Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g49240 | OGI:07080250 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:29484521-29487438 | ||||||||
| Gene Symbol | RLCK242, OsRLCK242 | ||||||||||
| DNA seq | CTTTGGCCGCGTGCGTTCAACCTCTACCGCGTTTGCTCGCTCTCCTCTCAGATCCCAGCAACCATTCGCCACTTCAAGCTTTGCCTCCTCCTCCATCTCTGATTGGCTTCCCATGCCACCGCCGCCCTTTCTTGTTGCTTTTCCTTGATCGATCTGGTGCCTAATGGCGCTGCCTTTGCTTCGCCTGCTGCTGCTGCTTGTGCTATCATCGGTTCCTCTCTCTTGCCAGCTCGCCCACTCTACTGCTGCAGGTTAATTGGTGCCCTTTTATTTCTTTCGTTTGGCCCCTTGGCTAATTCGGTTGTGCTGCTGATTATCCTCATTGTTTCTTGGGTTGATTTTTGCAGACACACAGAATTGGGGACAGACCTCTGTTGTTCATCTTAGGTGAGAATGTATTTACAGACTTTCTTTTTTTCTGCTGGGCAACACTGGCAATCTATTCTGGCATTAATCTCTCTCTCTTTCGCTACTTCTTGATTTGGTCGGCCATTCCATGTGGAATTTGTTTGTACGAATTTACGATTTATTTATTTATTTATTTTCGATTATCGAGATCGATGCCTGTGATCTACTTCATTACGATTTAGACAGCTTAATTTTACCGTGAAGAGGAGGCATACTAAAAAAGGAATTTCCTTTCTTTTGCTCTTGCTTCTTGTGATTTCAACTTTCAGAAATGCACATACTAGAAAATTACTTGGCCTATTGGACGATATCAGTGGTAGAACTGGAAGCCTACATGCTCTTCTTCTCGAGGAGTCACCTAAACAAGCTCCTCCTCATCATCACAATAGGCACGGGGGGCATCACAGAGCAGCACATACACCAGCACCATCGCCTGCACCATCCCCTTCTCCATTCACTGCTCCACCTAAATCAGCCTCACCTGCTGCCATAACAATCCCCATATCTCCTTCAACCCCACAGCCAAAGGCAGAGAGTAATCCTGCTGTTGAAGATGCTCCGGCTCAACCTAGGCATTCCTGGAGAAACTACGGTTTGGTCACAGCAGGAAGTGCAGTTTTCCTTGTCATGACAATAGCATCTGTTATTTACTGTCGAGCTAAGAAAGTCGGAACTGTCAGACCTTGGGCCACGGGGTTAAGCGGGCAATTGCAACGAGCATTTGTCACAGGTACACGCTTCCTCTACATGTATATTTTGTGTGTCTTATATCTAGTATTTCAGTTACACCTTACACCATGACCCATCAATCTTTTATCCCAGGTGTACCTTCATTGAAACGGTCTGAGCTGGAAGCAGCATGTGAGGATTTCAGCAATATAATTGGTTCTACATCTAGTTGCATGTTGTACAAGGGAACTTTATCAAGTGGAGTTGAAATAGCAGTTTTGACAAGTTCAACAGAATCCGGGAAGGAATGGTCAAAAGAATGCGAGTCACAGTACAGAAAAAAGGTAACATGTGCTCATAACTTTTAGGATATCCCCTAAAATACAAATATGTTTTCTGTGGTGCAAATGACTTTTCTCAGAAATGTGCGTATGCTTTTTCTCATCTTTACTGTGCGAATGGCTGAAATGGTTATGATTTCAGATCACAAATTTATCCAAAGTTAGCCATAAGAACTTTATGAATCTGCTCGGCTATTGTGAAGAAGAGAATCTTTTTACCAGAGCTATGGTGTTTGAGTATGCTCCAAACGGGACACTTTTTGAGTATCTCCATGGTAAGCCTGCCCCTGTTTACTAATCTGTTCCTTTTATTCCATGTCATTTCTTTGATTTTCTGTGAACAGGGTAATTCCTGTATCACATATATCGCTTCAAATATTATACTGGTAAAATCTGCGAATTTCGCACACTACAGAATGCAACCCCGTATGATTATTGATATGGCATTTTGACAATGCCTTTGATTGTGTTGCTGCAGTCAGGGAAGCTGAGAACTTGGACTGGATGGCACGGGTTAGGATATCGATGGGAATAGCTTACTGTCTAGAGCACATGCATCAGCTGAACCCACCTGTTGTGCCAAGGAACTTCAACTCGACAACTATATACCTGACTGATGATTTCGCTGCAAAGGTTTCAGATCTTGATTTCTGGAACGACAGTAAGGGATCCTTCAATTCTGCTACTTCTGATGAAACCGTCATGGTGGAGATAGATAGCATGGTGCATCAATATGGCATAATACTGCTGGAGATATTGACCGGAAGAGTTCCCTACTCTGAGTCAGATGGGCCACTGGAGCATTGGGCATCTGGTTACTTTGAAGGCAAGATGACTCTTGCAGAGCTGATTGACCCAAGCCTGGGATCATTCCCTGAAGACGCTGCGCGTGCATTGTGCGATGTGGCGAGGTGGTGCATTGAGCCAGAGCCGAGCAAGAGGCCGCTCATGTCACAGGTTGCAGGTCGGATGAAGGAGATCACCTCCCTGGGGCCTGAGGGAGCGACTCCAAAGGTGTCGCCGCTATGGTGGGCGGAGCTGGAGATCATGTCTGGCCAAGCTACCTAGCTATGCTGATGTCAACACCACCAGCAACAGCAATTGATTCCCCAATGTGATATAGTAGCAAATTCTTTCATTTCTTTTCTTGTTTGTTAATCATCAAGACTACTCAAGAGTTTGGTGGTTGTGGTTATAGTTATATATGTATACATACAAGGTGTTTTGAGCATTGTAACTTGTAAGCATGCAAACGTGTGAAGGAAGGAAGGAAGGATGTATCATGTTGAGTTTGTTGGCAACATGTGGCAAGTAGCATGCATGATAGCACTGAATAATCCAGCTAAGGCCATGGCAACAAAACTAGTGATGAGAATACTCTGACTTTGAATGAGAAAATACTTCTGTGTCTCTTGGCAACTTGTTTCAGCTACTGGCCTTTTCCTAACTCGGTTGTTGCAAGATCAACAAATGTCAATAAAATGCTGGTGATATCCAATA
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| CDS seq | ATGGCGCTGCCTTTGCTTCGCCTGCTGCTGCTGCTTGTGCTATCATCGGTTCCTCTCTCTTGCCAGCTCGCCCACTCTACTGCTGCAGACACACAGAATTGGGGACAGACCTCTGTTGTTCATCTTAGAAATGCACATACTAGAAAATTACTTGGCCTATTGGACGATATCAGTGGTAGAACTGGAAGCCTACATGCTCTTCTTCTCGAGGAGTCACCTAAACAAGCTCCTCCTCATCATCACAATAGGCACGGGGGGCATCACAGAGCAGCACATACACCAGCACCATCGCCTGCACCATCCCCTTCTCCATTCACTGCTCCACCTAAATCAGCCTCACCTGCTGCCATAACAATCCCCATATCTCCTTCAACCCCACAGCCAAAGGCAGAGAGTAATCCTGCTGTTGAAGATGCTCCGGCTCAACCTAGGCATTCCTGGAGAAACTACGGTTTGGTCACAGCAGGAAGTGCAGTTTTCCTTGTCATGACAATAGCATCTGTTATTTACTGTCGAGCTAAGAAAGTCGGAACTGTCAGACCTTGGGCCACGGGGTTAAGCGGGCAATTGCAACGAGCATTTGTCACAGGTGTACCTTCATTGAAACGGTCTGAGCTGGAAGCAGCATGTGAGGATTTCAGCAATATAATTGGTTCTACATCTAGTTGCATGTTGTACAAGGGAACTTTATCAAGTGGAGTTGAAATAGCAGTTTTGACAAGTTCAACAGAATCCGGGAAGGAATGGTCAAAAGAATGCGAGTCACAGTACAGAAAAAAGATCACAAATTTATCCAAAGTTAGCCATAAGAACTTTATGAATCTGCTCGGCTATTGTGAAGAAGAGAATCTTTTTACCAGAGCTATGGTGTTTGAGTATGCTCCAAACGGGACACTTTTTGAGTATCTCCATGTCAGGGAAGCTGAGAACTTGGACTGGATGGCACGGGTTAGGATATCGATGGGAATAGCTTACTGTCTAGAGCACATGCATCAGCTGAACCCACCTGTTGTGCCAAGGAACTTCAACTCGACAACTATATACCTGACTGATGATTTCGCTGCAAAGGTTTCAGATCTTGATTTCTGGAACGACAGTAAGGGATCCTTCAATTCTGCTACTTCTGATGAAACCGTCATGGTGGAGATAGATAGCATGGTGCATCAATATGGCATAATACTGCTGGAGATATTGACCGGAAGAGTTCCCTACTCTGAGTCAGATGGGCCACTGGAGCATTGGGCATCTGGTTACTTTGAAGGCAAGATGACTCTTGCAGAGCTGATTGACCCAAGCCTGGGATCATTCCCTGAAGACGCTGCGCGTGCATTGTGCGATGTGGCGAGGTGGTGCATTGAGCCAGAGCCGAGCAAGAGGCCGCTCATGTCACAGGTTGCAGGTCGGATGAAGGAGATCACCTCCCTGGGGCCTGAGGGAGCGACTCCAAAGGTGTCGCCGCTATGGTGGGCGGAGCTGGAGATCATGTCTGGCCAAGCTACCTAG
