Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g05030 | OGI:08006770 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:2576587-2581747 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCAAATTTTGTGTCATATATAGAGCTATTGCTAGTAGCTTGTCAACATATAGGTTTAGAAGACTGCCATTTCATTAAACAAGGATTGCACATTCTTCGATAATGTCACATATCCTCCATGGTCAGTCATATTACTAGGTGACAATGCAGCACCTTTTTAAGTCACCCTCAATCAACCTACATTCCAAAACATTAATTTGTCAGTTCCACAAAATATTTTTTTGATCCCCAATAAGTAAATGCCTTGCAATATCCAAATCAAATAGTTCTTAGATTGAGTCATCCAGCTAGCTATGCCAAAAATAAATGCATACAAATTAAATGGTTGTTTGATTATCTGCTTAGATATCACATTATTATACTCTGAATTATAGATCTAGCTCCATCTGCTGATAATAAAACTAATAATGTTTACAACTATATAAAGCCATACCACAAAACTTACCAGGCATGCATAACTTTCGTGTGCCTATGATGCAACTAATTAACCACACGGGTTGAGGATAAAAATTGGGAATAAAAAATAGCAAGGCAAGGGATTATACTACAATAGCTCAAGTACTTACCCACTTAGAAGCATCAGAGAATTGTACAGGGAAAGTAATGTTTTCCCTAAATGAGTCAACAAGATTATGAACTTCAACCTGCATAGAAAAAAACAAAATAGGAGTTCAACCTTTTTTTCTTTTACGTTTCAATCTACCCTATAGTTCAACAAATGGTTTTACTCATTCACTCATTCACTCATTCTTTCATTCCTCACTCAACGGTCGAGATCATCCCGGTGAAATCCCAATGGTCCAGATCGCTCCCACCTCCCACCTCCCACCTCCCTCGCGGTCCAGATCGATCGATCCCTCGATTGCATGCTCCTCTCCGCTCCGTCTCAAACGCTCTCACGCGCCGCCGCCCCTCCCCTCCCCAACCCTAATCGCTCCCTTTCACGCCGTCGTCGCTGCCGCCCTCGACTGCCGCCGATCCCCGTCGTCGCATCAATCCTCTCGCCGCCACCGATCCCCGCCGCCGGCTCGCCCTCAACCCGATCCCCATCGCCGTCGTCGCATCCGTCGTCGTCCAGGATTCCCGTCGATGCGATCTGCTCCTTGCCGCCACCGATCCCCGACGTGCCTCTACCCTATCATACCCCTGGCCACAGACCATACTCAAGAGCAGGCGACATGCGCGGCGAGACCACGGTGGACGAAGCCGGGTGGTGCTCACCGAGGGGCTCGGCAGAGGCGGCGCGTCCACGCCGGGCTGCGACGGAGCGGAGTTGATGACGGCGTGGTGGCCGGCGTAATGATTGGATTGGAGCACCACATCTTCTCGGCCGTCTCGCCCCTGACCTCTATTTGCAACGCCGTGCCCTGTGCCCCTGTCTACCCACGCCATTTCCAACCTCGACAGCGGCCATCGCGCCCGCACTGGCCTGGGTGAGACACCCATACCAGCAGGCCACAAGCAATGAGGTACCTCTTGGTCTTGATATGCACATGCGCAATGTGATGGAAGTATCTGGTGGATGAATATATCTTGTTTACTTGAATCATTCACACTTGTTTATGGTTCATGCTCACTTTCTTCTCTCTCTCTAATTCGGTTTGATGGTAGCGTCTTCTCCCTTGATGCTTCCAGATTAGGACTGTTGAAGAGATTGTATACAACCAGATTAGGAGTGTTGAAGAGATTGGATACATGTCCAGAGGACAAATATAGGAGTGAGGAGTCATCATTTTTATATGGATCATATTTCTGAATTGATGAATTGATATGAGCACTTGCATAATCTGGTTTTAGAATGTTAAAACAGTTTTTATTCAACAAAAACAGATTTATTTGAGCTCATTCTCTTCAAGTTTGTTTGCACATGTAAATGAAATTAATTATGGTGGGATTGTTAAATCTCTTTGGCATACACACTTTATTTATTGATTTAACTGTAACCACATGCAACGACAGAAAAAGTTAATAATGAAGGATACAAATTTTTTAGGCAATCGATGCTTTGGTCCATAATCTGGGCAAACATGCTCATGGTCCCATAAGATCATATTAACCAATCGACACGGTTTTACATTTTGTCTATTCGAGTTTGATTCCAGGCTAGCTACTGTGATTTTGGGGTGTATGGAATGAGATGTATTGTGTCATCCCTTTTCTTTCAATATCAACATAATTCAAATTTACATGATCAATGAACTATTCATTAACTGTATTTTTCCTCTACAGGAAATCCAACGATACTGAAGCTTTTTTAAGAGGAATTTTATAGTACTTGAGAAGGCACCAAGTACCAAATCTCAGCTGTTGATTTCTTAAGATCCTATGGAATGTGTCATATTGAAATTATGTATTATGAATTATTTTTGAAATGTTGCAGCAAGATCAGCCTCTAAAATATGATCATATGATTGCAATCAGATAGTGATGAGCACATCAGTCAAGACATGAAGAAGATCATGAGATAAATTTGCCTGTTAAGAGAGCCTAAGTGGTAAAGCTCATTCAACCAAAGATGCGGCAAACATGGATGATGTTTTTTTAGGTTGATTTCAATAACTACATGCTGAAGTGCAAATCCGTATATGTGTCCTATAATCATATTCTTAAATGAGGAGATGGTCAGGGTACATTTTAAAGCAAAGGTGAGTAGAAGCTGAAAGTTAATTTCCCCTCCTTTGATGTTTGAGGGAGAAGATCCCTGTTGATGCATAAAATGGATGCATCAGAAGAAAAACGATGGTTGTTGTCTGGTGAAAAAGACCTCACATGCCTTAATTTTGGTTTGTTTCTTGTACAGACATGCTCAAGCGAAGAAAATATATGGTGTTGGAGGAAGAGCAAGATACGCGCTGAACGACATGATCGAACTGTAGCTCTTGCTCAGGTGTTCATCCTAATCCTTTTATATTTTTTATTTCTCATGTGCAAAATATTTTCTTAGATGAAATTGCTACTCCTTATGGCATTTAAATCTGATCATAGTTGCTAAATGTTTCAGCGAGTACAAAAGCCTAAGAAGGATTCGAGCAGGCAGCGCCAAACTTCTGAGATCAAACATGCTGAGAAATGTGAAAAAACAACACCCACAAACTTCTGACAAGAACAGACGAAAATTTGAAAGTGAAGTGGTTGTTGTGGAAATTTTAGTACTTACAAGTTCCCCCTAATGCTTGATTGCCATATGCGAACTTCTATAGGTGAAATCATATGGTGTCTCAAGCCATTGATGTTTTCCCTTTTTGCCGATGTGTTGTAAAGTGGCAGGGTTATGTAATTCTATAGGTTAGGTTAAAATTGACATCTCATTACTGTAATGCTGCAATTTCAGTGAGTGGAATATCAATTATTTGGGTTATTTAGAAAGATAAATACAGCTGATGGGTACACGATGTGATTTTGTATAAAGACAATTTGTTTCTTTCTCCTTTTGTCATAATGGTTAAAATTCATATTTGCGTATGTGCACATGCATCTTCTTGGTTACCGTAGCGTTAGCACGGGCATGCTACTAGTATTACAGAAACAAACAACATATTTTTTTGTTTTAGCACATATAGCTTTTAACATACCTTGAGATCTACTGTCAAACTTTTCCCCTGCAGGTATCCCCAGCCAAGAGAAAGAAGGTAGTCTTCTAACTGTTCACAAAATATAATTACATATAAACAATACTGTATTTGTAGTAAATTGATCAATAAAGACTAGACTTTTTATCACCTGAGGTAAAGTAGAACAACAACTATCCTGAAAAACAATCACATCCCCTCGTCTAATACCAAGCCTCTCCGCAATAGAATCAACTTTCACCTATGAAACCAAAAGAGTCAAATACTACGAGAAAAATATCTGGACAGAATAATGTTATACCAGATTCACAATGAAACCGCTGGTGATATTGTTGTCAAGACAGAGTTCCTCCAGTTTAGAGACATCCAGTAGTTCCACCGCCTTCAATTGCATGCCAAGTATGGGGCGAGCAACACGGCTAAAAATGAGTTGGATTTAGTGCATCAGTACCAGAAGATAAACTACACAATATTTGTTTGACTAATCCATGTACAACTGCTCCATAAGAAAACAGTACCACACCATCCTGGATTAAAAGACACATTGCTATAAGGATGTATTTTGTCTGTTCCATACTCCTACCAGCAATTCTTTTTTTTTTCAGTGTAGGAATGGGGTAATTGCCTCCATACCATCAAATTTGTTGCATCTTGTAAATATATATACCACCCAATCCTCCCTTTATCCATAATACCATTCACTATGAACTAACAGGTTAAAAAATGAATCAATCACCCATGATGGCTAGAACACAAAGTAATTAAGAGAGACATGCTCCTAGCAGTCAAAGATTGCTAGCATTCAAACAACATCAAAATCACATAATTGATACACTCTTGTGCCGTGAGCATTCCACCATGCTAGACATACTCTGCCACAACCATTCCTGTATTTCATAATTCATGCCCGCAAGACATTGCAATGACCAATGAGCAAGCAGGATCACGCTCAAATGATTGCCATGATGAGCTTTACTAGAGAGACCAGAAACATCATCAAACATTTTCTAGTGCTCGAAATAGTGCAACTTAACTGATGGGATGTTGACAGAGCGGCAAAAGGTGAAAATGTGTTGTTAACAATAATAACTGCCCATGAAATTTTTATTTAGATGACAACAGAAAAAAAAAAAGGAAAACAAACCTAAACTGATGCCACATCTCAACGCAAGTTCTGATTGTAGTGATAGAGGTTACTACCGGACCCGGGTTATTGTCAAATACAATCCCAATGATATTACCATCATGGTCAATCACTGGCCCTCCTGAACCACCCTGCATTAGAGAGATACCATAAAATTAAATGGGAAAATAACAATGCCATAAAATTAAATGGGAAAAATAACAATGCATTAAAATGATAACATAATAATGCATCAATACCTCAGGAATATCACAACTCAGAAACATATAGTGGTTGTTCAATAACATGGGACATTCCAGCCATGAGATTTTTCCATGCCTAACCATTAAGCACATGTTTTCATCCCTAGCCAATGCAAATACGTCCTGACCATAGGTTGTACTCGAGCCAAAAGAAGGGACCTGCAACTGGAAGTCTCCCATGACCTCTAAAAGAGCAACATCATAGT
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| CDS seq | ATGGGAGACTTCCAGTTGCAGGTCCCTTCTTTTGGCTCGAGTACAACCTATGGTCAGGACGTATTTGCATTGGCTAGGGATGAAAACATGTGCTTAATGGTTAGGCATGGAAAAATCTCATGGCTGGAATGTCCCATGTTATTGAACAACCACTATATGTTTCTGAGTTGTGATATTCCTGAGGGTGGTTCAGGAGGGCCAGTGATTGACCATGATGGTAATATCATTGGGATTGTATTTGACAATAACCCGGGTCCGGTAGTAACCTCTATCACTACAATCAGAACTTGCGTTGAGATGTGGCATCAGTTTAGCCGTGTTGCTCGCCCCATACTTGGCATGCAATTGAAGGCGGTGGAACTACTGGATGTCTCTAAACTGGAGGAACTCTGTCTTGACAACAATATCACCAGCGGTTTCATTGTGAATCTGGTGAAAGTTGATTCTATTGCGGAGAGGCTTGGTATTAGACGAGGGGATGTGATTGTTTTTCAGGATAGTTGTTGTTCTACTTTACCTCAGTTAGAAGACTACCTTCTTTCTCTTGGCTGGGGATACCTGCAGGGGAAAAGTTTGACAGTAGATCTCAAGGTTGAAGTTCATAATCTTGTTGACTCATTTAGGGAAAACATTACTTTCCCTGTACAATTCTCTGATGCTTCTAAGTGGGTTGATTGA
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| Protein seq | MGDFQLQVPSFGSSTTYGQDVFALARDENMCLMVRHGKISWLECPMLLNNHYMFLSCDIPEGGSGGPVIDHDGNIIGIVFDNNPGPVVTSITTIRTCVEMWHQFSRVARPILGMQLKAVELLDVSKLEELCLDNNITSGFIVNLVKVDSIAERLGIRRGDVIVFQDSCCSTLPQLEDYLLSLGWGYLQGKSLTVDLKVEVHNLVDSFRENITFPVQFSDASKWVD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g05030 | LOC_Os08g05030.1 | Chr08 | 2576587 | 2581747 