Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g42940 | OGI:07071340 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:25717760-25722215 | ||||||||
| Gene Symbol | SAPK2, OsSAPK2, OsSnRK2.2, SnRK2.2 | ||||||||||
| DNA seq | ACTTCCCTCGACTACTCCACCTCCTTCGCCTCCGCCCCCATCATCAAAAGCCCCCCTCTCCTCTCCCCTCCTCCTCCCCTTCCACACCGCACCACTCCACGCCTTCCTCCTCTTCTCTCGCAGTCCACTCGCTGGTCTCTCCAATTCTTGGCTTCTTTGCTCTGCTGGATTAGCAGCAGCTGCTCTGCTTCTTGCTCTGCCCTTGTCTTTGGGCTTTCAGGGCGGTGTGCTGAGGCCGAGCGGTTTGGGCGGTCTCAAGAATCGCTTGTGCGTGCGGGGGAGTTGTCGTGGGAGGTGGGGATGGAGAGGTACGAGGTGATCAAGGACATAGGGTCGGGGAACTTCGGCGTGGCCAAGCTTGTCCGGGATGTGCGGACCAAGGAGCTGTTTGCCGTCAAGTTCATCGAGAGGGGGCAGAAGGTGAGGCAGAGATCGCGTTGGTTTACCCTCTCCCCCCCTTTATCTCTGTTGCTGTGTGAGTATCTTGTTTGCTTGCATAAACCCAGTTCTTGCAGGCGGGTTCTGATCAGATTCTTGATTTGTGGAAATTTTTGGATTTTTAGTTTAGGGTGCTTGTGCACGGAAAGGGTTTATCCTAATATTTTGGAGGAAATTTCCTTAAAATTGTTGCTGTTGATTTTATTGATTTGACTAATTGCTACTTGATATTGTGTATCTGGTTGACTGGTTCTGCCCCCATACAGTCTGATCGATCGCTTGGACCATCCATTGTGCTACCGTTCCTTTGATCTGCAATACTCCATAAAAAATCGGACTTTTTTTCTATATATTTTTGAGAACCTCCTTAATTCACTCCTTAATATGTGATTTCTTGGCCTTATATCACACTAGACTGTTCAATGCGGGTGACTCTCATCTTATCGCTGTTTCCGATTACAACAAAGAACTGAAATTTGCACCAGGGTGCTCTTGATCTGGCTCTATTGTTAGATGTTTATAAGTAAACTTTGATCTGCTAAAGCTTCTGTCCCTCATTTGACATCTGGGTTATGGGCCAATTCAATAAAACACATGTTGTGGCCATGTGAATGCTTTGCTCTGCCCAATTTACAAGGTCACCTTTTGGGTCCTGTTAAAGTTCATTGAACGCTCCATTTCTTGTTGATTCGTTTAAGGCGTAGTAGTAGTTAAATGAGGTACTTTAATTCGATTTCTACTTAGTATGGACACAACTAACATCGTTAATCAGTGCCACCATTATGTTATTATGTTAGGACTTGGGTTCATCGATCTGGGTTTATGTTATGTTACTACTCTTGTGTTCTAGAACACCTCAATTTTCCCAGCGTATTATTTTGGACCTAACCATTTTCTGTTCCCACCTCTCGCCTCTTTAGTGTCTTCATTGTTAACATTTCACCGTTCTTTTCAAACTAGGTTTCTTCAACCTTTTGGGTTCTACAGAGTTTTCTTATATGGTGTCTGATTGTCTTTGATTTGAATCAGCTCACTTTTTTTTTGTTTTTCTTTCATAGATCGACGAGAATGTCCAAAGGGAGATTATGAACCACAGGTCACTGAGGCATCCGAACATTGTTAGATTCAAGGAGGTAAGTCGCATGAATGATAAAAACTTTGAAATTCGTTTCTGCATACCTTGTTTTTAGTACGCTAAATTTTCTATATTTTTGTTGCTGAATGCATTTAAAGTTAGCCAAAAGATGCCCATATTCATAATTTCTCCTTAGGTTCTAAAACCTGTTAAGAAAACAAGCATTTCATATTTTCACTGGAAAAAGATTGGCAATATTCTGGTACAATTTTCAATCTTCCAAAAGATTATTGTAAAATTGCATAAATAAATTTTCATACTTGAAAGATTACCAAGATGAAAATGGTCTTCTGTAATGCTCGACTGTGAAGTCTGAACTATTTTGGTCAGTAGGAAAGCGATATCTGTGATCTATCCATCAATTCTAATAGGACAAATGGAATATGTAAAGAAAAAAGTTTATCCTAGTTGCAGAGTTCAAAGGACTCTTCTTGTATTGACTGTGACTCATACCTTTATGGTCTAAACTTCTAGTATAACTGCCCTCAGAGCTTTAGGAGCACTATTTTGTTTACTTAAGAGAATATGCTATATGTGGGCGCTGAACTTATTTGGTAGACTTTTTGTGTAGATTCTATATCTAAGCACATTATGGGTGTTTCCTTTTCTCTTCTTCTTTCCCTACACAAGACTAGAATGCCACTTCTTTAAACCGTTTAGGATTAATTCTGTTGGATACTTGCATGTTTATCAACACTCAGTTGCTAATATAGCTTGTCCTAGTGCCATGCCCTTGAGCTTGGGTAAGTACTTTAGTGGCTGAGACTTGAGGGCATCATGAGGCCATGACTTCTGTGAAAAAGCTCATAATTGCTCCTAATCATTCATTAAATGACTACTGGTACTGGAAATGAAAGTGACCCAGCAGGATATTATAGCCTCTTGTTCAAATCTTGACCGTGTTAAGCCTTGTTTGCATTTAACAGAAGCCAAATTATCTGAAAGTTGCATTATTCAACTATTTGATGGTAGTTTACATTCATTGTTGCTTTTCATATTGTCAAACATATATTTAGTAGAGACTAGCTTTAAGGAGTTAGGTGGATAATTGCAGGTATCTTGTTAATACCTCTGAGCATTAGAAATGGCTGTCATATTTTCTAAGATTTAAAGCTGTTGTCATAAGATTATATACTCAAAGAGAACACTTAGTTTTTCAGGTTGTGCTAACTCCCACACATTTGGCCATAGTTATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGTAGAGAATATTTACAAGTCATGATACTTAAAGATTATAAGATGATTCAATTTTGTTGATGGTTTATTCAACCTATCGACAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGGTACACAATAATCTGAAATCAAATTGTTGTTAGCAACTCAAATGCTCTATATCTTACATAATGATATATTGCCTTATTGTGTCAGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGGTAGTCAGGGAAGATTATGGCCTTTAAAAATCGCTGGCTTGGCAACTGAACTCTTATACTTACTCTCGAATTTTCTTTGCAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTAGTTTCTGATTTGCTATTTCTCATTTTTAATGGGCATACTCCTACTATCAAAGTTCCGAATCTCACCATATACAATTTAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTGTGAGTTACCCAACAACCATATATACCTATGAGATCCCTCATTCCATCTTGTTGACCTCAGCTCATGCTGCATCTTGATGTGTGGGAATAAAAGTTATAAGATCCTTGCAGCGGATACTAAGCGTACAATACATGGTTCCTGATTATGTTCGAGTTTCGATGGAATGCAGACATCTTCTGTCCCGGATTTTCGTGGCAAACCCAGAGCAAGTAATTCGTCTCTCAAACCAATTGTTCCTCTAGAACAAAACATTACATTTTGCTCTGTCCTCACCAGTCATTTCTTGCAGCGAATTACCATTCCTGAGATCAAGAACCACCCATGGTTCCTCAAGAACCTGCCGATCGAGATGACTGACGAGTACCAGATGAGCGTCCAGATGAACGACATCAACACCCCGTCACAGGGCCTGGAGGAGATCATGGCCATCATACAGGAGGCGCGGAAGCCGGGTGATGGCTCCAAATTCTCCGGGCAGATCCCGGGCCTAGGGAGCATGGAGCTCGACGACGTTGACACCGACGACATCGACGTCGAGGACAGCGGCGACTTCGTGTGCGCATTGTGACGAGGCCGTGAACTTGCTTTCTCTTCTTGGAGTGTGCTGCTCCTTTTGTTGTGCTGCTGTTCATTTCTGAGAGCTCCATTCTGTTGTTGTGTCAGTGTTTGTAAACGAGGTGCTGTGGATAATCTGAACTCTTTTATATGTTGGTGTTCTTAGCTGAATTCTTTGCGTCCTGCCTGCTTCCCTTTGAGCTATGTGCAGTTTCATCAGTCTCACAATGCATTCTCAATTTCTCATGTTTTGTTATCCTAGCTTTAGGGCCAATTTAGTAATCTCTATATGCGTTGCAGTTGATAACAAAGTTATTCATTTTGTTCATTGTACTGAACTCTTTCCCCCGAAAAGTTATCATACAAGGAGATGCAAACTGTTGTGAGAA
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| CDS seq | ATGGAGAGGTACGAGGTGATCAAGGACATAGGGTCGGGGAACTTCGGCGTGGCCAAGCTTGTCCGGGATGTGCGGACCAAGGAGCTGTTTGCCGTCAAGTTCATCGAGAGGGGGCAGAAGATCGACGAGAATGTCCAAAGGGAGATTATGAACCACAGGTCACTGAGGCATCCGAACATTGTTAGATTCAAGGAGGTTGTGCTAACTCCCACACATTTGGCCATAGTTATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTCGGATACTAAGCGTACAATACATGGTTCCTGATTATGTTCGAGTTTCGATGGAATGCAGACATCTTCTGTCCCGGATTTTCGTGGCAAACCCAGAGCAACGAATTACCATTCCTGAGATCAAGAACCACCCATGGTTCCTCAAGAACCTGCCGATCGAGATGACTGACGAGTACCAGATGAGCGTCCAGATGAACGACATCAACACCCCGTCACAGGGCCTGGAGGAGATCATGGCCATCATACAGGAGGCGCGGAAGCCGGGTGATGGCTCCAAATTCTCCGGGCAGATCCCGGGCCTAGGGAGCATGGAGCTCGACGACGTTGACACCGACGACATCGACGTCGAGGACAGCGGCGACTTCGTGTGCGCATTGTGA
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| Protein seq | MERYEVIKDIGSGNFGVAKLVRDVRTKELFAVKFIERGQKIDENVQREIMNHRSLRHPNIVRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITRILSVQYMVPDYVRVSMECRHLLSRIFVANPEQRITIPEIKNHPWFLKNLPIEMTDEYQMSVQMNDINTPSQGLEEIMAIIQEARKPGDGSKFSGQIPGLGSMELDDVDTDDIDVEDSGDFVCAL |