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| Protein seq | MALPLLRLLLLLVLSSVPLSCQLAHSTAADTQNWGQTSVVHLRNAHTRKLLGLLDDISGRTGSLHALLLEESPKQAPPHHHNRHGGHHRAAHTPAPSPAPSPSPFTAPPKSASPAAITIPISPSTPQPKAESNPAVEDAPAQPRHSWRNYGLVTAGSAVFLVMTIASVIYCRAKKVGTVRPWATGLSGQLQRAFVTGVPSLKRSELEAACEDFSNIIGSTSSCMLYKGTLSSGVEIAVLTSSTESGKEWSKECESQYRKKITNLSKVSHKNFMNLLGYCEEENLFTRAMVFEYAPNGTLFEYLHVREAENLDWMARVRISMGIAYCLEHMHQLNPPVVPRNFNSTTIYLTDDFAAKVSDLDFWNDSKGSFNSATSDETVMVEIDSMVHQYGIILLEILTGRVPYSESDGPLEHWASGYFEGKMTLAELIDPSLGSFPEDAARALCDVARWCIEPEPSKRPLMSQVAGRMKEITSLGPEGATPKVSPLWWAELEIMSGQAT |
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| Function | Protein MALE DISCOVERER 2 [UniProtKB/Swiss-Prot:C0LGQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g49240 | LOC_Os07g49240.1 | Chr07 | 29484521 | 29487438 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCTGCCTTTGCTTCGCCTGCTGCTGCTGCTTGTGCTATCATCGGTTCCTCTCTCTTGCCAGCTCGCCCACTCTACTGCTGCAGACACACAGAATTGGGGACAGACCTCTGTTGTTCATCTTAGAAATGCACATACTAGAAAATTACTTGGCCTATTGGACGATATCAGTGGTAGAACTGGAAGCCTACATGCTCTTCTTCTCGAGGAGTCACCTAAACAAGCTCCTCCTCATCATCACAATAGGCACGGGGGGCATCACAGAGCAGCACATACACCAGCACCATCGCCTGCACCATCCCCTTCTCCATTCACTGCTCCACCTAAATCAGCCTCACCTGCTGCCATAACAATCCCCATATCTCCTTCAACCCCACAGCCAAAGGCAGAGAGTAATCCTGCTGTTGAAGATGCTCCGGCTCAACCTAGGCATTCCTGGAGAAACTACGGTTTGGTCACAGCAGGAAGTGCAGTTTTCCTTGTCATGACAATAGCATCTGTTATTTACTGTCGAGCTAAGAAAGTCGGAACTGTCAGACCTTGGGCCACGGGGTTAAGCGGGCAATTGCAACGAGCATTTGTCACAGGTGTACCTTCATTGAAACGGTCTGAGCTGGAAGCAGCATGTGAGGATTTCAGCAATATAATTGGTTCTACATCTAGTTGCATGTTGTACAAGGGAACTTTATCAAGTGGAGTTGAAATAGCAGTTTTGACAAGTTCAACAGAATCCGGGAAGGAATGGTCAAAAGAATGCGAGTCACAGTACAGAAAAAAGATCACAAATTTATCCAAAGTTAGCCATAAGAACTTTATGAATCTGCTCGGCTATTGTGAAGAAGAGAATCTTTTTACCAGAGCTATGGTGTTTGAGTATGCTCCAAACGGGACACTTTTTGAGTATCTCCATGTCAGGGAAGCTGAGAACTTGGACTGGATGGCACGGGTTAGGATATCGATGGGAATAGCTTACTGTCTAGAGCACATGCATCAGCTGAACCCACCTGTTGTGCCAAGGAACTTCAACTCGACAACTATATACCTGACTGATGATTTCGCTGCAAAGGTTTCAGATCTTGATTTCTGGAACGACAGTAAGGGATCCTTCAATTCTGCTACTTCTGATGAAACCGTCATGGTGGAGATAGATAGCATGGTGCATCAATATGGCATAATACTGCTGGAGATATTGACCGGAAGAGTTCCCTACTCTGAGTCAGATGGGCCACTGGAGCATTGGGCATCTGGTTACTTTGAAGGCAAGATGACTCTTGCAGAGCTGATTGACCCAAGCCTGGGATCATTCCCTGAAGACGCTGCGCGTGCATTGTGCGATGTGGCGAGGTGGTGCATTGAGCCAGAGCCGAGCAAGAGGCCGCTCATGTCACAGGTTGCAGGTCGGATGAAGGAGATCACCTCCCTGGGGCCTGAGGGAGCGACTCCAAAGGTGTCGCCGCTATGGTGGGCGGAGCTGGAGATCATGTCTGGCCAAGCTACCTAG
