Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g41370 | OGI:07068840 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:24788476-24793884 | ||||||||
| Gene Symbol | MADS18, OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28 | ||||||||||
| DNA seq | CTCCCCCCATTTCCATCTTCCCCGAGCTCTCCACCCTCCACCCGCCACCGCCACCGCCGCCTTCGCCGCCGCCGCCGCCGCCGACGACGATGGGGAGAGGGCCGGTGCAGCTGCGGCGGATCGAGAACAAGATAAACAGGCAGGTGACCTTCTCCAAGCGGAGGAACGGGCTGCTGAAGAAGGCGCACGAGATCTCCGTGCTCTGTGACGCCGACGTCGCGCTCATCGTCTTCTCCACCAAGGGCAAGCTCTACGAGTTCTCCAGCCACTCCAGGTACGCACGCGCTTAGCTCCTCCTCCTCCTCCTCCTCCTCTCCGCGACCTCCCGCCTACCTACGTAGTACGGCCCATGCCCGTCGCCTTTCCTCGCCGCGCGCGCGCCATGGGCGAGCTCGCGGAGCTCCCCGTTCCTGGGCGGCTTGTTGATGCGTTCGATTTCGTTTCGTACGGGTTCCTGCCTTGTGTTCGATCGTTTCCGCTGCGGAATGCGAGGGGGCTGGTGGTGTTGGTGCGTGTACGATTGCTATTATTTCGTGCTGATTGATTTCTCTCATGTGCTCTCTGATTGCACATACGGTTCATGGCTTTGTACGTGTTCGTTCGTGCGATTGCTGCTTAGCTCGGGATGGAGTTGCTCGCGAAGTCTAGCTAGTTGTAGGTTGCTTGTGTCCCCTGGATTACAGCTCTCTATGTGATGCTGGCATGCTGCTGCTGCTGCTGCCATGCATATCAGAAGCTAGTAATATACAGTGGTGGTACATGCACTGTTGCTGATTTAGCTTTATATGCTGCTCAGTTTTGTTCTTGGGGACTCATCAATCATCGTAGCATTGGTGAACACGTTCACTTCCATTTTTTTTTGTATAAAAAGGAATGGAATAATAGGTGAAAAAAAATTCATGTGCTTCATCAGTACGGGCGGAAAGAAAGATATGTTTAAATTTTAATTAGTGTGCTTATCTAGGTTTATCATATGCTTATACTCTTGTGTACTGTAGCATATACAAGTGATGCTTATTACCAAAGCCTAGCTAGGCCGGTAAACTTGTATTATTTGTCTCGTTATTTCTGGAAATCATTAGAGCAGCACTTCAGTTGAAATATGCACGGACGCCTTGCTAATTAAGCGGCTCCTCTAACCAGGCCAGTAAGGTCTTAAGTTACTGACAACTCCTGGACTGGTATAAATGGCGCGGCCAGCTTTACATGACATATGGTTTGATACTTTTGTTTAGTTAATTTCGAGGTGGAATATAAGGTGACCAGCTTACTTAACTTGTTCATTTGATGCATTCGGTTTCATTTCCCTTTTTTTTTTTAAGATAATGGGAAGTAAATTAATACCCGGCCTTGCTTTAACTGAAACTACAACTTTCTTTTGTCCCTTTAGTGTGTACTGTCACCAAGTTAGCTATACATGGTGCAAGTTGCCATTGCCCATTGCTATTAACTTGCTCTCACAAATTGGGGTGTTTATTTCTTGAAATGGATTTTTTAGGACAACAATAAACTGATTGACATAGCTATACTGTTCAAGTATAACCATGTTTATGGTTTTCAATTAAGCAAACTGCTTATGTTTATGCTAATATCTTTTGTTTAATGGGAGGAATTTAAATATTTCATTATTGGTATTCCTATACTCTATTATTTCATAATATTTGGCAATTTTGACCGGTGATTGCTTCAGTTTAACCATTAATATCTTTTAAAATTTATGATTATGATGGATGGGATTTATATCTCTATATTTACCATTACCATGTAACATACTTTAATAATATGTTACATAATCTAATACTAAAAGTTTATTTATAAAATTGGAATGGCCAAACTAAAACAATGCGAACTTAAAATCACCAAGTATTATGAAATGGAGGGAGCATAATATCAGTAGCTCGTAAGGGAAAAAAGGGACCTAAATGATGCCTTTTGTGATAAATATAATTTCAAATTTGCAAAATTTTTGGATAGGCAACAATACTCTCTCATTATTGTGTTAGTATTAAGGTCAAGCTACTTCTATGCTACCAAATACTCCTTCTGTTCCTTTTTTTATTTCTTGTCTAGGATATTGACATTATCCCTAACACACATCTTTCTTTGTATGATCATCTACTCATAAAATAGTTAAAATATAACTACATTATTCAATTATGAATCTATGAATGTTATTTTTATACACCGAGTTGGGAACTATTCTAAACTCTCGAGGGGACATCCCCTCATTATCTGCATGTTATCCAAACGGTTGTGAAAAAAATTGAAAAAAAATAAACAAGATAGATTAATATGTGATAAATCACTCCACAAACATGCAAGGACAAATTCAAATTCTACAAGTTGCAATGAAAAAATTAAATTTGACCGTGAATATACATTAACTAGCCATAGTTTAATTTTTTTTTGTTGTAACTTGTAGAAGTTGAATTTGAACTTGCATGTTTGTGAAGTAATCTATCACATATTAATCTATCTTGTCGATTTTTTTTTAAAAAAATCATAACCATTTAGATGACATGCAAAAAACGAGGGGATGTTCCCTTGAGAGTTTAGAATCCATTCTCCAGTGAGTTGATGTTGAGATTTGATTACACATTTCAAAACGACTTTTATTTGTTAACGAAGGGAGTAATGTGGATTCACCATATGTACTAATGTTATTAAGGCCAGATAATCCTTTTTTTAATCATTCTAATTAGATATAAACTTACGACGAAGAACATGAATGGATAAAGTTTCAGCCAACAAATACAAATGTTTTTCAAAGTGCTATTTCTGATGCATAATTTTTGTAGCAGTTATGATTTAAATTTATACATGGATAATTTGAATAATGGATCCTACTTTTGTAGTTGTCACCTGACAAGCCTTAAGAATTATTGAGGGTACAAAAATTATAACTGTGCATTTGTTTGATATTGCTCTAAGACTATGCTTGGCATCATCTTTTGATGCATTGGTCAAACCAAAGCATAATCATGTGATACTTCTTCTGTAGTATGGAAGGGATCCTTGAACGCTACCAGCGTTACTCGTTTGATGAAAGAGCCGTACTGGAGCCAAATACTGAGGACCAGGTAAAAAAACATCCCTGACTGTTGGAGAACTATCTCCGGCTGTTTATTTAACTAGCTGGTTAGTTATCTGATCTTGATATTCATTTTCTCCTAGGAAAACTGGGGTGATGAATATGGAATTTTGAAGTCCAAACTGGATGCACTTCAGAAGAGCCAAAGGTACTGCAAACTTTCTTAAGAAATTTTCACTTTGGTAACAAGATTATGCTAACTTGAGTTGGTCTATCTACTGCTCAAGGCAACTCTTAGGTGAACAATTGGACACACTAACAATAAAAGAACTCCAGCAATTGGAACATCAACTGGAATATTCTCTGAAGCATATAAGATCAAAAAAGGTGAAATTTGTGTCCATTATGCACTGTTGACTGAGGGATCAAATTTGCTTGATTTAATTATTTCCAACTAATCTTTGAAAACATCATTACTTTCCTTTTTGTTTTTCTTTTGCAGAATCAGCTTCTGTTTGAATCAATTTCTGAGCTTCAGAAGAAGGTAGGTTACCCTCAATGTGGCTCCTTAAATAGCAATGTAGCAGTCTGTTTATACCATATTGTTTTGGAGTATTAAAGTTGCATTCAAACAATTTTCAGACAACTAACTCTTCTTGCCTTCTACCAGAATATATTCATGTAAAACATGTCTTTTGGCAATTCTAGAAATTCCATTATAAGAAGAAATCATTAGTCAATTTGAATCACCTAAGGAACTAACGAGAAGCCACTTGTCTTGGTCATATTGTGGGAAATGCACAATGTTGTCAAATGGGTATAACAGGAAAGTCGCCATCAATGTATATATTCTAGGGGAGAGAGAACAGACTAAGTCAGACTACGTTGTAAAATTGAACATTCTACGGGAAAATAAATCTTCGATGCATATGGCAAGGACTTGACCGTTAGCCTTTTACGCAATAATGTATGCATAAACATAGGGAAAAAAAAGGACCTGCACTACTGATTGTTACTGTATCTGATCTGGCAAGTGGCAACAGAGCCATGTTAATATTGTGCTGAGAAATGGACGAAGTTGATATAGGTTCGTGCTGATGAATATTCTTACAATCTGCTATCTTCCTGTCTGCAGGAAAAGTCACTTAAAAACCAGAATAATGTTCTGCAAAAGGTAAATTTCATTCTTGTTTACAACAATGTTTTATATCAGATCACTACAAAAGCTGTATTGGAGGTCAAACCCTTTTGTCTACATTCTTCGGAGCAGCTCATGGAGACAGAAAAGGAGAAAAACAATGCTATAATAAACACTAACCGGGAGGAGCAAAATGGAGCAACACCAAGCACATCATCACCAACACCAGTGACGGCTCCAGATCCCATCCCGACAACAAATAACAGGTACCGCTTTTACTTCCATATATTTTGCCCCTGCACTCACCATAAATAAAACAAAACTCTGTTTTGTTCTTCAGCAAATTTTTATTCTATATTTTTTCTTTTATCAGACTTCCATTATCTATCACAGTTCAGTAGTTTTTGATGGTCTATGCCTAGGAAACTTAATCCGGTGAAATTTGTTCAATCAAATGCTGCCGGTCTATTTCATATGGCTATTGGAAGTTTGGAACAAATAAGCCCAGGCCTGAAAGCGCCTGAACCAAACAGTGAAAAAGCCTCCAAATGGTTTGGTCTCAGCTTGATATATCATGTCTGAACAATAACTTGACGTTAGGAATGATCTAGCATGTTACTACTATTTCATCAACTCCATTGTCTGTTTTAGTTATGCTGTTTTTCCTCATCTTAATTCAGTCAAAGCCAACCAAGAGGATCAGGGGAGTCAGAAGCTCAACCGTCTCCGGCACAAGCAGGCAACAGCAAGCTTCCGCCATGGATGCTCCGGACAAGTCACACATGAAGGCATCTGTTGATCTCAAACGTCACTCCACTCAATGGCCAACATCAACATGTTTCTTCCAACTAAGGCAGCCACTGTTGTGCAATCCATCTTCCAGCGATATTGATATATCGGCATTCGGCATAGCCAATATATATTAATGTAATGTATCTTGTCAAAGCTTCATAGGGTTAATGACGCCTTGAGCTTCTCTGTTCTATATCTGTCTTGTAACGATCTTTGCATATCTGCTGCATTTTTTTTTCTCTCTGATCGATGAGTAGTCCTTGGTCCGAGATTGTAGAGCCGTGTATGTTTCCTCTCGTCGTTGTGCTCTGTATGCAATCGACGGAGATGTGGTTTAACTTGTCTCACCTGCTGTGATTTCCTTTCATCTGTTCTTCAGATGTAAGAAAACGAACAGCGCCACCGCCTTTTCAAGGATTAAAAGAGTAGGATTCAGAACTTTTTTTTT
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| CDS seq | ATGGGGAGAGGGCCGGTGCAGCTGCGGCGGATCGAGAACAAGATAAACAGGCAGGTGACCTTCTCCAAGCGGAGGAACGGGCTGCTGAAGAAGGCGCACGAGATCTCCGTGCTCTGTGACGCCGACGTCGCGCTCATCGTCTTCTCCACCAAGGGCAAGCTCTACGAGTTCTCCAGCCACTCCAGTATGGAAGGGATCCTTGAACGCTACCAGCGTTACTCGTTTGATGAAAGAGCCGTACTGGAGCCAAATACTGAGGACCAGGAAAACTGGGGTGATGAATATGGAATTTTGAAGTCCAAACTGGATGCACTTCAGAAGAGCCAAAGGCAACTCTTAGGTGAACAATTGGACACACTAACAATAAAAGAACTCCAGCAATTGGAACATCAACTGGAATATTCTCTGAAGCATATAAGATCAAAAAAGAATCAGCTTCTGTTTGAATCAATTTCTGAGCTTCAGAAGAAGGAAAAGTCACTTAAAAACCAGAATAATGTTCTGCAAAAGCTCATGGAGACAGAAAAGGAGAAAAACAATGCTATAATAAACACTAACCGGGAGGAGCAAAATGGAGCAACACCAAGCACATCATCACCAACACCAGTGACGGCTCCAGATCCCATCCCGACAACAAATAACAGTCAAAGCCAACCAAGAGGATCAGGGGAGTCAGAAGCTCAACCGTCTCCGGCACAAGCAGGCAACAGCAAGCTTCCGCCATGGATGCTCCGGACAAGTCACACATGA
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| Protein seq | MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPTPVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRTSHT |
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| Function | MADS-box transcription factor 18 [UniProtKB/Swiss-Prot:Q0D4T4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g41370 | LOC_Os07g41370.1 | Chr07 | 24788476 | 24793884 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGGAGAGGGCCGGTGCAGCTGCGGCGGATCGAGAACAAGATAAACAGGCAGGTGACCTTCTCCAAGCGGAGGAACGGGCTGCTGAAGAAGGCGCACGAGATCTCCGTGCTCTGTGACGCCGACGTCGCGCTCATCGTCTTCTCCACCAAGGGCAAGCTCTACGAGTTCTCCAGCCACTCCAGTATGGAAGGGATCCTTGAACGCTACCAGCGTTACTCGTTTGATGAAAGAGCCGTACTGGAGCCAAATACTGAGGACCAGGAAAACTGGGGTGATGAATATGGAATTTTGAAGTCCAAACTGGATGCACTTCAGAAGAGCCAAAGGCAACTCTTAGGTGAACAATTGGACACACTAACAATAAAAGAACTCCAGCAATTGGAACATCAACTGGAATATTCTCTGAAGCATATAAGATCAAAAAAGAATCAGCTTCTGTTTGAATCAATTTCTGAGCTTCAGAAGAAGGAAAAGTCACTTAAAAACCAGAATAATGTTCTGCAAAAGCTCATGGAGACAGAAAAGGAGAAAAACAATGCTATAATAAACACTAACCGGGAGGAGCAAAATGGAGCAACACCAAGCACATCATCACCAACACCAGTGACGGCTCCAGATCCCATCCCGACAACAAATAACAGTCAAAGCCAACCAAGAGGATCAGGGGAGTCAGAAGCTCAACCGTCTCCGGCACAAGCAGGCAACAGCAAGCTTCCGCCATGGATGCTCCGGACAAGTCACACATGA
