAGGACAAGAACAAATTACTATGAATCACGTTCAAAGGATGCTGATGAGATTGATACTGGTGCTGTTAAAGTTTCCGAAGATTTCATTGTCTCTGATATTGCCATTCATCCAAGACATGCGAAGCAAATGAGACCACATCAGTTGGAAGGATTCAGCTTCCTGGTCAAGAATCTAGTCGGAGACAAACCTGGAGGTTGCATTCTAGCTCATGCTCCTGGTTCAGGGAAGACATTTATGCTCATAAGTTTCATTCAAAGCTTCTTAGCAAAGTATCCTAGGCACTCTACAGCGAACCGGTGA
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| Protein seq | MADICLDKASRTRTNYYESRSKDADEIDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPRHSTANR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0289400 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g14440 | SBH | 1.504406 | 1.484943 | 1.946629 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0289400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010150 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0010240 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010340 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010220 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010100 | SBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0175800 | RBH | 0.089934 | 0.253316 | 0.193416 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010140 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0177700 | RBH | 0.120105 | 0.039798 | 0.4113715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0009710 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0009870 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0009730 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0010500 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0009840 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009980 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0009960 | SBH | 0.0 | 0.0 | 0.000000 |
