Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g41220 | OGI:07068560 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:24685870-24687877 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTCATTAGATGGACTGATTAAGATCAGTGAACCTTGACCCTGAACCTGAAACAAAAGTTGAACTTTATTAAAAGCTTCAGGAGAAATCATGGCCGAGTAGGAGAAGGAGAAGGCCCATTAACCCAACGGAGTGTAGGCTAGCCCATTTGATGTTATTGGGCCTAAGGCCACGATGGAACTGTTACTAGTCCTAAGTCCACGCTTGAAATTTTGGAAAAAGTACACCCAAGGTCCCTCAACTTGTTATCGAGTTACAAAATCGTCCCCCAACTACAAAGCTAGATACCGGACGTCCCTCAACCAACAAAACCGTTCCTTTAGATCATCTGGTGGTTTTGACCCCGGTTTTGTCTAAGGTGGCGGCTGAGTCAGCGTGGAACCCACGTAGACCCCACATGTCAGAATGACAGGTCATCTCTCCCCCCTCTTCTCTCCCTTCCTCATCTCTCCCTCTCACTTCTCTCCTCTCTGCAGGGCGGCTGGCGGATGGGGAGGAGGTCCGGCAGCCGGCGGCGGCGCGTGCGACCTCGGGGTCGGACCGTCGGAGAGGCCCGGGAGGCGGCTGCGGTGGCGGCGGCGGCGGTGGCGACGACGACACGGGATAAGGGAGGCGGCGGCGGCGGCGGCGACGCTTGAGAAGGGAGAGGCGGCCGGTGGCGCCGGCGCGGGAAGAAGCTGTCTTCGGCGTCGTGCCCGCTCCGCCCTCCACCGCCTGCTTCGCCCGCCGCTGCCCCGCGCTCACACACTCCCGCGGGCGACGCCGCTGACGGCGCGGGCGTGAGAACAGCGGCCATGGACGACGACGGCGGCGACGTCCTCGCTCCCCCCGTCCCGCTCCCCGTCGGCGCCATCTTCCTCTCCCGCAGCGCGCCTGCCTGCCGCTCGTCTGCTCCGTTGGCTGGCCGCTCCCCGCGCAGTCGGCGGTGGCGAAGATGACCGTGCCGGCGTCGAGGTCGTAGCCGACGTGGATGTTCTGCTGCGCCAGGTTCCCGAGGATGGACACCGGCTGCTGCTTCGTCGTCGCCACGATTGCCAGGCACAGCGTCCCCTCCTGCACCGTCACGGACGCGTTCTCCGGCTTCAGCGCCACCGCCGCGCGGCCGCCGCTGCCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTTGTTCGGTTTGCTTCCTGTTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCCTTGCATCGCCTAACGAAGATAGAAGATCGGAGTATTATACATCAACCAATTTCTTAGCTGGGAGTGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACATAATCTATAGCGAGGTAAGAAAGCGAAACCGACGCCACAAAATATCTTGAAATTCTGCTTGTTCATATCCTGTTCTTCTGATTAAAGAACAACTTAGCTTGAGATTGTTCTGTTCACTTGCAATTTGCAGGAGTAACAAAGCTTATTTTTGCATTGATGATGCGGGAGCTCGCCGCCGATGCCACCGTCTTGTTGCCGACCTTGACGAAGTCGAGGACCACGCTGTAGTACTGTCCACGTCCCCGGCGACGAGCGTCGTGCTCGCTGCGCCGAGCTCGGTGACGTTGGCGAGGGTGCCGAAGTTGAGCGCCGACGATGTGTTGACGGAGTGCGGGACGAGGCAGCAGGAGAATCTCCGGCCGAGCGACGCCTCGCCGCCGAGCTGCGTCACGAGGGAGACCGCGTCGCCGCTGAGCCCGACCAGCCCGTCGGCCGGGAACGAGCCGGCCGTCGTGGTGGAGCAGCCGAACTTGACGCTGCACACGCCGCCTCGTGGTTGTGGGCCTCGTGGGTGGCGGCCGGCGGGGGAGCCCGCGCGCTGCTCCTACCCCCGCCGCCCCTCCACCACTGCCCGCCCGCAGGTCCTCCCCCCACTGCTGCTGCGTCGCCCGTCGCCGCCACCACCGCAGCCGCGTCGCCAT
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| CDS seq | ATGGCGACGCGGCTGCGGTGGTGGCGGCGACGGGCGACGCAGCAGCAGTGGGGGGAGGACCTGCGGGCGGGCAGTGGTGGAGGGGCGGCGGGGCTCGGCGGCGAGGCGTCGCTCGGCCGGAGATTCTCCTGCTGCCTCGTCCCGCACTCCGTCAACACATCGTCGGCGCTCAACTTCGGCACCCTCGCCAACGTCACCGAGCTCGGCGCAGCGAGCACGACGCTCGTCGCCGGGGACGTGGACAGTACTACAGCGTGGTCCTCGACTTCGTCAAGGAAGCAAACCGAACAAGCGAGTCCGGACTTGACGCTGGAGTTCGGCGGCAGCGGCGGCCGCGCGGCGGTGGCGCTGAAGCCGGAGAACGCGTCCGTGACGGTGCAGGAGGGGACGCTGTGCCTGGCAATCGTGGCGACGACGAAGCAGCAGCCGGTGTCCATCCTCGGGAACCTGGCGCAGCAGAACATCCACGTCGGCTACGACCTCGACGCCGGCACGGTCATCTTCGCCACCGCCGACTGCGCGGGGAGCGGCCAGCCAACGGAGCAGACGAGCGGCAGGCAGGCGCGCTGCGGGAGAGGAAGATGGCGCCGACGGGGAGCGGGACGGGGGGAGCGAGGACGTCGCCGCCGTCGTCGTCCATGGCCGCTGTTCTCACGCCCGCGCCGTCAGCGGCGTCGCCCGCGGGAGTGTGTTCAGGGTCAAGGTTCACTGATCTTAATCAGTCCATCTAATGAGTGA