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| Function | Serine/threonine-protein kinase SAPK2 [UniProtKB/Swiss-Prot:Q0D4J7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.1 | Chr07 | 25717760 | 25722215 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGGTACGAGGTGATCAAGGACATAGGGTCGGGGAACTTCGGCGTGGCCAAGCTTGTCCGGGATGTGCGGACCAAGGAGCTGTTTGCCGTCAAGTTCATCGAGAGGGGGCAGAAGATCGACGAGAATGTCCAAAGGGAGATTATGAACCACAGGTCACTGAGGCATCCGAACATTGTTAGATTCAAGGAGGTTGTGCTAACTCCCACACATTTGGCCATAGTTATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTCGGATACTAAGCGTACAATACATGGTTCCTGATTATGTTCGAGTTTCGATGGAATGCAGACATCTTCTGTCCCGGATTTTCGTGGCAAACCCAGAGCAACGAATTACCATTCCTGAGATCAAGAACCACCCATGGTTCCTCAAGAACCTGCCGATCGAGATGACTGACGAGTACCAGATGAGCGTCCAGATGAACGACATCAACACCCCGTCACAGGGCCTGGAGGAGATCATGGCCATCATACAGGAGGCGCGGAAGCCGGGTGATGGCTCCAAATTCTCCGGGCAGATCCCGGGCCTAGGGAGCATGGAGCTCGACGACGTTGACACCGACGACATCGACGTCGAGGACAGCGGCGACTTCGTGTGCGCATTGTGA
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| Protein seq | MERYEVIKDIGSGNFGVAKLVRDVRTKELFAVKFIERGQKIDENVQREIMNHRSLRHPNIVRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITRILSVQYMVPDYVRVSMECRHLLSRIFVANPEQRITIPEIKNHPWFLKNLPIEMTDEYQMSVQMNDINTPSQGLEEIMAIIQEARKPGDGSKFSGQIPGLGSMELDDVDTDDIDVEDSGDFVCAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.2 | Chr07 | 25717807 | 25722009 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTCGGATACTAAGCGTACAATACATGGTTCCTGATTATGTTCGAGTTTCGATGGAATGCAGACATCTTCTGTCCCGGATTTTCGTGGCAAACCCAGAGCAACGAATTACCATTCCTGAGATCAAGAACCACCCATGGTTCCTCAAGAACCTGCCGATCGAGATGACTGACGAGTACCAGATGAGCGTCCAGATGAACGACATCAACACCCCGTCACAGGGCCTGGAGGAGATCATGGCCATCATACAGGAGGCGCGGAAGCCGGGTGATGGCTCCAAATTCTCCGGGCAGATCCCGGGCCTAGGGAGCATGGAGCTCGACGACGTTGACACCGACGACATCGACGTCGAGGACAGCGGCGACTTCGTGTGCGCATTGTGA
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| Protein seq | MEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITRILSVQYMVPDYVRVSMECRHLLSRIFVANPEQRITIPEIKNHPWFLKNLPIEMTDEYQMSVQMNDINTPSQGLEEIMAIIQEARKPGDGSKFSGQIPGLGSMELDDVDTDDIDVEDSGDFVCAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.3 | Chr07 | 25717807 | 25722009 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTCGGATACTAAGCGTACAATACATGGTTCCTGATTATGTTCGAGTTTCGATGGAATGCAGACATCTTCTGTCCCGGATTTTCGTGGCAAACCCAGAGCAACGAATTACCATTCCTGAGATCAAGAACCACCCATGGTTCCTCAAGAACCTGCCGATCGAGATGACTGACGAGTACCAGATGAGCGTCCAGATGAACGACATCAACACCCCGTCACAGGGCCTGGAGGAGATCATGGCCATCATACAGGAGGCGCGGAAGCCGGGTGATGGCTCCAAATTCTCCGGGCAGATCCCGGGCCTAGGGAGCATGGAGCTCGACGACGTTGACACCGACGACATCGACGTCGAGGACAGCGGCGACTTCGTGTGCGCATTGTGA
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| Protein seq | MEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITRILSVQYMVPDYVRVSMECRHLLSRIFVANPEQRITIPEIKNHPWFLKNLPIEMTDEYQMSVQMNDINTPSQGLEEIMAIIQEARKPGDGSKFSGQIPGLGSMELDDVDTDDIDVEDSGDFVCAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.4 | Chr07 | 25719969 | 25722009 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTCGGATACTAAGCGTACAATACATGGTTCCTGATTATGTTCGAGTTTCGATGGAATGCAGACATCTTCTGTCCCGGATTTTCGTGGCAAACCCAGAGCAACGAATTACCATTCCTGAGATCAAGAACCACCCATGGTTCCTCAAGAACCTGCCGATCGAGATGACTGACGAGTACCAGATGAGCGTCCAGATGAACGACATCAACACCCCGTCACAGGGCCTGGAGGAGATCATGGCCATCATACAGGAGGCGCGGAAGCCGGGTGATGGCTCCAAATTCTCCGGGCAGATCCCGGGCCTAGGGAGCATGGAGCTCGACGACGTTGACACCGACGACATCGACGTCGAGGACAGCGGCGACTTCGTGTGCGCATTGTGA
