Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g46720 | OGI:07076340 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:27926158-27930654 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAACCCTAACCTCCGAAGTCGCGCGGTCGCCGCCGCCGACGAACTTTGCGGCGGCGATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCGGGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCGTCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACGCCATCTCCGAAGGTACGGCGCCTTCTCGCCTCCGCCGATCCCCTGCTCGCTCTCCTGAATGATTGATAGGTGATGCGATGGTTGAGTGGTCGTGTGCAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCAAGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGTCCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGCTCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGGTTGTTGATTTCACATTTGCGCTTGTTTCTACTGTATGTTTGATGACATCGTATTGTAACTGATCTGAATAGGGGCATGTGGCCATGTGGGGGTGGATGGTAGCACTATGCCTTCTGCAGTTCTGCACTGGTGCAATCTCAGTTACTGCAATAGTATTGTGTCGCTGATCGATGTTTTGATGCTTATACTGCACTCGGAAAACTTGAAGTCCTGATCAAATTACAAATTCTAATGCTCCTAGCTTAAATTTTATTTTGCGTGAATTTGGTCTGTAGAGTTACTGACTATAGGATTTTACTACTTGCTGCTTGACATAGCATCTTTGTTATCCAATGCAACTTTACTAGACTATGAAGTGATTTGCCTGGAACTCCATACAGAGAGGTTCTGCATTATAACCCTCTGTTATTGCTACCATGTTTGTTGGACTGCAATGCTTTGATGCTTTCATATGTTCCTTGCATAAAATGGTTTTTTTCCTGTTATTGTTTGTTTACTTGCTCCTTTGTTTTCGATTGCAGCCAACTGACTTGGAAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGGTTTGTTGCCATCTTTTGCTTAATTTACATGTTCATTGTTTAGTGATTTTTATTTAGATTTTTAGATGTTGTGACTGGAATTTAATCACCTCAATTATGTTTTGATGCTGATGTGTCCTGAAAATATTCTAGTTGTTTGTTCTTGATTTCATTTGCTCCATGGTATCCCAGATTGTCTTTGGTTATATTTTGGTATCTTACTCCTAGAAATGCTATGCCGTGGGCATGCAGTTATACCATCTTTACATTCACATGGTCCAGCTGAGAAAGACTGGACCACCAGCATGGCCTCTCTATTTATCCTTTATGGTTAAATTGAATTTGCTCGATTCCTCTGATCACATTCATCCTCTTTGTATCTCTGCTGAATGTTCGAGTGAGTTCTAATGCAATTTAATATTTTTCCATGTATCTAAATGTTAAATTCTCAAGTATGGGTACTTCTGGTGTAGTGGTATACCATGTGGAGGATTCCTATAACATGCTGCAAGTGCATGCGACGTTTATGACTGGAACACTCTCATGTATATCTGTATTAGTTGTGATTACAATTTGGTTCTTTGTCAAGCCTCTTCTTTCCTCTCTTTTATGCAATGATAAATTCAGGTGGGGAATCTCTCCCCCCCCGGTGAGTTAGTCAAAAAAAAAAAATGTAAAGCTATATGCCATCGAGATATCAAACCGTCCACATGGCATTATCTCATGTTTTGTTATGCTTGTGATGGGCGTGGTAACAAACTTATTTTTACCAATTCTGTTGACGCAATACGTTTAAAATACTCTGTGCGATATTGGTATCGATGTAATAAATTGGTGCTTAACCACAATGCAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCAAAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTGATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGTAACTATAATACAATTTGCTCCATAATTGAGTATGTCCCTAATAGTCGCAGTAGTGGCTTCTTTGCAGTTCACTTATGTTCTCCATGGTGTTTTCAGGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTGAAATTGTTGGAGGCTTGGAGCTCGGTTAATCTCTCATGCTGGCAGTCTTTCAAATCTTGCGAAGTGCGCTGCTTCCACTCTTCAAATTCTTGGCGCTGAAAAGGCACTTTTCAGGTACTTAATACTTATGATCTTCTTATCTTCTTTCAATCCCTCATTGGTTATTGTCAGTTCCTTTCAAAGTCTTTTAAAGTGAAATATTTCAAATCTTTTTACCTTTATGATCTGTGAAATCTTACGATTGCTCTCTCCATTTAACTGCAGAGCTCTGAAAACTCGTGGTAACACACCCAAGTATGGCCTCATATTCCACTCATCTTTTATTGGCCGTGCGTCAACTAGGAACAAGGGCAGAATAGCTCGATACCTGGCAAATAAATGTTCCATTGCCTCACGCATCGACTGTTATTCAGGTTAGTTGAGAACTTTGTTAGCATGCTTTACACATGGTTATTATCTGATCTATGTTTTTCTCATTTGATTGTGGATTCCAGAGTTGAATACCTCAGTTTTCGGTCAGAAGCTGCGCGAACAAGTTGAGGAGAGACTAGACTTCTATGACAAGGGTATTGCACCGCGTAAGAACCTTGATGTGATGAAAGCTGCTATTAATGATATGACAAATGCCGTCTCAGAGGATGGTGGTGGTAAGGGCTCTTTGTTCATTCATATCTGTCAGATTGGTACAACTTGTATTTCATGTAAGCATATTAATTTTTAATTTACACGCTGGCCAAAAAAATTCTTTCAGAAAAAGAGAAGAACGACACATCTGCTAAGAAAAATAAGAAAAAGAAGTCTAAAGCTGAAGCTGATGGTGAAGAAATGGACCTTGATAAGCCTGCCAAGGTTGCTGCAGAAGAGACTGATCCAGAAAATGAGAATAAGAAGAAAAAGAAGCACAAGCTAGAGGAGCCACAGGATCAGGAGATGGCAGTCAATGGCAATCTCGAACAAGATGAAACTCCCAAGAAGAAGAAAAAGAAGAAGCCGGAGGCTTCAGAAGATGTTGAGCCTAGGACAGCCACTGAAGGAAAGAAGAGAAAGAAGAAAAAGTCCAAAACATTGTTGATAATGAGTCATGATCAACTTAAGTGTCAAGGATAACATTGCTGCTCTGGTTAGAGCTTCCTTGTAACATTGCTGCTGTTCTGGGTATCAAAATTCTAGTTAGGGCCTAGGGGTTCCTCTAAGAGTTACATGTGATGCATATCACCTTGGATGGAGCCTTTTCTTTTCAGATAGCTTAATTACCATCTTATCGTAGTATCGCCTGTGAAATCCCAAACATGTATACAAGTTTGCATTGTAATCTGACTCATGGGGCAGCACATGTCCTTGTTGCCAGTCAAGAATGTTGCAGGTTTGTGTTGCAGCTAGCTAATCACTTGCGTTGCAGAGATGATGCAAAACTGCGTTTGCTCTTGCTCCTCCTCCTCTTGATCTTCCTGTCTGATGCGAGGTTCTTCTTCCTGTCTACTTCAAGGGTGTTCTTCCTGTCTACAGCGAGGTCCTTCAGTACCTGTTCGACTTCTTGAACAACACCAAGTCTTCTGAGCCATCCTGCAAGCAGCTGAGAAGGTTCTTGGCCAATAATAACGCCGTTCTCCTCGAGCTCTGTCAAAAATGCCAGTGCTCCTTCTAGCCTGTTCACCTTCTCATAAGCCCCCAATATCAAAGCAATGCATTTGTTGCACGGTGTGATTCTCGCGCTTCTCATATTCCGTGTTACTATCATCGCTTCGTTGATTCGATCCGCGAGGCAGTAAGCATTCACCAGAAGTGCGCAAAGCTTTGTGTCAGGTACTATCCCTGCGAATTGTATGGCATCGAAAACTCGCTGTGCCCCTTCTGAATCGCCTTTGTATGAATAGGCTCTCAGCAATGCCTTGTAAACTTCCTTTCCTGCAACAATCTGCTGATCCCCCATTTCACTGATCATGTCTTCTGCTTTGTCTAACATGTCAGCCCTGATGTAAGCCATGATC
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| CDS seq | ATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCGGGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCGTCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACGCCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCAAGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGTCCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGCTCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGGAAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCAAAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTGATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTGAAATTGTTGGAGGCTTGGAGCTCGGTTAA
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| Protein seq | MALYLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDALNQCNAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFVQELLRGVRLHFDHFIDQLKPTDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYVYSKIAKFVVNKSDLAEKDIPALADIIGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAQRVMNLSEYRKNLYEYLVTKMNDIAPNLTSLIGEIVGGLELG |
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| Function | Nucleolar protein 56 [UniProtKB/Swiss-Prot:O94514] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g46720 | LOC_Os07g46720.1 | Chr07 | 27926158 | 27930654 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCGGGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCGTCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACGCCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCAAGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGTCCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGCTCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGGAAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCAAAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTGATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTGAAATTGTTGGAGGCTTGGAGCTCGGTTAA
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| Protein seq | MALYLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDALNQCNAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFVQELLRGVRLHFDHFIDQLKPTDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYVYSKIAKFVVNKSDLAEKDIPALADIIGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAQRVMNLSEYRKNLYEYLVTKMNDIAPNLTSLIGEIVGGLELG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g46720 | LOC_Os07g46720.2 | Chr07 | 27926173 | 27930654 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCTGTACCTGCTCTTCGAGTCGGCGTCGGGGTACGCGCTGTTCCACGCCCACGGCGTCGACGAGATCGGGCAGGGCGTGGACGCCGCCCGCGCCTCCGTGCTCGAGCTCCAGCGGTTCAGCAAGGCCGTCAAGCTCGCCGGCTTCTCCCCCTTCTCCTCCGCCGTCGACGCGCTCAACCAGTGCAACGCCATCTCCGAAGGGATTATGACTGATGAGCTGAGGAGCTTCCTGGAGCTCAATTTGCCCAAGGTGAAGGAGGGGAAGAAGGCTAAGTACAGCGTCGGGGTCATGGAGCCCAAGGTCGGGTCCCATATCTCCGAGGCCACCGGGATCCCCTGCCAGTGCAATGAGTTCGTCCAGGAACTGCTCCGCGGAGTGCGGCTACACTTCGATCATTTCATTGATCAACTCAAGCCAACTGACTTGGAAAAGGCTCAGCTAGGCCTGGGGCATAGCTATAGCAGGGCAAAGGTTAAGTTCAATGTGAACCGTGTGGATAACATGGTAATTCAAGCGATTTTTTTGTTGGATACACTTGATAAGGATATCAATTCCTTCTCCATGAGAGTGAGGGAATGGTATTCTTGGCATTTTCCTGAGCTGGTCAAAATCGTGAATGATAACTACGTTTATTCTAAGATTGCAAAGTTTGTGGTGAACAAATCTGATTTAGCAGAAAAAGACATCCCAGCTTTAGCAGATATAATTGGAGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGTAACAAAGATGAATGACATTGCACCAAATCTGACATCATTGATTGGTGAAATTGTTGGAGGCTTGGAGCTCGGTTAA
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| Protein seq | MALYLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDALNQCNAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFVQELLRGVRLHFDHFIDQLKPTDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYVYSKIAKFVVNKSDLAEKDIPALADIIGDEDKAKEIVEAAKASMGQDLSPVDLINVQQFAQRVMNLSEYRKNLYEYLVTKMNDIAPNLTSLIGEIVGGLELG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.257391 | 0.582908 | 0.057124 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0661800 | RBH | 0.751444 | 0.606322 | 0.306165 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22880 | RBH | 5.487688 | 5.778669 | 4.135401 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0661800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026560 | RBH | 0.100752 | 0.000000 | 0.232994 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026610 | RBH | 0.000000 | 1.727109 | 0.323363 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026430 | RBH | 0.000000 | 0.000000 | 2.114039 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026190 | RBH | 0.073368 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026440 | RBH | 1.452790 | 1.948472 | 4.821792 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0453400 | RBH | 0.8964195 | 5.596113 | 1.5051095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026930 | RBH | 0.194775 | 0.116806 | 0.258278 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0466100 | RBH | 0.713086 | 4.1927565 | 2.709038 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026200 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026640 | RBH | 0.000000 | 2.983885 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026300 | RBH | 0.0 | 4.783084 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026710 | RBH | 0.156079 | 0.163448 | 0.267136 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026220 | RBH | 0.0 | 1.316421 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026340 | RBH | 0.539807 | 0.816880 | 0.551922 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026130 | RBH | 0.000000 | 0.000000 | 1.883281 |
