Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g05270 | OGI:08007200 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:2750989-2753665 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATCCCCTCTTCTCTCCCTTCTTCCTCCCCCTTTCCTCTCCTCTTCTCTCCTCTCGTGTTGCCGATGAGCAGGCATGATTGCGCCGGCGAGGGTCGGGTTCTGGCAGGCGCATCGCGGCGGCGGCGTCGGCAGGAGGGACGACCTGAGTGCAGCCGGGCTCGGTCGGTTCCTCGGCTACGCCTCGGCTCTGTGTACAGGGAGGGCCATCGCCGAAAAAACCCACCACCACCGGCGGCGCCAGTATGGCGCCCATCTGAGACGCCTGCGACATCCACCCCAGCGCCGTGTTCCGCACCGCCGTCGGGAACAGCTCCGCCGTGTAGATGAACAACAGGTTGTACGTCGCCGCCATGCCGAAGATCCCTACCACCCCGCACGCCAGCCTCGCCACCCTGAACAATCGATCAGCGTTCGTTAGATCATCAAATGTTATGCTCGCGTAGACGCGTAGTAATGATCGAGCTAGCTAATTTTGATTTGATGATCGGACATTAATTACCTCATGTCGCCGGCGCCGGCGATGAGGTTGCCGGCGGAGCAGGAGATGCCGCTGAGAAGCATCATGCCGATAGCGAGCGGCTTCCGGCCGAAGCGGTCGAGGAGCAGCGCGGTGAGCAGGTAGGCGGGCATCTCGGCGAGCGAGTTCACAGGACGCTGACGTAGAGGTTGTTCTTGAGGTTGACGACGTTGGGGCTGAGACAGTACACCACCGAGGGCGAGCAGGTTGATCGCCACTGAGAGCACCAGCCTGAACCGTGCGCACTCACCGCCGGCCTCCCCCCTCGACGGCGGGAAGCGAAGCTAGGAGCGCGGACGCGGCTCCGTCGTTGCCATTGGCGGTAGCGCGTCACCGCGGTTCCGTCGTCGACGCCGCCGCCAAGAGGCCCCGTGGTCCGACGCCGTCCTTGTCCTCTCCCTTGCGCGAGTGAATCAGGAGGTCGTCGAGCTCGAGTCTGCGTTTGCCGGGAGCCGCCGCCGCGCTTCTCCCCTGCCGGCTGCCGCCCGCGCCTGCCGGGCCTGCTGCGCCCGCCGCGCCCACCAAGTGCGACCTTTCTCCCCATGTGCCGTCGTCCTTGCTCACCTCACCGCCGCCGGGGTCTCCGTCCTCGAGTTCGCCCGCGCGGCGACGCCCTTCCCTTCTCCCGCGACGCTGCCGCCGCCGCCGCCCTCCTCCTTCTCCCGCCTCCCGGGCCTCTTCAACCCCGAGGTCGCACTCACCTCCCCTTCTCCCGTGTCGTCGTTGCCGCCGCCGGTCGCTGCCTCCGCCTCGTTGCCAGCCGCCGACGTCCTCCTCCTCGCCTCGTTGGCGGTCGGCTTCCTTCCTACCCGCTTGCCGGCCTTGCGCAGAGAAGAGTGAGAGAAAGGAGGAAGGGAGAGGGGGGGGAAGAGGGAGGGTGATGATGTGGCATCTTGATATGTGGGGCTCACGTGGGTCCCACGCTTACTCAGCTGTCGCGTTGAATAAAACCGTAGTCAAAACTACCTAATGAGTTAAAGTGAACGGTTTTATAAATTGAGGGATGTGAAATATCTGGTTTTACGTTTAGAGGATGAATTTGTAACTCGATGACAAGTTGAGGGACCTTCGGGGTACTTTTTCCTTTTAAAAAAGGAAATTATATTGACAAGAAATGTTGGACTTTATTTACATAATTACATTTTTTATTACAAGAAAGATACACACCCATAAATCACTGTTAAGTGTAGTAGTATGTCAAGGGTATTAGAGTACTTTCCCCTCTCTTGTGTTCCCCTCTCTCGTGTACATATATGCCATTTAGGACCAAAATCAATACAAGGTTGAAATCCCTAATTTCTATCCCCTCTCTGAAATTAACATGGTATCAGAGCAAGAGATCCTAAAACCCTAGCCACCAAATCCGGTCATCGCAGGCGCGCCGGCGGCGCTCGCCGCCGGCGAGCCATCGTCTCATCCTCCCGTCATTAGTTGGCTGTCTTCGAGTTGTAGCAGTTTTGCTTTTTGTCTCTTCTCTTCGCATCAAAGCAGCAGCAACAATCGCCTCCTCCTGCTGCCGCCGGCCTAGCCACCGGCTACCTCGTCCATCCGTCGTCCTCCGCGACCGATCCCGTTGCAGATCTCGCGGCCGGTGGCGGTCGTCGTCGTCGTCGTCGTCCGTTGTCATATGTCGCATCAAGTCATCATGTTGTGGCTGCCGCTCGTTGCGTCCCCTTCCTCGTCGTCCCGTCCTCAAGCCTGTCAAGCAGCAGTCCGGAGCATCGTCCTTCCTCATCCCCACGCATCAGTGCGCGCTGCCAGAGGCAACCCCGTCCAAGCCGTTAGCCCTGTCGTCCCCGCCGCGGCTCGTCGTCAATCGCGAAGCCGTCCTCACCAGCTGTCGTGGTCGTCGTCCTCGCTCCAAGTCGCAGCGCTCGTCAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCAGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAACCGTGCAGGCGGAAACACCAGTCGGTGGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAATAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCAT
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| CDS seq | ATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTATTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCACCGACTGGTGTTTCCGCCTGCACGGTTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCTGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGACGAGCGCTGCGACTTGGAGCGAGGACGACGACCACGACAGCTGCTGAGTAAGCGTGGGACCCACGTGAGCCCCACATATCAAGATGCCACATCATCACCCTCCCTCTTCCCCCCCCTCTCCCTTCCTCCTTTCTCTCACTCTTCTCTGCGCAAGGCCGGCAAGCGGGTAGGAAGGAAGCCGACCGCCAACGAGGCGAGGAGGAGGACGTCGGCGGCTGGCAACGAGGCGGAGGCAGCGACCGGCGGCGGCAACGACGACACGGGAGAAGGGGAGGTGAGTGCGACCTCGGGGTTGAAGAGGCCCGGGAGGCGGGAGAAGGAGGAGGGCGGCGGCGGCGGCAGCGTCGCGGGAGAAGGGAAGGGCGTCGCCGCGCGGGCGAACTCGAGGACGGAGACCCCGGCGGCGGTGAGGGGGGAGGCCGGCGGTGAGTGCGCACGGTTCAGGCTGGTGCTCTCAGTGGCGATCAACCTGCTCGCCCTCGGTGGTGTACTGTCTCAGCCCCAACGTCGTCAACCTCAAGAACAACCTCTACGTCAGCGTCCTGTGAACTCGCTCGCCGAGATGCCCGCCTACCTGCTCACCGCGCTGCTCCTCGACCGCTTCGGCCGGAAGCCGCTCGCTATCGGCATGATGCTTCTCAGCGGCATCTCCTGCTCCGCCGGCAACCTCATCGCCGGCGCCGGCGACATGAGGGTGGCGAGGCTGGCGTGCGGGGTGGTAGGGATCTTCGGCATGGCGGCGACGTACAACCTGTTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTGCGGAACACGGCGCTGGGGTGGATGTCGCAGGCGTCTCAGATGGGCGCCATACTGGCGCCGCCGGTGGTGGTGGGTTTTTTCGGCGATGGCCCTCCCTGTACACAGAGCCGAGGCGTAGCCGAGGAACCGACCGAGCCCGGCTGCACTCAGGTCGTCCCTCCTGCCGACGCCGCCGCCGCGATGCGCCTGCCAGAACCCGACCCTCGCCGGCGCAATCATGCCTGCTCATCGGCAACACGAGAGGAGAGAAGAGGAGAGGAAAGGGGGAGGAAGAAGGGAGAGAAGAGGGGATAG
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| Protein seq | MPPLLGVYVFTDRLAFAAADWCFRLHGWPIMPPLLGVYVFTDRLAFAATDWCFRLHGWPLCRRCWASTSSPTGLPSPLPTGVSACTAGLYAAVDERCDLERGRRPRQLLSKRGTHVSPTYQDATSSPSLFPPLSLPPFSHSSLRKAGKRVGRKPTANEARRRTSAAGNEAEAATGGGNDDTGEGEVSATSGLKRPGRREKEEGGGGGSVAGEGKGVAARANSRTETPAAVRGEAGGECARFRLVLSVAINLLALGGVLSQPQRRQPQEQPLRQRPVNSLAEMPAYLLTALLLDRFGRKPLAIGMMLLSGISCSAGNLIAGAGDMRVARLACGVVGIFGMAATYNLLFIYTAELFPTAVRNTALGWMSQASQMGAILAPPVVVGFFGDGPPCTQSRGVAEEPTEPGCTQVVPPADAAAAMRLPEPDPRRRNHACSSATREERRGEERGRKKGEKRG |
