Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g43580 | OGI:07072300 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:26075299-26077154 | ||||||||
| Gene Symbol | R2R3-MYB | ||||||||||
| DNA seq | TTTTTTTTGGTTCCTTTTTTCCGATGCCAATTCCTGGCAGGGTATTTATACTCCACATTTGAGTATTTTATTCACAGGCAAATTATTACATTAACCTCTTCTTTTTACTACAAATTTTTAGACAAACAGATATATATGTACTCCCACCTTTTGAGTATTTGACAAACACCTAAAAAGGAAAATTAAAAATTTGACAAAGCCCACTGATTAAATTATCTACTGACTAGAGTTAGTGATACAGCAGTATATGACATACTCACGTTATTCTCTCTCACACTCGCTGCATCTTGCAAACGTGTGGAGATCTACTTAATTAGTAAACCTTGTTACTAGTGATTTGATTAATCCAAGCTAAAAACCAAAATTACCATGACCATATTCAGTCGCAGTAACAACAATTAACAGTAGAGCAACGCCTCTAATCCCCTTCTTTTTTTTTCCTAAGCGAAAACTACGCAGATCCCAAGTGATTAATCAAGAGAGAAATCAAGATCAAGAGGACTTCAGGATCTGTGTAGTTTTCGATTTTTCTTTTTTCAGGTTGGGCTAGTGATGAACTCGCTGCTCACTCTCGCTTACGCTACGATTCTTGCATGGTTTGGTGGTGGTGTGGATTAGAAGGTGTAATCCATGGCCGCGTCGAGCAAGCTGCCACTCTCGATGCCGTCGGCGTCGGCGAACAGCCACGACTCGATGGCGGAGAGCTGCGTCTCGTCGCCGGCGTCGGCGGCGGCGGCGGCGGTGACGGTCGGCTTTGTCTCGTACTCGAAGGCGGACGCGGGCGCCGCCGCTGCGGACAAGGCCGTGCCGCCGTAGGACACCTCGGAGGCTTCCGACGAGCCGGACGCGCTCTCGGTGGCGCCGGGGGTGGCCGGCCCGCTGCCGGCGGCGCGCCTGCCGCCGCCGCCGCCCTTCTTCCGGGCCCACCCGTCGAGCATCCGGGAGATGTTCTCGGTGGTGAGGACGTAGCCGGCGGATGACGGGGAGCACTGCGACGCCCCCGACGTGCTCGACGCGGCGGGGCTATCGGCGCCGGCGGACGCTGCTGCTCCGGTGGTGGCGCCGCCTCCCCCCGCGGCGGCGTTGGCGGCGTCGGGCTGATGCGGTGGCTTGACGTCGTCGAGCGACGTGAGCGCCTCGCGGAGCGCGCGGCGCGCCATGTCGATGTCGGTCTGCAGGCGCCGCTCCCACTGCCCCTTGGACGACGACGCGGGCCTCTGCGCGGCGGGCTTCGGGGAGACCGCGTCGCCGGCGGCGCCACCGTCTCCGTCACCGCCGGCGCCGCCGCCCTGCAGCTTGCGCTTGAGGTGGGTGTTCCAGTAGTTCTTGATGTCGTTGTCCGTGCGCTCGGGGAGGTACGACGCGATGGCCGCCCAGCGGTTGCCGAGGAGCGCCTGGAGGTGGACGATGAGCTTCTCCTCCTGGTCGGTGAAGTTTCCCCGCTTGATCCCGGGCCTCAGGTAGTTGGTCCACCGGAGCCTACAGCTCTTGCTGCACCGCATCAGCCCTGCAAGCAACCATTTCGACAAACACCTCGCACGCGTCAGAATCAAGAAGAAGAAGAAGCCATCCTAGCTCAGGCGGTACAAGTGATCGTCACCTGTTCTGGTCGGGACGGCGCGCCAGTTGCCGGGGCCGTGCTCCTGGACGTAGGAGACGAGGACGAGGTCCTCCTCCGGCGTCCACGGGCCCTTCTTGACGCCGTCCTTGTCGCAGCACGGCGGCCTCACCATGGTCGATGGAGATCCAAGAACTGGAAAGCTGGATTTCTCAGATCGATGGATGGATGGATGAGTTTGATGTTGCAAGAGAGGAGGAGAGTTTGGTGGTGGAGAGTGAGAGGAAGACAAGGGTCC
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| CDS seq | ATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGCGCAAGCTGCAGGGCGGCGGCGCCGGCGGTGACGGAGACGGTGGCGCCGCCGGCGACGCGGTCTCCCCGAAGCCCGCCGCGCAGAGGCCCGCGTCGTCGTCCAAGGGGCAGTGGGAGCGGCGCCTGCAGACCGACATCGACATGGCGCGCCGCGCGCTCCGCGAGGCGCTCACGTCGCTCGACGACGTCAAGCCACCGCATCAGCCCGACGCCGCCAACGCCGCCGCGGGGGGAGGCGGCGCCACCACCGGAGCAGCAGCGTCCGCCGGCGCCGATAGCCCCGCCGCGTCGAGCACGTCGGGGGCGTCGCAGTGCTCCCCGTCATCCGCCGGCTACGTCCTCACCACCGAGAACATCTCCCGGATGCTCGACGGGTGGGCCCGGAAGAAGGGCGGCGGCGGCGGCAGGCGCGCCGCCGGCAGCGGGCCGGCCACCCCCGGCGCCACCGAGAGCGCGTCCGGCTCGTCGGAAGCCTCCGAGGTGTCCTACGGCGGCACGGCCTTGTCCGCAGCGGCGGCGCCCGCGTCCGCCTTCGAGTACGAGACAAAGCCGACCGTCACCGCCGCCGCCGCCGCCGACGCCGGCGACGAGACGCAGCTCTCCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCGACGCGGCCATGGATTACACCTTCTAA
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| Protein seq | MVRPPCCDKDGVKKGPWTPEEDLVLVSYVQEHGPGNWRAVPTRTGLMRCSKSCRLRWTNYLRPGIKRGNFTDQEEKLIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKRKLQGGGAGGDGDGGAAGDAVSPKPAAQRPASSSKGQWERRLQTDIDMARRALREALTSLDDVKPPHQPDAANAAAGGGGATTGAAASAGADSPAASSTSGASQCSPSSAGYVLTTENISRMLDGWARKKGGGGGRRAAGSGPATPGATESASGSSEASEVSYGGTALSAAAAPASAFEYETKPTVTAAAAADAGDETQLSAIESWLFADADGIESGSLLDAAMDYTF |
