Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g07560 | OGI:08010890 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:4248194-4252995 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGGTGGCAACAGGAGGCCTGTCACACGCCTCGCCCCGTCCCGTCGGAATGATGAGAGCTTCCTGGCTCTCGTCCCTAGCCGGAGCCGGCGTGCTAACTCCTGGAGTTGGTATGTCAGTCCCGGTCAGATCCATTCCAGGCTTCAGCGCAAGTATGGCAAGGAAGTCGCTGGCCATTAAATGAAGGTTGAAATGGGCGTCCACGGGGAAAGCGGGCGAGTGGGGCAGGAGGCGTGTGCTCTGCTTATCAGAGGTCACTTCCGGCTGTAGACTAGCCCTCATTGTAAAAAGCATGTTTCCCTTCTTAGGTAGCTAGAGGCCATGTGGTGACCCCTGACCAGATAAAAAGGAGGCCCAGGCCTAAAGGGAGGGGGGGTTGGGACTCTGGCGGATGGGTTCTAGAGCCTGAACTCTCTCTCGCTCTCCGGCTCTCTGTATTCCTTCACACACAGATCCACCAGAACACAGGAGTAGGGTGTTACGCTTCTCAGCGGCCCGAACTTGTCTACGTCGCCCGTGTCTTGTGCACTTCCTCTCTCGCTGACGTTCCTCAGATCGAGGGCAAAGAACCTCACTTAGCGCCCCCGGCCGAACCGGCAAAGGGGGGCCTGCGCGGTCTCCCGGTGAGGAGCCCCACGCTCCGTCACACATATATATATATATATATATATACATATAGATACATATAGATACATACACATATATATAAATACACATATATATACATATAGATACATAGACATATATATACATATTGATACATACACATATATACACATATATATACATACACATATACATATACATATATATATATATATATATATATATACATATACACACACATATATATACTCCGTCCTGAAGTTGCTTCTATTGGGCTAGTCTTAATGATATATTCTGGGTTGATTATATTAATTTTACACTCAATAGCATTTTTCTCCCAATATTTCATAGGAATTTCTCCTATAATTTGGATATCTTCTAATCTTTGAATATTTTTTTCTATATCCCTTTTAGACTTAATATCTCTATACCAATTTGGTGCAAATGCTTGTAGTCCTATGCACTCTATGTTGGAATTTGATATATAATAGTTGTCTATATTCGGAATTTGATATATAATAGTTGTCTATATTCTCACTAAGCTCATATTCATTAATTCTTTCTTTAGGCTCAAGATTGGGTACTTCTAAGTTGTCGAGTTTGGGGGAGACTCCACCACGCTTTCGTACCTCTGAGATATATGGAACATTATTTTGATATGGGATAAAAGTAATTCCTTGCTCATGTATTACTGTGGTTTGTACTGATTGTTGAAGGAACCTTAGGCCAATTATTATGTCATCATTAATCATTGACAAATCTCTTATTGTAATCTCATCTATTATATATTTAGTTGCATTAATGTAAACCTCCATATTATAAGCTAACTGATTATGAATTTTCTTTATTCCGGACATGTCTGTGGAAACTTCTGCCTTATTGTCGTCAATTGTGTGAACTATTTCAGGACATCTTATGAAATATTTGTCATGAATAATATTCTTTTTACACCCGGTGTCTACTAGTGCTAATATTTTATAAGATACTTTGGGTGTCAATTTTATTTTAACAGGGATTCTTATACCTAATATTTCTTTGAAAGGCAATCTTACTATATATTTTTTTCCAAAATTAGTTATGGCCTCTCTTAGTTGAATTATTTTAGCAGTATTACTGTCTTTTAATGTTATCAATTGCTCTTTAAATTCGGTGTTTTGTATGTCCTTATTCTCTGGTAATGCCTTAATATCGCAATTATTTTTTAGGTTCTCTAATTCTACTTCTAGTTTATTTAGTCTATTTTCTAACACTCGTACTCTACTAGATAAAGTCTTTTCATCTGATTCTAATTCTATTTCTTTTCTCCATTTTTGTTTATTTGCTTTTATACATTCAGCACAAGCTTGTTTTAGACATATACTACAAGTCACTCTATTTTCTTGACTAGGGTAATATATGCAAAAAGCACATTTGATATTATAGTCACCCTTTCCTCTAATCCAATCATGTTTACAATTTAATTGATCCATCATTTCAACCTTTAGACCTGCTAATTCGTCAATTAAATCTAACTCTTCATCGGATGATTCATATTCTTCGTTGATAGTTTCAACTTCGTCTGTTTCTATGATAGAATATATTGATTCGTCATCTTTTATTTCATCATCACATACTAATATGTTTTCGTTTACGCTATCTATAATTAGAACCCTCTCTTGTTCTTCATATTTACTAGAATATCTCTTTTGATTTTTATTTGGGCATGTTCTACTTAAATGATCTGGCGAGTTGCATATAAAACATCTGCATGTTTTGTCATAGGTTTTCTTTGGATTATATCTTCTTACATTTCTTTTATGTAAGAAGGGTGCTCTATTATCTGATCTTCTTAAGAAATACCTTTTCTTTGTTCTAATATTATTATGGTTTCTATTTTGATGTTTATAAATCCTTTTACTTCTAGGCTTGTCTTCTCCATATGATAAGGGTATTTGAACTATTTTATTGCAGAAATTGTAATCCGAGTGTTTCATAGATCTTTGGGCTTGGATACCCGTGCATATTTTTCTTAGTTGCTTAAACACAAAAGTTATGGCTTGAGAGATGTTGATTTCAGCTCCTTCAGTTTCCTTTTTATATTCTTCAAATATCATACTTCCTAGTGGGTCAGGTAATTTATTGAAATAACGTTCAACTATACCCCTGTTATATCCTTGTTTAGCAGTTGTAGCATTATATAAATAATGTTGGGAGAATTCTTTTATGCCTTTCCAACTTGTTAACGTTAATTTTTCTATTTCTTTTAACCTTTCATTTTGCAAAGTTGTATAACCTAATTCCGGATCTTCAGCTATAATAATGTTAGATATAACATTTGCAAAATTATGCGGATTGCTACCAGCTCTTTTCAATTCTTCATAATTAGTAGGATTCTTTTCAACCCATTGTTCCCATAGAACCTTAGCAGATTCACCTAAAAATGTTTCTAAGTAAGTTATCAAAAATGTTTCTAAGTAAGTTATCATATCTTCAACTTTACTTCCTATATTGTGCTGGTTTTGTATATATTTTTGAACTATTAAACCTTTCCAAATACTAATAATATTAGGCCAATCAATAGGGTCATGTGCGGCTAAATTTAATATAGCACCATCACTCCTCTGGTTTTGAAATTTAACAGGCTTCTCAAAGTCTCTTCTCTTTGTACCCATATGCCTATATTGACCTGGTATATAGTTATATGAAAATTCTTCTCTATAAGGGGGCCATTTTCCTGCTGCCCTAGCTGGTCTTTCTCTTTCTCCTTCGTTTTTCACAGTACCTTCTCCATATCTTTTTCTCTTTCCTGTTCCTAAGTCCACTTCCATAGCTTCCATTGCATTATCAAGATTATGTAACCCTACTTCATCTAATGTGTTTATAAAATCATTATATTGTTCTGCATTGTCTATTTCATTTTCTATGTTCTCCATCTCATTTATTAGATTAATTTCTTCTTCATAACTTTCAAGAAATAATCTTTCATTCTTTGCCCATTGCTCTTCTTCACTTAAAATTTTACAAAGATTTTGCTCTTCTTTGCCATGCTTATCTTGCTCTTTCCTCTTTATCTGTTCTATCTTGGTTTCTTGGTTTTTAAAAATTTCTACTGCCATATCTTCGTTCTTCTTTACTTTCTTTACTCTAGCTAATTCTCTATAGAAATAAAGTTCTTTATCTCTTATTTTAGGCCACTCACACTTCATAGAGTTATTATATTCTTCATTTATTTCCTTTAATTTATTTTCGTAATATTTTATCTCACTTTCTTGATCTAATTTTTCCATAAACTCTGAAACACTATGTCTTCTATTATCTATTATATTTCTATCAGATGCTTCTGTTTCTAAGTCATCTGTGGTTCTGGGTTTGTAATTTATAAATCTAATGCTGGTATTTCCTTTACTATTTTGATAACTTATATAATTTTCAGGCTGACTCAAAATTTTGCTTTCAATTAAATCACTAATTTTCCATTCTTCTCCTGCCCTTTCTTCAGAACTTATTTTTAAAGGGCTCATGAAAGTTATTCCCTTAGAGTGCATATTTTCAATCACGTCATTTACATTTATTTTGTATTTGGAGGCACTTCTATTAGTTAATCTTCCTATAAATTCTATGCTTACTAGCAAATTTGTTCATTTAAATTCCTCGTATCCCTTTATTTGAAAACCAAAACTCATTTTATCTATAAATTCTTTTATAGGCATCATTAGATCTGGGGCTATATATGTTATCAACATATTCTCATTCATGTCACCTTCTAAAAATCCTAATGCTGCTTTATCTATTGTGTCCCACCTTTTATCTAACAGAGTTATTAAAACTTTAGCTCCTAATTTCTTTCTTGTCATACCTTTGATTCCTATTATATACATACCTTAGTGAATATATTTATACCCTGAATACTTTAATCCATTTTCAAATTCCTTGGCTACAATTTTTAACTCAACTGGCTTTGTTAAAACGCTTAACTCTACTTCTCTAGATATTCTGTATAACCCATTTTTATTCTCAAAAAATCCCATGCAATATATTTGTTGAGGTCTTATTGCCCTCAGAGTATCTCTTTGATATCTTTCGAGCTGTTTGTCTACTTCTGCAATATCTTCAAGCTCATCTATGTCTTCATTTTTACCTTTTTGTTTATCAATACAACTTAAAGATTTATCGTCTCTGCTTGCTATTCTTCTAAACAAACTCCTAGATAGGTCCAT
More
|
||||||||||
| CDS seq | ATGGACCTATCTAGGAGTTTGTTTAGAAGAATAGCAAGCAGAGACGATAAATCTTTAAGTTGTATTGATAAACAAAAAGGTAAAAATGAAGACATAGATGAGCTTGAAGATATTGCAGAAGTAGACAAACAGCTCGAAAGATATCAAAGAGATACTCTGAGGGCAATAAGACCTCAACAAATATATTGCATGGGATTTTTTGAGAATAAAAATGGGTTATACAGAATATCTAGAGAAGTAGAGTTAAGCGTTTTAACAAAGCCAGTTGAGTTAAAAATTGTAGCCAAGGAATTTGAAAATGGATTAAAGTATTCAGGAACCACAGATGACTTAGAAACAGAAGCATCTGATAGAAATATAATAGATAATAGAAGACATAGTGTTTCAGAGTTTATGGAAAAATTAGATCAAGAAAGTGAGATAAAATATTACGAAAATAAATTAAAGGAAATAAATGAAGAATATAATAACTCTATGAAGTGTGAGTGGCCTAAAATAAGAGATAAAGAACTTTATTTCTATAGAGAATTAGCTAGAGTAAAGAAAGTAAAGAAGAACGAAGATATGGCAGTAGAAATTTTTAAAAACCAAGAAACCAAGATAGAACAGATAAAGAGGAAAGAGCAAGATAAGCATGGCAAAGAAGAGCAAAATCTTTGTAAAATTTTAAGTGAAGAAGAGCAATGGGCAAAGAATGAAAGATTATTTCTTGAAAGTTATGAAGAAGAAATTAATCTAATAAATGAGATGGAGAACATAGAAAATGAAATAGACAATGCAGAACAATATAATGATTTTATAAACACATTAGATGAAGTAGGGTTACATAATCTTGATAATGCAATGGAAGCTATGGAAGTGGACTTAGGAACAGGAAAGAGAAAAAGATATGGAGAAGGTACTGTGAAAAACGAAGGAGAAAGAGAAAGACCAGCTAGGGCAGCAGGAAAATGGCCCCCTTATAGAGAAGAATTTTCATATAACTATATACCAGGTCAATATAGGCATATGGGTACAAAGAGAAGAGACTTTGAGAAGCCTGTTAAATTTCAAAACCAGAGGAGTGATGGTGCTATATTAAATTTAGCCGCACATGACCCTATTGATTGGCCTAATATTATTAGTATTTGGAAAGGTTTAATAGTTCAAAAATATATACAAAACCAGCACAATATAGGAAGTAAAGTTGAAGATATGATAACTTACTTAGAAACATTTTTGATAACTTACTTAGAAACATTTTTAGGTGAATCTGCTAAGGTTCTATGGGAACAATGGGTTGAAAAGAATCCTACTAATTATGAAGAATTGAAAAGAGCTGGTAGCAATCCGCATAATTTTGCAAATGTTATATCTAACATTATTATAGCTGAAGATCCGGAATTAGGTTATACAACTTTGCAAAATGAAAGGTTAAAAGAAATAGAAAAATTAACGTTAACAAGTTGGAAAGGCATAAAAGAATTCTCCCAACATTATTTATATAATGCTACAACTGCTAAACAAGGATATAACAGGGGTATAGTTGAACGTTATTTCAATAAATTACCTGACCCACTAGGAAGTATGATATTTGAAGAATATAAAAAGGAAACTGAAGGAGCTGAAATCAACATCTCTCAAGCCATAACTTTTGTGTTTAAGCAACTAAGAAAAATATGCACGGGTATCCAAGCCCAAAGATCTATGAAACACTCGGATTACAATTTCTGCAATAAAATAGTTCAAATACCCTTATCATATGGAGAAGACAAGCCTAGAAGTAAAAGGATTTATAAACATCAAAATAGAAACCATAATAATATTAGAACAAAGAAAAGCGACTTCCTTGCCATACTTGCGCTGAAGCCTGGAATGGATCTGACCGGGACTGACATACCAACTCCAGGAGTTAGCACGCCGGCTCCGGCTAGGGACGAGAGCCAGGAAGCTCTCATCATTCCGACGGGACGGGGCGAGGCGTGTGACAGGCCTCCTGTTGCCACCTAA
More
|
||||||||||
| Protein seq | MDLSRSLFRRIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTLRAIRPQQIYCMGFFENKNGLYRISREVELSVLTKPVELKIVAKEFENGLKYSGTTDDLETEASDRNIIDNRRHSVSEFMEKLDQESEIKYYENKLKEINEEYNNSMKCEWPKIRDKELYFYRELARVKKVKKNEDMAVEIFKNQETKIEQIKRKEQDKHGKEEQNLCKILSEEEQWAKNERLFLESYEEEINLINEMENIENEIDNAEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEGTVKNEGERERPARAAGKWPPYREEFSYNYIPGQYRHMGTKRRDFEKPVKFQNQRSDGAILNLAAHDPIDWPNIISIWKGLIVQKYIQNQHNIGSKVEDMITYLETFLITYLETFLGESAKVLWEQWVEKNPTNYEELKRAGSNPHNFANVISNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKGIKEFSQHYLYNATTAKQGYNRGIVERYFNKLPDPLGSMIFEEYKKETEGAEINISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNIRTKKSDFLAILALKPGMDLTGTDIPTPGVSTPAPARDESQEALIIPTGRGEACDRPPVAT |
||||||||||
| Function | Polyprotein P3 [UniProtKB/Swiss-Prot:P27502] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g07560 | LOC_Os08g07560.1 | Chr08 | 4248194 | 4252995 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACCTATCTAGGAGTTTGTTTAGAAGAATAGCAAGCAGAGACGATAAATCTTTAAGTTGTATTGATAAACAAAAAGGTAAAAATGAAGACATAGATGAGCTTGAAGATATTGCAGAAGTAGACAAACAGCTCGAAAGATATCAAAGAGATACTCTGAGGGCAATAAGACCTCAACAAATATATTGCATGGGATTTTTTGAGAATAAAAATGGGTTATACAGAATATCTAGAGAAGTAGAGTTAAGCGTTTTAACAAAGCCAGTTGAGTTAAAAATTGTAGCCAAGGAATTTGAAAATGGATTAAAGTATTCAGGAACCACAGATGACTTAGAAACAGAAGCATCTGATAGAAATATAATAGATAATAGAAGACATAGTGTTTCAGAGTTTATGGAAAAATTAGATCAAGAAAGTGAGATAAAATATTACGAAAATAAATTAAAGGAAATAAATGAAGAATATAATAACTCTATGAAGTGTGAGTGGCCTAAAATAAGAGATAAAGAACTTTATTTCTATAGAGAATTAGCTAGAGTAAAGAAAGTAAAGAAGAACGAAGATATGGCAGTAGAAATTTTTAAAAACCAAGAAACCAAGATAGAACAGATAAAGAGGAAAGAGCAAGATAAGCATGGCAAAGAAGAGCAAAATCTTTGTAAAATTTTAAGTGAAGAAGAGCAATGGGCAAAGAATGAAAGATTATTTCTTGAAAGTTATGAAGAAGAAATTAATCTAATAAATGAGATGGAGAACATAGAAAATGAAATAGACAATGCAGAACAATATAATGATTTTATAAACACATTAGATGAAGTAGGGTTACATAATCTTGATAATGCAATGGAAGCTATGGAAGTGGACTTAGGAACAGGAAAGAGAAAAAGATATGGAGAAGGTACTGTGAAAAACGAAGGAGAAAGAGAAAGACCAGCTAGGGCAGCAGGAAAATGGCCCCCTTATAGAGAAGAATTTTCATATAACTATATACCAGGTCAATATAGGCATATGGGTACAAAGAGAAGAGACTTTGAGAAGCCTGTTAAATTTCAAAACCAGAGGAGTGATGGTGCTATATTAAATTTAGCCGCACATGACCCTATTGATTGGCCTAATATTATTAGTATTTGGAAAGGTTTAATAGTTCAAAAATATATACAAAACCAGCACAATATAGGAAGTAAAGTTGAAGATATGATAACTTACTTAGAAACATTTTTGATAACTTACTTAGAAACATTTTTAGGTGAATCTGCTAAGGTTCTATGGGAACAATGGGTTGAAAAGAATCCTACTAATTATGAAGAATTGAAAAGAGCTGGTAGCAATCCGCATAATTTTGCAAATGTTATATCTAACATTATTATAGCTGAAGATCCGGAATTAGGTTATACAACTTTGCAAAATGAAAGGTTAAAAGAAATAGAAAAATTAACGTTAACAAGTTGGAAAGGCATAAAAGAATTCTCCCAACATTATTTATATAATGCTACAACTGCTAAACAAGGATATAACAGGGGTATAGTTGAACGTTATTTCAATAAATTACCTGACCCACTAGGAAGTATGATATTTGAAGAATATAAAAAGGAAACTGAAGGAGCTGAAATCAACATCTCTCAAGCCATAACTTTTGTGTTTAAGCAACTAAGAAAAATATGCACGGGTATCCAAGCCCAAAGATCTATGAAACACTCGGATTACAATTTCTGCAATAAAATAGTTCAAATACCCTTATCATATGGAGAAGACAAGCCTAGAAGTAAAAGGATTTATAAACATCAAAATAGAAACCATAATAATATTAGAACAAAGAAAAGCGACTTCCTTGCCATACTTGCGCTGAAGCCTGGAATGGATCTGACCGGGACTGACATACCAACTCCAGGAGTTAGCACGCCGGCTCCGGCTAGGGACGAGAGCCAGGAAGCTCTCATCATTCCGACGGGACGGGGCGAGGCGTGTGACAGGCCTCCTGTTGCCACCTAA
More
|
|||||||
| Protein seq | MDLSRSLFRRIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTLRAIRPQQIYCMGFFENKNGLYRISREVELSVLTKPVELKIVAKEFENGLKYSGTTDDLETEASDRNIIDNRRHSVSEFMEKLDQESEIKYYENKLKEINEEYNNSMKCEWPKIRDKELYFYRELARVKKVKKNEDMAVEIFKNQETKIEQIKRKEQDKHGKEEQNLCKILSEEEQWAKNERLFLESYEEEINLINEMENIENEIDNAEQYNDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEGTVKNEGERERPARAAGKWPPYREEFSYNYIPGQYRHMGTKRRDFEKPVKFQNQRSDGAILNLAAHDPIDWPNIISIWKGLIVQKYIQNQHNIGSKVEDMITYLETFLITYLETFLGESAKVLWEQWVEKNPTNYEELKRAGSNPHNFANVISNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKGIKEFSQHYLYNATTAKQGYNRGIVERYFNKLPDPLGSMIFEEYKKETEGAEINISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNIRTKKSDFLAILALKPGMDLTGTDIPTPGVSTPAPARDESQEALIIPTGRGEACDRPPVAT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g18730 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0063700 | RBH | 0.0242345 | 0 | 0.0155985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0069300 | RBH | 0.01636 | 0.032199 | 0.0449665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
