Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g40550 | OGI:07067730 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:24292560-24298863 | ||||||||
| Gene Symbol | Orysa;CKL2 | ||||||||||
| DNA seq | TTTGATCATGAATGATTATATGGCAATGATGTGCGTCATATACATACTTGGCATGACAAAATTGGATGCGTATGTTCGTTTCAAAAGATAAGAACATGAATTAGATCTTTTACATGGTTGCTTGTGTTCCTACAAGCTAGGCAGGGCATGGCTTGCAATAGACCAATAGACAATAGTTGATTCAGGTTTAAGACTTGCAATTTCAGTGGTAACTGAAGGTTGTTGAATCCCATCAGAAGTACAAAAATATAATACGTTTTCTTTGTATCTTTTCCATTAACTGGTTGGATCATTAGTTCATCACCAGCAAGGGATACATCGATGGGATAATACGTTTTCTGTTCTACTTTTTACAGAGGTTAGCTTTACAAGAACTGCACCATTCTGTGGTGGTTATTGGTTCAGCTACACAAATAATAACTGATTGGTTCAACACAATGATCACTCGAATTAACCACTCTCGTCAGCTGTTATTCCTAGGCACAAGGTGGAGAGGAGAAAAAAAAAAACACCATTCCATTCTATGGTGTGACACAGGAGTCTTTGGGGAATCTACAACAAGCGACAAGTTATTATCTAGTAGAAGCAGCGAGGCACAGTTTTGATTTTACTATGATATGAGAATCATATAATGTTTTCAGTTGGGTCTTAATCTTATCAACAATGTTACCACCAAAGGCGAGTTTCCGGTTGACAGAAGACACCAGAAACTGACATATCCCCTTCACTGCTATATACCTAGATGCCGCTTCTCCAACGCAAAAATGGCCAGTCTTTTCCTCACTTGTATTATTTTTTTCCTGTTATCATAATAAGCAATCATCAAATGCAATTCATACATTTTTTCAGAGCAACAAATAGAACCAACAACGGGAAATGTCTTCACTTTGTCATCCTAGAACTAGAATGGTTCCAAAACGGTTGATAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTAATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCGATATGAATGTGAGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTTGTCTTATCTTTCCTCAAATTCATCTGTTATTGTAGTGCAGCTCAAATAAATTGTCAAACAATCATGAAAACATTTGTACAACTTCATATTCACATAATTCCTGATGTGGTTAAGGCTAGTAAAATGGCTAAGTAGAATTGCTTTCCAGCATACTCTAAATTGCAACACATAAAAATTCATAATATGAATTTGCATTTGAGTAAACAGACTCCTGTAGCCGACATTCCAAAAAATGCCAAATTCAAGAGAATCGGAAAAAAAAAAGGAAAGAAGAGGAAGGGAATAAAGTAGATTTTCTAAGGTACGCCAAAAGTCAAACATCAATGCAGAAAAGTATGTACTGAATATGAATCAAAATTACCTCTACTGAACCATGATTTCCGAACTACTTGCCGGATGTGGCGCTCATGTTTCTCTAATAGTTCATCAACCTTGTGTGACTGAGATAACAAAGGGCCAGAATATTCAACCCTCTCTCCTTGATCATGATCACCCTAAAGGTTTAAACAACACACTGTTTACAACTTTGCTAACACCAATGAAGCAGAAACTATCAAATATGTAAATGCTTCACCTTGATGCTGTTTTTTGACGAGAGGGTATCCCCAAGATACATTGCATTAGAAAAATTCTGAGAGTGGTAAGTGTCGTAAGAATCAAAGGAATCTGGACGTCCTAACTGTGACCATTTCTTCAGAACGGCACGCTTTGCTGCATCATGAGGCTCTCGAACTTTGGAGTTGGCACGTGCTATATGCATGTCTCTGTTAGGTTGTTCCTTCAAGCCGAGGTTCTGGTTCTCTTTAGCTGGCATCTTATTGTCCTGATCTAACTCAGCAGTAAATTGGCCCCTTGAACTAGATTTGGTCCGAGATCTAGCGAATGAACGATCTTCTGGTGGTTTTTTAGCCCAAGCAAAGCCACTAGATGATGAAACAATCAATGGTCCAGAGAAAGGGATCTCTTCTCGTGAATCATTCTTAACATGGCGAGACCTTTCTTTGACTTGGGCCACTGAAACTGGCTGTATGTCTGAAAATAACCTAGCATCACCATTTACCTTTGTACGATCCAATATTGAGTTGTCCTTGGTTCCATTTGCTTTAGTTTTGGACTCCTGAACCAAGAAAGGAAGCCAGAAGAGATTTAATGAATAATAATGGCAGCAATTAAAAATCTTCAACCAGACTGCCAAGTTGGCGCATGCCCCTGGTTGGCTCATACAAGAAAAAAAATCTACCTCTTTGCCATCAGTTTGCTTATTAACTGTAGTTGTTTCTCTTGCAGCTCTGCTGAGCCTTGATTTCCTTGATGCTTCTGGCCCATGACCTCTGCTAGCCTTTCGTCTGGAACATAAAAGCAAAAAATAAGATTATTATGCAGTGCACAAACAAGCAGTGAACTTCCGGCTATCATTTGTATTGATACCAACTTAATTATACACTGTTGGGAGCTCCTCTCTACAAAACATTTTCAAGTTATGAAAATAATACTTGAACTAAGTGATTCTAAGTTTCTAATTCCTTTCCATATTAAACAATGATTCCACATTTAACACACCCACCTGTGTGAATCTTCTCGTAATTTTGCATCCATCTCCTTGTTGGGTGCATACTTCGGCAGGCTTGAGGGATCACATGCGTAAGGCTTTGTCTTGAAAAACTGTTTCAGTACACAACAAGGTCATGCATTTTTTAGCAGTTTGATTCAATATGATCATTTAAACTTTCACAATACATACAAAAATGATTAATGACCATGTTTCATTACACATGTTATGTGTACTGTGTAGTAGTCAATTGGAAGTTTGAAAGAGTTACCATGAACATGCCAGGCCTCTGCACCTGAGTTCTTTGCTAATTCTTAGTGGTGAGACAATGGACAACAGTACAACACATTGGTACTATATGTCAGGGACAAGAGCACTTACTATAGCCCACACTAAAATGAGAACTTATAGCCAAACTAAATGCTAGTTATACTGACAATAACTTAGTAATGCTACAATAGCTTGAACATCTTCTCTACACTTGCAATTTCATAGAAGTAGGGAGTGTAGAATAGTATTACATGGTGATGCATAGCAAAATAAACTGGCAGGATATAGTTTCAGCAATAAATTTACAACGAACCAACAATAGAAAGACTGACTTCCAAATATATGACCTTTTTATCCTTAAATAATACAATACTTATATAGGATACCAGATGGTCCAATCTTACCTCAGATGTAAGAGCAGCAGATGCAGTACCACGTTTGTAGGGCTCCACTGATAGAAGAGTTTCTAGTAATCTCAATGCATTTGCTGGCATTTCTTTAAAAACATCTTGAAGGGTACTTTGATAAGGACAATGTGGTTTGAATATTGTCGCATGAGGCAACTTTGACTTCTTCCAGTACTCATCAGCAGGGGAACCACATAGCTTAAAAATCTTATGCAGTTGCTCCACCTGTAAAAACCAAGAGATGTGAGACTATATGCAGCATGATATTACTCAGGGATTTTGATAACTAGGTTATATAGGGTTGCATAACTAAAGCATAAAACAAGCTGCACTAACAGAAAATAGCCCATTGAAATTATAGCCAGAAACACTTTTATAGCATCTATGAATGCCAGCAGTTGTCAATACATTCCCCTATTTCTCATCCTCATGTTGAACATACCAGTCAAAAGATGTCCAGTACAGAATATTACGTTAATTTATAATCTCAATATCCAGTATTTAGCACTTGACATAATCATGATGCTCAAACAAGGCATCAACGGTGCCCTAACAGGCTGAAAAGTCAGCTGCTTGCAAAGAAATCAATTCATACATAAAATATACGGGAGCATGAAGTTTAAATCTCAATGGCCTTTATAGCATAATACATTTTGTTACCTATGGACTCTAGAAGTTAATACAACTCAAATAATTACCTCAGTTCTTCCCTGCAGGATAGGTTTCCCACGGAACATTTCAGCAAATACACACCCAGCACTCCACAAATCAACAGCTGCATCATAGTGAGTTGAACCTAGTAGCAGTTCAGGTGGTCGATACCACAGAGTAACGACACGGCTGGTCAGCGGATGGTTTTTGTTGGGGTCAAAGTAATTAGCAAGGCCAAAATCAGCTATTTTTAGAACCCCTTCATTATTCACAAGGAGATTGGCACCCTTGATGTCGCGATGTACAATACGACGTGAATGGCAATGCTCCAGTCCTGACAGTAACTGGTTCATGTAGCACTTGACCTGCAATAGGAGACAACCAGAGAAAAAGTCAGGTCAGCACAATGAATGCCAATCTGTTATGAAGGGATTCTCAGTAAGCACAGTTTAGTCAACAAGGACATACCTGTGCTTCACTAAACTTGATGTCAGGGGAGGAAGAAAGTCCAGCAAGATCATGCTCCATGTATTCAAATACTAGATAGAGACTGCATGATAGCCGAGAAGTAATCAAACCTTCTAGCTTCATAACATTTGGATGATCGAGCCTTCTCAATATTTGTATCTCCCTTGCCATGAATCTAACACTTTCTGGCTCAAAATTGTCAAACCGCACCTTCTTCAAGGCGACAATCTTTCCAGTATCAAGTTCCCGTGCCCTAAATACACTGCTATAGGTGCCTTGCCCAACCTACACATACAGTGCAAGAAAGAGTATTGTCAGACCCTAAGGAGAGCATACAGCTAAAGAAATTGAACTTGCATAACTAGAAAGGGAAAAAAAACTCAAACACAAAGTGTGCATAACAAGACATACAATATTTTTTTGGCAAATTCATAGCTGCATACAAGGGTGAATGGTTAGTTTACAAATTATGCATGTATCCCACTCATTCAGTGGCCATGTAAACATAAACTGGTACAATAGCAATCCTGTTCTTCTCCCAGTTAGAATTGCCCATGATGATGATCAGATAGACGAAATGATACAGCAAGATTTAATTTCCAACCAGGAAACCGTATGAACAACAGAGAAAACTAAAATTTGTGCTGCTTCAAAGGAGGAGGCACCAAACCCCCCAAATTCTCCCCTTTATCCTCTTGATAATTGCATATTAGTACTAGTTTATTCGGCATGTCATAATCCATCACCAAACAAAGTACTTCCAACTAATACGCTGCAGTATGAGATTCTTGCAAGATGCCAACCAATCCACAGAAATTTAACAAGCTTAACAGCCATCCTCCATCTAAAAATTGACACGCCTGAAAAAAATTAAAAGAATTGCAACGGAAAATGACCGACGAGCTATTGGAATTGAATCCAAGTACCTTCTCCAGCTTCTCGAAGGAGTCAGCCTTGAGAGGGATCCACCCCTGGATGGCCTCCCCGGCGACGGCGCTGAGCCACGGCGGCCACCCGGCGGCCACCTGCTCCCCCTCCAGGCTCCGGCGGAGGCTCCGCAGCCGGAAGCTCCGGGACGCGGTCGCCGCCGCGATGACGGCCTTCTCCGACGGCTCCTCCCCCGCCGCCGCCACCGCCGCCTCGTCCCTCTTCTTCTCCGACCTCCTACCCGCCGCCGCAGCCGAGGAGCAGCGCAGGGAGGACGCGGTGACGGACACCACCGTCGCCGCGGCCTCCGGCGCCCGCGGCAGGCTCCTCTCCCGCAGCGCCCCCGACGAGTCGGCCGCCGGCGTCACCGACACCGCGTTCTTCGACGCGACGCAGCCCATCGCGGCGGCGCACCACCACCACCACCACCAAAGCTCTCACTCCGCCATTGGACTCAGGTCTCCGTCTCCGTCTCCGTCTCCCTCTCCTTCGTCGTCACGGGGCAAGCCGAGCACGGCGGAGGTCAAGCACGAGCAGCAGCAGTCGACGAGATTGACCTGAAGACCAAAAATAAATGGCGCGATTTAGACGCGAGACGCCATCAGCGAAGCCGTGAAGAACACGACGCGACCACCACCACCACCACCACCGCCACCACCGGCGTCGGCAGATCGAGACGGCGACACTCTCCTCCTCCTCGTCGTCGCCAGCGAGCGCACGCGGCGGAGCCGTGATCGCGAGACACCCGTGGTGGTGGTGGTGGTGACAGCAATCGAAAAAGAAAAAAAAAACCAAAAAAAAAAGAGAGACAAAACCCACGACCTTTCAGCACGCCGGAGCGGCGGGGAGAGATGAAGAGAGCGCCACCGAATTCGGCCGGAGCGGCGGCGGCGGCGCCGGGAAGCGGGAGCTCGTCTCGTCGGAGCGTGGCCGGAGGATTTTCGCA
