Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g16070 | OGI:08027560 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:9795796-9798581 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGATATCAACACTGGTCTCAGAGTCTCGAAGAGAATGCTGCCACCGAAAATCTTTAATCGAAGAGGACTGCAATAACTCAAGGAATTCCTTGGTGATTTCCAGAAAGCCTAGATATTTCAGGGGCATGAGGAACTGAATGCCCAACGGGACGTCCCTCATGTTTTTGAGGTTAACCAGTGTTAGCCGTTGCAGTTTCTTCATGGCGTCTTTTTGAACCACCAGCCATTTCAGATTACGCATGTCTCTTAAGAAGAGTATCCTAAGGTTGGGAAACCACTCAGAAAGAAACACCAGCCTCTCTCCAATGTATGTGTTGGTTAGCCTCAGGTCTGTCAGATTCAACAGCAGGGAGAGGGATGGCAGAGGGTCTTGTTCCAATTGGGACCAATACAGCCGTAGCTCATACAGGTTTCGCCTTGCTGCGTGATGGAAGAGGGGAGACTCCTCCTGCAGTATATCATCTGCTAGCCGCCCTCGCAAGAACAGCCTCTGAAGGTTGGGAGGCGGCGGGTTCATCTCTTCCAGCTGGAGAGCCTCGTTTTCGTTGCTCGCCACAATGTACAGGTTGGACAGGAATTGTAGCTTAACAAGAGATGTGCAAAGGCGTCCACTGTAGGCTCCTTTCACGTTCCATACTCTGAGGCTTCGTAGCTGCCTCAGCTCTCCGAGATGCCTGATGGACTCCTCCTGTGCCTCCAGCCCATGTAGCGTCCGAAGGCTCGTCAGGTTACCGAGACCCTTGTGGAAGCGCACACCAGTGCAGCAACGGAAATTTCTCCAGGTTGCATCGTGCAGTTTCTCGGCAAATAAGTGCCTAAGCTTCTTCAGCTTGACGATCCTTCTTGGCAGACACCGTATGTCTGATCCAGAAAGGTCCAGCGTCAGCAGATTGGACAACTTCTCGATGGACTATGGGAGGAACTTCACCTTTGAGCCTCGCAGACCCAAATGGTGCAGATTGAAAAGATTACCAATAGCATTGGGAACTGTCTTGATGGGTACTCCACTTAGCTCAAGCACGGACATGTACCTGGAGTTGTCCAACACAGAGGATAAAATAATGGATGATGGAGTGCTCTTATCCAGGACAATGATAGAGCGGAGCCGGTACACACCTAAAACCGACTGACCAACGTCCTCGTGGAATTTTTGTATTACCAGTCGACGTTCATCATTTTCCTCAAGGGATCTCCCATGATGACCATCCTCATATGTAATGCCAAAACATTCTCTCCGACACAAGTCAACCGCGAGCTCACGCACGATATCGTGCATTTTGAATCTTCTTATCCTACCAAATGAGTTCTTTTGGACCAGTTGCAGCATGTTCCTGTGAACCAACTCTTTTAGGTAGCCTTCTGCCACTTCCTCTAGTGTGCTTTCACCCTTTTCCACAATGAACCTTTCTGCCACCATAGCCGTACAAGTTCCTTTCTTTTAAGAGGATAGTCCTCTGGAAACAAACTGCAGTATAGGAAACAACTTTTCAGGTAAGAAGGAAGGTATATGAAGCTCAAGAGTAATACATTCCTGACATGATCTAGCCTTGGATTGTTGATTATCTCCCAGCTGAGCTGATCATTAATCCGTTTCCATTCTTCCGTGGTTTTCTCACGCACAAACAAGAGACTACCAACAGAGACAATAGCAAGAGGCAAGCCTTTGCACTTGCTGACGATTTCCACGGAAATATCATTTAGCTTTGCAAGACATTTGTCATCTGTATCACTCCGGAAGGCCTTTTTACAGAACAACTCCATTGCCTTGTCACTTGGTAAAGTTTTCAGTTCAACGACATAATTCTTAGAAGCAAGGCCGGCTACTTCACTGTCTCGTGTTGTAATTACAAGCCTGCTTCCAGTGCCGTTATGAACAAGTGCATTAGACAAGTCAGTGAATGCTTCTGTACTCCAAACATCATCTAGTACGATCAAGTATTTCTTCTCCACTAGAAAAAGATGCAGTTTCTCTTCAAGGGATGTGATGTCCATCGTGGCAATGTCAGTTGGTACGTCCTCTATATCTTTGAAAAGCTTCCCAATTAAATTTCTCAAAACACCTTGTCTTGAATATGTTTGAGAGATGGATACCCAGGCATGGCATTCAAACTTTTCCTTCGCCCTCCTGTAGATATTTGCAGCAAGGGCTGTTTTGCCAAGCCCTCCCATCCCAAGCAGGGCTATCACAAGGTGTGCAGGTTCATCATCTTCAAGCCACTTTTCCAAATCCCTCCTGTAATCATCAATCCCCACAAGATCTTCATCACTGATGGAACATGAAGTGGCTGCCAAATGCTGAGATCTCTCGACAATGTAGCTTGAGTTGTCGTTACTGTCACTTGGAAGCAAAACCCATCGGTCCTTGGCCTGAAACAGGTGCACCAGATTGACCTCGGCTTCTTTAACCAATGAAGCTATCCTGTTCAGGGATACCACGACATTGGGTCCCTTGATTCCTTTCTTCAGATAGGTGCTCCATCCAGTGTCAAGCTTCTGACCGATAAGATGCAAATATTCGTCCACAATGTCTTCGATCCCATGTACAAGTACTCGTCCCTCCTCCACCCAGATTTCATATGTCTGGTTATTACGGTTGCGTACATCCATTCGACAGAGAAACTCATGCATCAACCGGAGCTCCCTCCTGATGCGGCCCATGCTGCCTTGAAGCTCTGTTAGCTGCGTGACAAACTTCCTGAAATACGAAACAGCCTGGCTGGTTGCTTCATTTCCCAATGCAACACCGATCTTCCTCACAGCAAAAAGAATCACGGCCTCAGCCAT
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| CDS seq | ATGGCTGAGGCCGTGATTCTTTTTGCTGTGAGGAAGATCGGTGTTGCATTGGGAAATGAAGCAACCAGCCAGGCTGTTTCGTATTTCAGGAAGTTTGTCACGCAGCTAACAGAGCTTCAAGGCAGCATGGGCCGCATCAGGAGGGAGCTCCGGTTGATGCATGAGTTTCTCTGTCGAATGGATGTACGCAACCGTAATAACCAGACATATGAAATCTGGGTGGAGGAGGGACGAGTACTTGTACATGGGATCGAAGACATTGTGGACGAATATTTGCATCTTATCGGTCAGAAGCTTGACACTGGATGGAGCACCTATCTGAAGAAAGGAATCAAGGGACCCAATGTCGTGGTATCCCTGAACAGGATAGCTTCATTGGTTAAAGAAGCCGAGGTCAATCTGGTGCACCTGTTTCAGGCCAAGGACCGATGGGTTTTGCTTCCAAGTGACAGTAACGACAACTCAAGCTACATTGTCGAGAGATCTCAGCATTTGGCAGCCACTTCATGTTCCATCAGTGATGAAGATCTTGTGGGGATTGATGATTACAGGAGGGATTTGGAAAAGTGGCTTGAAGATGATGAACCTGCACACCTTGTGATAGCCCTGCTTGGGATGGGAGGGCTTGGCAAAACAGCCCTTGCTGCAAATATCTACAGGAGGGCGAAGGAAAAGTTTGAATGCCATGCCTGGGTATCCATCTCTCAAACATATTCAAGACAAGGTGTTTTGAGAAATTTAATTGGGAAGCTTTTCAAAGATATAGAGGACGTACCAACTGACATTGCCACGATGGACATCACATCCCTTGAAGAGAAACTGCATCTTTTTCTAGTGGAGAAGAAATACTTGATCGTACTAGATGATGTTTGGAGTACAGAAGCATTCACTGACTTGTCTAATGCACTTGTTCATAACGGCACTGGAAGCAGGCTTGTAATTACAACACGAGACAGTGAAGTAGCCGGCCTTGCTTCTAAGAATTATGTCGTTGAACTGAAAACTTTACCAAGTGACAAGGCAATGGAGTTGTTCTGTAAAAAGGCCTTCCGGAGTGATACAGATGACAAATGTCTTGCAAAGCTAAATGATATTTCCGTGGAAATCGTCAGCAAGTGCAAAGGCTTGCCTCTTGCTATTGTCTCTGTTGGTAGTCTCTTGTTTGTGCAAAGGTTCATTGTGGAAAAGGGTGAAAGCACACTAGAGGAAGTGGCAGAAGGCTACCTAAAAGAGTTGGTTCACAGGAACATGCTGCAACTGGTCCAAAAGAACTCATTTGGTAGGATAAGAAGATTCAAAATGCACGATATCGTGCGTGAGCTCGCGGTTGACTTGTGTCGGAGAGAATGTTTTGGCATTACATATGAGGATGGTCATCATGGGAGATCCCTTGAGGAAAATGATGAACGTCGACTGGTAATACAAAAATTCCACGAGGACGTTGGTCAGTCGGTTTTAGGTGTGTACCGGCTCCGCTCTATCATTGTCCTGGATAAGAGCACTCCATCATCCATTATTTTATCCTCTGTGTTGGACAACTCCAGGTACATGTCCGTGCTTGAGCTAAGTGGAGTACCCATCAAGACAGTTCCCAATGCTATTGGTAATCTTTTCAATCTGCACCATTTGGGTCTGCGAGGCTCAAAGGGTCTCGGTAACCTGACGAGCCTTCGGACGCTACATGGGCTGGAGGCACAGGAGGAGTCCATCAGGCATCTCGGAGAGCTGAGGCAGCTACGAAGCCTCAGAGTATGGAACGTGAAAGGAGCCTACAGTGGACGCCTTTGCACATCTCTTGTTAAGCTACAATTCCTGTCCAACCTGTACATTGTGGCGAGCAACGAAAACGAGGCTCTCCAGCTGGAAGAGATGAACCCGCCGCCTCCCAACCTTCAGAGGCTGTTCTTGCGAGGGCGGCTAGCAGATGATATACTGCAGGAGGAGTCTCCCCTCTTCCATCACGCAGCAAGGCGAAACCTGTATGAGCTACGGCTGTATTGGTCCCAATTGGAACAAGACCCTCTGCCATCCCTCTCCCTGCTGTTGAATCTGACAGACCTGAGGCTAACCAACACATACATTGGAGAGAGGCTGGTGTTTCTTTCTGAGTGGTTTCCCAACCTTAGGATACTCTTCTTAAGAGACATGCGTAATCTGAAATGGCTGGTGGTTCAAAAAGACGCCATGAAGAAACTGCAACGGCTAACACTGGTTAACCTCAAAAACATGAGGGACGTCCCGTTGGGCATTCAGTTCCTCATGCCCCTGAAATATCTAGGCTTTCTGGAAATCACCAAGGAATTCCTTGAGTTATTGCAGTCCTCTTCGATTAAAGATTTTCGGTGGCAGCATTCTCTTCGAGACTCTGAGACCAGTGTTGATATCTAG
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| Protein seq | MAEAVILFAVRKIGVALGNEATSQAVSYFRKFVTQLTELQGSMGRIRRELRLMHEFLCRMDVRNRNNQTYEIWVEEGRVLVHGIEDIVDEYLHLIGQKLDTGWSTYLKKGIKGPNVVVSLNRIASLVKEAEVNLVHLFQAKDRWVLLPSDSNDNSSYIVERSQHLAATSCSISDEDLVGIDDYRRDLEKWLEDDEPAHLVIALLGMGGLGKTALAANIYRRAKEKFECHAWVSISQTYSRQGVLRNLIGKLFKDIEDVPTDIATMDITSLEEKLHLFLVEKKYLIVLDDVWSTEAFTDLSNALVHNGTGSRLVITTRDSEVAGLASKNYVVELKTLPSDKAMELFCKKAFRSDTDDKCLAKLNDISVEIVSKCKGLPLAIVSVGSLLFVQRFIVEKGESTLEEVAEGYLKELVHRNMLQLVQKNSFGRIRRFKMHDIVRELAVDLCRRECFGITYEDGHHGRSLEENDERRLVIQKFHEDVGQSVLGVYRLRSIIVLDKSTPSSIILSSVLDNSRYMSVLELSGVPIKTVPNAIGNLFNLHHLGLRGSKGLGNLTSLRTLHGLEAQEESIRHLGELRQLRSLRVWNVKGAYSGRLCTSLVKLQFLSNLYIVASNENEALQLEEMNPPPPNLQRLFLRGRLADDILQEESPLFHHAARRNLYELRLYWSQLEQDPLPSLSLLLNLTDLRLTNTYIGERLVFLSEWFPNLRILFLRDMRNLKWLVVQKDAMKKLQRLTLVNLKNMRDVPLGIQFLMPLKYLGFLEITKEFLELLQSSSIKDFRWQHSLRDSETSVDI |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g16070 | LOC_Os08g16070.1 | Chr08 | 9795796 | 9798581 