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| Protein seq | MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPTPVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRTSHT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g41370 | LOC_Os07g41370.2 | Chr07 | 24791165 | 24793884 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAAGGGATCCTTGAACGCTACCAGCGTTACTCGTTTGATGAAAGAGCCGTACTGGAGCCAAATACTGAGGACCAGGAAAACTGGGGTGATGAATATGGAATTTTGAAGTCCAAACTGGATGCACTTCAGAAGAGCCAAAGGCAACTCTTAGGTGAACAATTGGACACACTAACAATAAAAGAACTCCAGCAATTGGAACATCAACTGGAATATTCTCTGAAGCATATAAGATCAAAAAAGAATCAGCTTCTGTTTGAATCAATTTCTGAGCTTCAGAAGAAGGAAAAGTCACTTAAAAACCAGAATAATGTTCTGCAAAAGCTCATGGAGACAGAAAAGGAGAAAAACAATGCTATAATAAACACTAACCGGGAGGAGCAAAATGGAGCAACACCAAGCACATCATCACCAACACCAGTGACGGCTCCAGATCCCATCCCGACAACAAATAACAGTCAAAGCCAACCAAGAGGATCAGGGGAGTCAGAAGCTCAACCGTCTCCGGCACAAGCAGGCAACAGCAAGCTTCCGCCATGGATGCTCCGGACAAGTCACACATGA
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| Protein seq | MEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPTPVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRTSHT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.339410 | 2.044993 | 4.463755 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0605200 | RBH | 2.365826 | 3.613394 | 19.557249 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0605200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0022540 | RBH | 0.126149 | 10.093705 | 17.573292 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0022570 | RBH | 0.294195 | 0.000000 | 9.065523 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0022440 | RBH | 0.768597 | 6.824522 | 26.585163 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0022370 | RBH | 0.054058 | 0.043984 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022520 | RBH | 0.336076 | 0.0 | 44.181786 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0406800 | RBH | 3.4605215 | 8.893363 | 139.225891 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022980 | RBH | 0.000000 | 0.214149 | 4.938309 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0418300 | RBH | 11.7518065 | 16.996262 | 88.924248 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022260 | RBH | 0.170610 | 0.057630 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0022420 | RBH | 0.297312 | 2.547246 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022350 | RBH | 2.946536 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0022530 | RBH | 3.346299 | 1.738331 | 5.241653 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0022250 | RBH | 0.422826 | 4.551954 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022170 | RBH | 0.115064 | 1.991443 | 10.191553 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022200 | RBH | 1.223151 | 7.744407 | 21.693970 |