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| Protein seq | MEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITRILSVQYMVPDYVRVSMECRHLLSRIFVANPEQRITIPEIKNHPWFLKNLPIEMTDEYQMSVQMNDINTPSQGLEEIMAIIQEARKPGDGSKFSGQIPGLGSMELDDVDTDDIDVEDSGDFVCAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.5 | Chr07 | 25717760 | 25722215 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGGTACGAGGTGATCAAGGACATAGGGTCGGGGAACTTCGGCGTGGCCAAGCTTGTCCGGGATGTGCGGACCAAGGAGCTGTTTGCCGTCAAGTTCATCGAGAGGGGGCAGAAGATCGACGAGAATGTCCAAAGGGAGATTATGAACCACAGGTCACTGAGGCATCCGAACATTGTTAGATTCAAGGAGGTTGTGCTAACTCCCACACATTTGGCCATAGTTATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTGTGAGTTACCCAACAACCATATATACCTATGAGATCCCTCATTCCATCTTGTTGACCTCAGCTCATGCTGCATCTTGA
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| Protein seq | MERYEVIKDIGSGNFGVAKLVRDVRTKELFAVKFIERGQKIDENVQREIMNHRSLRHPNIVRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITVSYPTTIYTYEIPHSILLTSAHAAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.6 | Chr07 | 25717760 | 25722215 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGGTACGAGGTGATCAAGGACATAGGGTCGGGGAACTTCGGCGTGGCCAAGCTTGTCCGGGATGTGCGGACCAAGGAGCTGTTTGCCGTCAAGTTCATCGAGAGGGGGCAGAAGATCGACGAGAATGTCCAAAGGGAGATTATGAACCACAGGTCACTGAGGCATCCGAACATTGTTAGATTCAAGGAGGTTGTGCTAACTCCCACACATTTGGCCATAGTTATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTGTGAGTTACCCAACAACCATATATACCTATGAGATCCCTCATTCCATCTTGTTGACCTCAGCTCATGCTGCATCTTGA
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| Protein seq | MERYEVIKDIGSGNFGVAKLVRDVRTKELFAVKFIERGQKIDENVQREIMNHRSLRHPNIVRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITVSYPTTIYTYEIPHSILLTSAHAAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.7 | Chr07 | 25717766 | 25722207 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTCGGATACTAAGCGTACAATACATGGTTCCTGATTATGTTCGAGTTTCGATGGAATGCAGACATCTTCTGTCCCGGATTTTCGTGGCAAACCCAGAGCAAGTAATTCGTCTCTCAAACCAATTGTTCCTCTAG
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| Protein seq | MEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITRILSVQYMVPDYVRVSMECRHLLSRIFVANPEQVIRLSNQLFL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.8 | Chr07 | 25717807 | 25722009 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGGTACGAGGTGATCAAGGACATAGGGTCGGGGAACTTCGGCGTGGCCAAGCTTGTCCGGGATGTGCGGACCAAGGAGCTGTTTGCCGTCAAGTTCATCGAGAGGGGGCAGAAGATCGACGAGAATGTCCAAAGGGAGATTATGAACCACAGGTCACTGAGGCATCCGAACATTGTTAGATTCAAGGAGGTTGTGCTAACTCCCACACATTTGGCCATAGTTATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGGTACACAATAATCTGAAATCAAATTGTTGTTAG