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| Function | Organic cation/carnitine transporter 4 [UniProtKB/Swiss-Prot:Q9LHQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g05270 | LOC_Os08g05270.1 | Chr08 | 2750989 | 2753665 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTATTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCCACCGACTGGTGTTTCCGCCTGCACGGTTGGCCTTTATGCCGCCGTTGTTGGGCGTCTACGTCTTCACCGACCGGCTTGCCTTCGCCGCTGCCGACTGGTGTTTCCGCCTGCACGGCTGGCCTTTATGCCGCCGTTGACGAGCGCTGCGACTTGGAGCGAGGACGACGACCACGACAGCTGCTGAGTAAGCGTGGGACCCACGTGAGCCCCACATATCAAGATGCCACATCATCACCCTCCCTCTTCCCCCCCCTCTCCCTTCCTCCTTTCTCTCACTCTTCTCTGCGCAAGGCCGGCAAGCGGGTAGGAAGGAAGCCGACCGCCAACGAGGCGAGGAGGAGGACGTCGGCGGCTGGCAACGAGGCGGAGGCAGCGACCGGCGGCGGCAACGACGACACGGGAGAAGGGGAGGTGAGTGCGACCTCGGGGTTGAAGAGGCCCGGGAGGCGGGAGAAGGAGGAGGGCGGCGGCGGCGGCAGCGTCGCGGGAGAAGGGAAGGGCGTCGCCGCGCGGGCGAACTCGAGGACGGAGACCCCGGCGGCGGTGAGGGGGGAGGCCGGCGGTGAGTGCGCACGGTTCAGGCTGGTGCTCTCAGTGGCGATCAACCTGCTCGCCCTCGGTGGTGTACTGTCTCAGCCCCAACGTCGTCAACCTCAAGAACAACCTCTACGTCAGCGTCCTGTGAACTCGCTCGCCGAGATGCCCGCCTACCTGCTCACCGCGCTGCTCCTCGACCGCTTCGGCCGGAAGCCGCTCGCTATCGGCATGATGCTTCTCAGCGGCATCTCCTGCTCCGCCGGCAACCTCATCGCCGGCGCCGGCGACATGAGGGTGGCGAGGCTGGCGTGCGGGGTGGTAGGGATCTTCGGCATGGCGGCGACGTACAACCTGTTGTTCATCTACACGGCGGAGCTGTTCCCGACGGCGGTGCGGAACACGGCGCTGGGGTGGATGTCGCAGGCGTCTCAGATGGGCGCCATACTGGCGCCGCCGGTGGTGGTGGGTTTTTTCGGCGATGGCCCTCCCTGTACACAGAGCCGAGGCGTAGCCGAGGAACCGACCGAGCCCGGCTGCACTCAGGTCGTCCCTCCTGCCGACGCCGCCGCCGCGATGCGCCTGCCAGAACCCGACCCTCGCCGGCGCAATCATGCCTGCTCATCGGCAACACGAGAGGAGAGAAGAGGAGAGGAAAGGGGGAGGAAGAAGGGAGAGAAGAGGGGATAG
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| Protein seq | MPPLLGVYVFTDRLAFAAADWCFRLHGWPIMPPLLGVYVFTDRLAFAATDWCFRLHGWPLCRRCWASTSSPTGLPSPLPTGVSACTAGLYAAVDERCDLERGRRPRQLLSKRGTHVSPTYQDATSSPSLFPPLSLPPFSHSSLRKAGKRVGRKPTANEARRRTSAAGNEAEAATGGGNDDTGEGEVSATSGLKRPGRREKEEGGGGGSVAGEGKGVAARANSRTETPAAVRGEAGGECARFRLVLSVAINLLALGGVLSQPQRRQPQEQPLRQRPVNSLAEMPAYLLTALLLDRFGRKPLAIGMMLLSGISCSAGNLIAGAGDMRVARLACGVVGIFGMAATYNLLFIYTAELFPTAVRNTALGWMSQASQMGAILAPPVVVGFFGDGPPCTQSRGVAEEPTEPGCTQVVPPADAAAAMRLPEPDPRRRNHACSSATREERRGEERGRKKGEKRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g28960 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003100 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003140 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002930 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0041800 | RBH | 4.4232855 | 1.880602 | 1.194004 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002810 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0046800 | RBH | 4.7404565 | 1.3583395 | 3.0791315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