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGAGACTTCCAGTTGCAGGTCCCTTCTTTTGGCTCGAGTACAACCTATGGTCAGGACGTATTTGCATTGGCTAGGGATGAAAACATGTGCTTAATGGTTAGGCATGGAAAAATCTCATGGCTGGAATGTCCCATGTTATTGAACAACCACTATATGTTTCTGAGTTGTGATATTCCTGAGGGTGGTTCAGGAGGGCCAGTGATTGACCATGATGGTAATATCATTGGGATTGTATTTGACAATAACCCGGGTCCGGTAGTAACCTCTATCACTACAATCAGAACTTGCGTTGAGATGTGGCATCAGTTTAGCCGTGTTGCTCGCCCCATACTTGGCATGCAATTGAAGGCGGTGGAACTACTGGATGTCTCTAAACTGGAGGAACTCTGTCTTGACAACAATATCACCAGCGGTTTCATTGTGAATCTGGTGAAAGTTGATTCTATTGCGGAGAGGCTTGGTATTAGACGAGGGGATGTGATTGTTTTTCAGGATAGTTGTTGTTCTACTTTACCTCAGTTAGAAGACTACCTTCTTTCTCTTGGCTGGGGATACCTGCAGGGGAAAAGTTTGACAGTAGATCTCAAGGTTGAAGTTCATAATCTTGTTGACTCATTTAGGGAAAACATTACTTTCCCTGTACAATTCTCTGATGCTTCTAAGTGGGTTGATTGA
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| Protein seq | MGDFQLQVPSFGSSTTYGQDVFALARDENMCLMVRHGKISWLECPMLLNNHYMFLSCDIPEGGSGGPVIDHDGNIIGIVFDNNPGPVVTSITTIRTCVEMWHQFSRVARPILGMQLKAVELLDVSKLEELCLDNNITSGFIVNLVKVDSIAERLGIRRGDVIVFQDSCCSTLPQLEDYLLSLGWGYLQGKSLTVDLKVEVHNLVDSFRENITFPVQFSDASKWVD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g05030 | LOC_Os08g05030.2 | Chr08 | 2576587 | 2581747 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGAGACTTCCAGTTGCAGGTCCCTTCTTTTGGCTCGAGTACAACCTATGGTCAGGACGTATTTGCATTGGCTAGGGATGAAAACATGTGCTTAATGGTTAGGCATGGAAAAATCTCATGGCTGGAATGTCCCATGTTATTGAACAACCACTATATGTTTCTGAGTTGTGATATTCCTGAGGGTGGTTCAGGAGGGCCAGTGATTGACCATGATGGTAATATCATTGGGATTGTATTTGACAATAACCCGGGTCCGGTAGTAACCTCTATCACTACAATCAGAACTTGCGTTGAGATGTGGCATCAGTTTAGCCGTGTTGCTCGCCCCATACTTGGCATGCAATTGAAGGCGGTGGAACTACTGGATGTCTCTAAACTGGAGGAACTCTGTCTTGACAACAATATCACCAGCGGTTTCATTGTGAATCTGGTGAAAGTTGATTCTATTGCGGAGAGGCTTGGTATTAGACGAGGGGATGTGATTGTTTTTCAGGATAGTTGTTGTTCTACTTTACCTCAGTTAGAAGACTACCTTCTTTCTCTTGGCTGGGGATACCTGCAGGGGAAAAGTTTGACAGTAGATCTCAAGTCCTAA
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| Protein seq | MGDFQLQVPSFGSSTTYGQDVFALARDENMCLMVRHGKISWLECPMLLNNHYMFLSCDIPEGGSGGPVIDHDGNIIGIVFDNNPGPVVTSITTIRTCVEMWHQFSRVARPILGMQLKAVELLDVSKLEELCLDNNITSGFIVNLVKVDSIAERLGIRRGDVIVFQDSCCSTLPQLEDYLLSLGWGYLQGKSLTVDLKS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g05030 | LOC_Os08g05030.3 | Chr08 | 2576587 | 2581747 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGAGACTTCCAGTTGCAGGTCCCTTCTTTTGGCTCGAGTACAACCTATGGTCAGGACGTATTTGCATTGGCTAGGGATGAAAACATGTGCTTAATGGTTAGGCATGGAAAAATCTCATGGCTGGAATGTCCCATGTTATTGAACAACCACTATATGTTTCTGAGTTGTGATATTCCTGAGGGTGGTTCAGGAGGGCCAGTGATTGACCATGATGGTAATATCATTGGGATTGTATTTGACAATAACCCGGGTCCGGTAGTAACCTCTATCACTACAATCAGAACTTGCGTTGAGATGTGGCATCAGTTTAGCCGTGTTGCTCGCCCCATACTTGGCATGCAATTGAAGGCGGTGGAACTACTGGATGTCTCTAAACTGGAGGAACTCTGTCTTGACAACAATATCACCAGCGGTTTCATTGTGAATCTGGTATAA