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| Protein seq | MALPLLRLLLLLVLSSVPLSCQLAHSTAADTQNWGQTSVVHLRNAHTRKLLGLLDDISGRTGSLHALLLEESPKQAPPHHHNRHGGHHRAAHTPAPSPAPSPSPFTAPPKSASPAAITIPISPSTPQPKAESNPAVEDAPAQPRHSWRNYGLVTAGSAVFLVMTIASVIYCRAKKVGTVRPWATGLSGQLQRAFVTGVPSLKRSELEAACEDFSNIIGSTSSCMLYKGTLSSGVEIAVLTSSTESGKEWSKECESQYRKKITNLSKVSHKNFMNLLGYCEEENLFTRAMVFEYAPNGTLFEYLHVREAENLDWMARVRISMGIAYCLEHMHQLNPPVVPRNFNSTTIYLTDDFAAKVSDLDFWNDSKGSFNSATSDETVMVEIDSMVHQYGIILLEILTGRVPYSESDGPLEHWASGYFEGKMTLAELIDPSLGSFPEDAARALCDVARWCIEPEPSKRPLMSQVAGRMKEITSLGPEGATPKVSPLWWAELEIMSGQAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.255745 | 0.133157 | 0.415500 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0693000 | RBH | 0.395525 | 0.207058 | 1.688124 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18370 | RBH | 0.573247 | 0.485491 | 0.777770 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0693000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028690 | RBH | 0.000000 | 2.613681 | 9.104989 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028750 | RBH | 0.000000 | 2.050604 | 0.725287 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0028560 | RBH | 0.000000 | 11.097419 | 8.164824 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0028340 | RBH | 0.0 | 0.711119 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0028640 | RBH | 2.603647 | 12.420672 | 11.383951 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0479800 | RBH | 9.449383 | 4.8634965 | 4.7683925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0029090 | RBH | 0.071563 | 1.501617 | 0.460062 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0494200 | RBH | 9.6672015 | 2.436273 | 12.8783785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0028340 | RBH | 0.041319 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028830 | RBH | 0.170969 | 7.873735 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0028510 | RBH | 0.000000 | 11.782595 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028860 | RBH | 0.176051 | 1.306532 | 1.588885 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0028430 | RBH | 0.146800 | 8.052456 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G028490 | RBH | 0.0 | 9.602135 | 4.478391 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0028220 | RBH | 0.591693 | 10.293051 | 6.475635 |