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGAGGCCGTGATTCTTTTTGCTGTGAGGAAGATCGGTGTTGCATTGGGAAATGAAGCAACCAGCCAGGCTGTTTCGTATTTCAGGAAGTTTGTCACGCAGCTAACAGAGCTTCAAGGCAGCATGGGCCGCATCAGGAGGGAGCTCCGGTTGATGCATGAGTTTCTCTGTCGAATGGATGTACGCAACCGTAATAACCAGACATATGAAATCTGGGTGGAGGAGGGACGAGTACTTGTACATGGGATCGAAGACATTGTGGACGAATATTTGCATCTTATCGGTCAGAAGCTTGACACTGGATGGAGCACCTATCTGAAGAAAGGAATCAAGGGACCCAATGTCGTGGTATCCCTGAACAGGATAGCTTCATTGGTTAAAGAAGCCGAGGTCAATCTGGTGCACCTGTTTCAGGCCAAGGACCGATGGGTTTTGCTTCCAAGTGACAGTAACGACAACTCAAGCTACATTGTCGAGAGATCTCAGCATTTGGCAGCCACTTCATGTTCCATCAGTGATGAAGATCTTGTGGGGATTGATGATTACAGGAGGGATTTGGAAAAGTGGCTTGAAGATGATGAACCTGCACACCTTGTGATAGCCCTGCTTGGGATGGGAGGGCTTGGCAAAACAGCCCTTGCTGCAAATATCTACAGGAGGGCGAAGGAAAAGTTTGAATGCCATGCCTGGGTATCCATCTCTCAAACATATTCAAGACAAGGTGTTTTGAGAAATTTAATTGGGAAGCTTTTCAAAGATATAGAGGACGTACCAACTGACATTGCCACGATGGACATCACATCCCTTGAAGAGAAACTGCATCTTTTTCTAGTGGAGAAGAAATACTTGATCGTACTAGATGATGTTTGGAGTACAGAAGCATTCACTGACTTGTCTAATGCACTTGTTCATAACGGCACTGGAAGCAGGCTTGTAATTACAACACGAGACAGTGAAGTAGCCGGCCTTGCTTCTAAGAATTATGTCGTTGAACTGAAAACTTTACCAAGTGACAAGGCAATGGAGTTGTTCTGTAAAAAGGCCTTCCGGAGTGATACAGATGACAAATGTCTTGCAAAGCTAAATGATATTTCCGTGGAAATCGTCAGCAAGTGCAAAGGCTTGCCTCTTGCTATTGTCTCTGTTGGTAGTCTCTTGTTTGTGCAAAGGTTCATTGTGGAAAAGGGTGAAAGCACACTAGAGGAAGTGGCAGAAGGCTACCTAAAAGAGTTGGTTCACAGGAACATGCTGCAACTGGTCCAAAAGAACTCATTTGGTAGGATAAGAAGATTCAAAATGCACGATATCGTGCGTGAGCTCGCGGTTGACTTGTGTCGGAGAGAATGTTTTGGCATTACATATGAGGATGGTCATCATGGGAGATCCCTTGAGGAAAATGATGAACGTCGACTGGTAATACAAAAATTCCACGAGGACGTTGGTCAGTCGGTTTTAGGTGTGTACCGGCTCCGCTCTATCATTGTCCTGGATAAGAGCACTCCATCATCCATTATTTTATCCTCTGTGTTGGACAACTCCAGGTACATGTCCGTGCTTGAGCTAAGTGGAGTACCCATCAAGACAGTTCCCAATGCTATTGGTAATCTTTTCAATCTGCACCATTTGGGTCTGCGAGGCTCAAAGGGTCTCGGTAACCTGACGAGCCTTCGGACGCTACATGGGCTGGAGGCACAGGAGGAGTCCATCAGGCATCTCGGAGAGCTGAGGCAGCTACGAAGCCTCAGAGTATGGAACGTGAAAGGAGCCTACAGTGGACGCCTTTGCACATCTCTTGTTAAGCTACAATTCCTGTCCAACCTGTACATTGTGGCGAGCAACGAAAACGAGGCTCTCCAGCTGGAAGAGATGAACCCGCCGCCTCCCAACCTTCAGAGGCTGTTCTTGCGAGGGCGGCTAGCAGATGATATACTGCAGGAGGAGTCTCCCCTCTTCCATCACGCAGCAAGGCGAAACCTGTATGAGCTACGGCTGTATTGGTCCCAATTGGAACAAGACCCTCTGCCATCCCTCTCCCTGCTGTTGAATCTGACAGACCTGAGGCTAACCAACACATACATTGGAGAGAGGCTGGTGTTTCTTTCTGAGTGGTTTCCCAACCTTAGGATACTCTTCTTAAGAGACATGCGTAATCTGAAATGGCTGGTGGTTCAAAAAGACGCCATGAAGAAACTGCAACGGCTAACACTGGTTAACCTCAAAAACATGAGGGACGTCCCGTTGGGCATTCAGTTCCTCATGCCCCTGAAATATCTAGGCTTTCTGGAAATCACCAAGGAATTCCTTGAGTTATTGCAGTCCTCTTCGATTAAAGATTTTCGGTGGCAGCATTCTCTTCGAGACTCTGAGACCAGTGTTGATATCTAG