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| Protein seq | MGDFQLQVPSFGSSTTYGQDVFALARDENMCLMVRHGKISWLECPMLLNNHYMFLSCDIPEGGSGGPVIDHDGNIIGIVFDNNPGPVVTSITTIRTCVEMWHQFSRVARPILGMQLKAVELLDVSKLEELCLDNNITSGFIVNLV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.728493 | 0.877532 | 2.162026 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0145600 | RBH | 2.198304 | 1.216171 | 4.075380 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05340 | RBH | 0.0 | 0.0 | 0.073644 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0145600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003060 | RBH | 0.609935 | 11.712744 | 9.133938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003150 | RBH | 0.332956 | 2.596116 | 2.813735 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003110 | RBH | 1.254319 | 17.159082 | 12.807754 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003100 | RBH | 0.178136 | 0.267033 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002890 | RBH | 8.504851 | 3.596879 | 19.231308 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0039000 | RBH | 9.0634455 | 23.5459195 | 22.302199 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002770 | RBH | 0.285754 | 0.575546 | 1.477814 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0043800 | RBH | 8.679682 | 17.6726005 | 33.886141 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002910 | SBH | 1.330068 | 14.809369 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002860 | SBH | 2.839147 | 5.154099 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002940 | RBH | 0.912905 | 1.211343 | 1.179557 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002860 | RBH | 0.596515 | 5.136265 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002870 | SBH | 0.479854 | 6.192564 | 2.351467 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002730 | SBH | 1.610551 | 7.524541 | 9.967426 |