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| Protein seq | MATRLRWWRRRATQQQWGEDLRAGSGGGAAGLGGEASLGRRFSCCLVPHSVNTSSALNFGTLANVTELGAASTTLVAGDVDSTTAWSSTSSRKQTEQASPDLTLEFGGSGGRAAVALKPENASVTVQEGTLCLAIVATTKQQPVSILGNLAQQNIHVGYDLDAGTVIFATADCAGSGQPTEQTSGRQARCGRGRWRRRGAGRGERGRRRRRRPWPLFSRPRRQRRRPRECVQGQGSLILISPSNE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g41220 | LOC_Os07g41220.1 | Chr07 | 24685870 | 24687877 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGACGCGGCTGCGGTGGTGGCGGCGACGGGCGACGCAGCAGCAGTGGGGGGAGGACCTGCGGGCGGGCAGTGGTGGAGGGGCGGCGGGGCTCGGCGGCGAGGCGTCGCTCGGCCGGAGATTCTCCTGCTGCCTCGTCCCGCACTCCGTCAACACATCGTCGGCGCTCAACTTCGGCACCCTCGCCAACGTCACCGAGCTCGGCGCAGCGAGCACGACGCTCGTCGCCGGGGACGTGGACAGTACTACAGCGTGGTCCTCGACTTCGTCAAGGAAGCAAACCGAACAAGCGAGTCCGGACTTGACGCTGGAGTTCGGCGGCAGCGGCGGCCGCGCGGCGGTGGCGCTGAAGCCGGAGAACGCGTCCGTGACGGTGCAGGAGGGGACGCTGTGCCTGGCAATCGTGGCGACGACGAAGCAGCAGCCGGTGTCCATCCTCGGGAACCTGGCGCAGCAGAACATCCACGTCGGCTACGACCTCGACGCCGGCACGGTCATCTTCGCCACCGCCGACTGCGCGGGGAGCGGCCAGCCAACGGAGCAGACGAGCGGCAGGCAGGCGCGCTGCGGGAGAGGAAGATGGCGCCGACGGGGAGCGGGACGGGGGGAGCGAGGACGTCGCCGCCGTCGTCGTCCATGGCCGCTGTTCTCACGCCCGCGCCGTCAGCGGCGTCGCCCGCGGGAGTGTGTTCAGGGTCAAGGTTCACTGATCTTAATCAGTCCATCTAATGAGTGA
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| Protein seq | MATRLRWWRRRATQQQWGEDLRAGSGGGAAGLGGEASLGRRFSCCLVPHSVNTSSALNFGTLANVTELGAASTTLVAGDVDSTTAWSSTSSRKQTEQASPDLTLEFGGSGGRAAVALKPENASVTVQEGTLCLAIVATTKQQPVSILGNLAQQNIHVGYDLDAGTVIFATADCAGSGQPTEQTSGRQARCGRGRWRRRGAGRGERGRRRRRRPWPLFSRPRRQRRRPRECVQGQGSLILISPSNE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0603500 | RBH | 0.142909 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0603500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0022400 | RBH | 0.297301 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0022430 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0022300 | RBH | 0.0 | 1.717616 | 0.340060 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0022230 | RBH | 0.0 | 0.067397 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022370 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0405100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022830 | RBH | 0.0 | 0.206251 | 0.163919 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0416600 | SBH | 1.1142845 | 3.8144515 | 1.583946 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0022270 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022200 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0022390 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017610 | SBH | 0.0 | 2.027291 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022060 | RBH | 0.858086 | 0.0 | 0.0 |