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| Protein seq | MAEAVILFAVRKIGVALGNEATSQAVSYFRKFVTQLTELQGSMGRIRRELRLMHEFLCRMDVRNRNNQTYEIWVEEGRVLVHGIEDIVDEYLHLIGQKLDTGWSTYLKKGIKGPNVVVSLNRIASLVKEAEVNLVHLFQAKDRWVLLPSDSNDNSSYIVERSQHLAATSCSISDEDLVGIDDYRRDLEKWLEDDEPAHLVIALLGMGGLGKTALAANIYRRAKEKFECHAWVSISQTYSRQGVLRNLIGKLFKDIEDVPTDIATMDITSLEEKLHLFLVEKKYLIVLDDVWSTEAFTDLSNALVHNGTGSRLVITTRDSEVAGLASKNYVVELKTLPSDKAMELFCKKAFRSDTDDKCLAKLNDISVEIVSKCKGLPLAIVSVGSLLFVQRFIVEKGESTLEEVAEGYLKELVHRNMLQLVQKNSFGRIRRFKMHDIVRELAVDLCRRECFGITYEDGHHGRSLEENDERRLVIQKFHEDVGQSVLGVYRLRSIIVLDKSTPSSIILSSVLDNSRYMSVLELSGVPIKTVPNAIGNLFNLHHLGLRGSKGLGNLTSLRTLHGLEAQEESIRHLGELRQLRSLRVWNVKGAYSGRLCTSLVKLQFLSNLYIVASNENEALQLEEMNPPPPNLQRLFLRGRLADDILQEESPLFHHAARRNLYELRLYWSQLEQDPLPSLSLLLNLTDLRLTNTYIGERLVFLSEWFPNLRILFLRDMRNLKWLVVQKDAMKKLQRLTLVNLKNMRDVPLGIQFLMPLKYLGFLEITKEFLELLQSSSIKDFRWQHSLRDSETSVDI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0260800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35580 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0260800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008970 | RBH | 0.067939 | 16.602053 | 0.681924 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0009020 | RBH | 0.0 | 3.642721 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0009200 | RBH | 1.092237 | 12.668548 | 0.412265 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008990 | RBH | 0.051176 | 0.222091 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008940 | RBH | 0.0 | 1.057265 | 1.056123 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0151800 | RBH | 0.0147425 | 0.046195 | 0.0046725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0009010 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0148200 | RBH | 1.3106685 | 7.9840025 | 0.0493055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0008540 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008730 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008570 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0009290 | RBH | 0.0 | 0.430795 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008750 | RBH | 0.0 | 0.0 | 0.0 |