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| Function | Transcription factor MYB30 [UniProtKB/Swiss-Prot:Q9SCU7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g43580 | LOC_Os07g43580.1 | Chr07 | 26075299 | 26077154 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGAGGCCGCCGTGCTGCGACAAGGACGGCGTCAAGAAGGGCCCGTGGACGCCGGAGGAGGACCTCGTCCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCGACCAGAACAGGGCTGATGCGGTGCAGCAAGAGCTGTAGGCTCCGGTGGACCAACTACCTGAGGCCCGGGATCAAGCGGGGAAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTCCTCGGCAACCGCTGGGCGGCCATCGCGTCGTACCTCCCCGAGCGCACGGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGCGCAAGCTGCAGGGCGGCGGCGCCGGCGGTGACGGAGACGGTGGCGCCGCCGGCGACGCGGTCTCCCCGAAGCCCGCCGCGCAGAGGCCCGCGTCGTCGTCCAAGGGGCAGTGGGAGCGGCGCCTGCAGACCGACATCGACATGGCGCGCCGCGCGCTCCGCGAGGCGCTCACGTCGCTCGACGACGTCAAGCCACCGCATCAGCCCGACGCCGCCAACGCCGCCGCGGGGGGAGGCGGCGCCACCACCGGAGCAGCAGCGTCCGCCGGCGCCGATAGCCCCGCCGCGTCGAGCACGTCGGGGGCGTCGCAGTGCTCCCCGTCATCCGCCGGCTACGTCCTCACCACCGAGAACATCTCCCGGATGCTCGACGGGTGGGCCCGGAAGAAGGGCGGCGGCGGCGGCAGGCGCGCCGCCGGCAGCGGGCCGGCCACCCCCGGCGCCACCGAGAGCGCGTCCGGCTCGTCGGAAGCCTCCGAGGTGTCCTACGGCGGCACGGCCTTGTCCGCAGCGGCGGCGCCCGCGTCCGCCTTCGAGTACGAGACAAAGCCGACCGTCACCGCCGCCGCCGCCGCCGACGCCGGCGACGAGACGCAGCTCTCCGCCATCGAGTCGTGGCTGTTCGCCGACGCCGACGGCATCGAGAGTGGCAGCTTGCTCGACGCGGCCATGGATTACACCTTCTAA
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| Protein seq | MVRPPCCDKDGVKKGPWTPEEDLVLVSYVQEHGPGNWRAVPTRTGLMRCSKSCRLRWTNYLRPGIKRGNFTDQEEKLIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKRKLQGGGAGGDGDGGAAGDAVSPKPAAQRPASSSKGQWERRLQTDIDMARRALREALTSLDDVKPPHQPDAANAAAGGGGATTGAAASAGADSPAASSTSGASQCSPSSAGYVLTTENISRMLDGWARKKGGGGGRRAAGSGPATPGATESASGSSEASEVSYGGTALSAAAAPASAFEYETKPTVTAAAAADAGDETQLSAIESWLFADADGIESGSLLDAAMDYTF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.095518 | 0.130403 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0629000 | RBH | 0.000000 | 0.159678 | 0.569578 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g26130 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0629000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024220 | RBH | 0.263824 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024270 | RBH | 0.208356 | 0.0 | 0.197061 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024140 | RBH | 0.0 | 0.0 | 0.817910 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024060 | RBH | 0.175900 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024190 | RBH | 1.202523 | 0.0 | 2.887299 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0428100 | RBH | 1.655506 | 0.4346965 | 5.9983845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024710 | RBH | 0.041347 | 0.0 | 0.110589 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0439000 | RBH | 2.706857 | 0.5366065 | 9.6270545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024100 | RBH | 0.000000 | 1.852487 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024030 | RBH | 1.454157 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023960 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023920 | RBH | 0.115374 | 0.549369 | 0.764932 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023940 | RBH | 0.0 | 0.0 | 1.983568 |