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| Protein seq | MERYEVIKDIGSGNFGVAKLVRDVRTKELFAVKFIERGQKIDENVQREIMNHRSLRHPNIVRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMVHNNLKSNCC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g42940 | LOC_Os07g42940.9 | Chr07 | 25717760 | 25722215 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGGTACGAGGTGATCAAGGACATAGGGTCGGGGAACTTCGGCGTGGCCAAGCTTGTCCGGGATGTGCGGACCAAGGAGCTGTTTGCCGTCAAGTTCATCGAGAGGGGGCAGAAGATCGACGAGAATGTCCAAAGGGAGATTATGAACCACAGGTCACTGAGGCATCCGAACATTGTTAGATTCAAGGAGGTTGTGCTAACTCCCACACATTTGGCCATAGTTATGGAATATGCTGCTGGAGGTGAGCTATTCGAAAGGATTTGCAGTGCTGGGAGGTTTAGCGAGGATGAGGCAAGGTTCTTCTTCCAGCAGTTGATTTCAGGAGTTAGCTACTGTCATTCCATGCAAATATGTCATAGAGATTTGAAACTAGAAAATACTCTCTTGGATGGGAGCATAGCACCTCGGCTCAAGATATGTGATTTTGGTTACTCAAAGTCCTCTTTGTTGCACTCTCAACCGAAATCTACTGTCGGTACTCCAGCTTATATCGCTCCTGAGGTCCTTGCTAGAAAAGAATATGATGGAAAGGTTGCTGACGTTTGGTCATGTGGAGTAACTCTATATGTGATGCTTGTTGGTGCGTACCCCTTTGAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTACATCTTCTGTCCCGGATTTTCGTGGCAAACCCAGAGCAACGAATTACCATTCCTGA
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| Protein seq | MERYEVIKDIGSGNFGVAKLVRDVRTKELFAVKFIERGQKIDENVQREIMNHRSLRHPNIVRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSIAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLARKEYDGKVADVWSCGVTLYVMLVGAYPFEDPDEPRNFRKTITTSSVPDFRGKPRATNYHS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.987477 | 1.514385 | 2.625996 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0622000 | RBH | 4.870848 | 3.188323 | 12.555880 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27280 | RBH | 0.448801 | 0.474804 | 1.607214 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0622000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023700 | RBH | 1.157199 | 101.209763 | 10.787873 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023770 | RBH | 0.768651 | 11.678348 | 5.138052 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023630 | RBH | 2.714794 | 76.696594 | 14.141540 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023560 | RBH | 0.466574 | 1.285549 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023670 | RBH | 7.845781 | 50.989571 | 34.392212 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0421900 | SBH | 11.3945355 | 32.6093505 | 14.5273875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024180 | RBH | 0.752882 | 4.256591 | 1.969603 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0432400 | RBH | 13.298285 | 32.347991 | 13.2696 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023440 | RBH | 0.623349 | 0.781637 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023590 | RBH | 1.257696 | 33.730030 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023490 | RBH | 9.727796 | 77.947273 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023690 | RBH | 2.752775 | 2.541761 | 3.536448 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023450 | RBH | 0.729308 | 22.826500 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023380 | RBH | 0.677952 | 5.283790 | 4.610533 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023410 | RBH | 2.409385 | 33.744446 | 14.640483 |