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| CDS seq | ATGGGCTGCGTCGCGTCGAAGAACGCGGTGTCGGTGACGCCGGCGGCCGACTCGTCGGGGGCGCTGCGGGAGAGGAGCCTGCCGCGGGCGCCGGAGGCCGCGGCGACGGTGGTGTCCGTCACCGCGTCCTCCCTGCGCTGCTCCTCGGCTGCGGCGGCGGGTAGGAGGTCGGAGAAGAAGAGGGACGAGGCGGCGGTGGCGGCGGCGGGGGAGGAGCCGTCGGAGAAGGCCGTCATCGCGGCGGCGACCGCGTCCCGGAGCTTCCGGCTGCGGAGCCTCCGCCGGAGCCTGGAGGGGGAGCAGGTGGCCGCCGGGTGGCCGCCGTGGCTCAGCGCCGTCGCCGGGGAGGCCATCCAGGGGTGGATCCCTCTCAAGGCTGACTCCTTCGAGAAGCTGGAGAAGGTTGGGCAAGGCACCTATAGCAGTGTATTTAGGGCACGGGAACTTGATACTGGAAAGATTGTCGCCTTGAAGAAGGTGCGGTTTGACAATTTTGAGCCAGAAAGTGTTAGATTCATGGCAAGGGAGATACAAATATTGAGAAGGCTCGATCATCCAAATGTTATGAAGCTAGAAGGTTTGATTACTTCTCGGCTATCATGCAGTCTCTATCTAGTATTTGAATACATGGAGCATGATCTTGCTGGACTTTCTTCCTCCCCTGACATCAAGTTTAGTGAAGCACAGGTCAAGTGCTACATGAACCAGTTACTGTCAGGACTGGAGCATTGCCATTCACGTCGTATTGTACATCGCGACATCAAGGGTGCCAATCTCCTTGTGAATAATGAAGGGGTTCTAAAAATAGCTGATTTTGGCCTTGCTAATTACTTTGACCCCAACAAAAACCATCCGCTGACCAGCCGTGTCGTTACTCTGTGGTATCGACCACCTGAACTGCTACTAGGTTCAACTCACTATGATGCAGCTGTTGATTTGTGGAGTGCTGGGTGTGTATTTGCTGAAATGTTCCGTGGGAAACCTATCCTGCAGGGAAGAACTGAGGTGGAGCAACTGCATAAGATTTTTAAGCTATGTGGTTCCCCTGCTGATGAGTACTGGAAGAAGTCAAAGTTGCCTCATGCGACAATATTCAAACCACATTGTCCTTATCAAAGTACCCTTCAAGATGTTTTTAAAGAAATGCCAGCAAATGCATTGAGATTACTAGAAACTCTTCTATCAGTGGAGCCCTACAAACGTGGTACTGCATCTGCTGCTCTTACATCTGAGTTTTTCAAGACAAAGCCTTACGCATGTGATCCCTCAAGCCTGCCGAAGTATGCACCCAACAAGGAGATGGATGCAAAATTACGAGAAGATTCACACAGACGAAAGGCTAGCAGAGGTCATGGGCCAGAAGCATCAAGGAAATCAAGGCTCAGCAGAGCTGCAAGAGAAACAACTACAGTTAATAAGCAAACTGATGGCAAAGAGGAGTCCAAAACTAAAGCAAATGGAACCAAGGACAACTCAATATTGGATCGTACAAAGGTAAATGGTGATGCTAGGTTATTTTCAGACATACAGCCAGTTTCAGTGGCCCAAGTCAAAGAAAGGTCTCGCCATGTTAAGAATGATTCACGAGAAGAGATCCCTTTCTCTGGACCATTGATTGTTTCATCATCTAGTGGCTTTGCTTGGGCTAAAAAACCACCAGAAGATCGTTCATTCGCTAGATCTCGGACCAAATCTAGTTCAAGGGGCCAATTTACTGCTGAGTTAGATCAGGACAATAAGATGCCAGCTAAAGAGAACCAGAACCTCGGCTTGAAGGAACAACCTAACAGAGACATGCATATAGCACGTGCCAACTCCAAAGTTCGAGAGCCTCATGATGCAGCAAAGCGTGCCGTTCTGAAGAAATGGTCACAGTTAGGACGTCCAGATTCCTTTGATTCTTACGACACTTACCACTCTCAGAATTTTTCTAATGCAATGTATCTTGGGGATACCCTCTCGTCAAAAAACAGCATCAAGGGTGATCATGATCAAGGAGAGAGGGTTGAATATTCTGGCCCTTTGTTATCTCAGTCACACAAGGTTGATGAACTATTAGAGAAACATGAGCGCCACATCCGGCAAGTAGTTCGGAAATCATGGTTCAGTAGAGGAAAAAAATAA
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| Protein seq | MGCVASKNAVSVTPAADSSGALRERSLPRAPEAAATVVSVTASSLRCSSAAAAGRRSEKKRDEAAVAAAGEEPSEKAVIAAATASRSFRLRSLRRSLEGEQVAAGWPPWLSAVAGEAIQGWIPLKADSFEKLEKVGQGTYSSVFRARELDTGKIVALKKVRFDNFEPESVRFMAREIQILRRLDHPNVMKLEGLITSRLSCSLYLVFEYMEHDLAGLSSSPDIKFSEAQVKCYMNQLLSGLEHCHSRRIVHRDIKGANLLVNNEGVLKIADFGLANYFDPNKNHPLTSRVVTLWYRPPELLLGSTHYDAAVDLWSAGCVFAEMFRGKPILQGRTEVEQLHKIFKLCGSPADEYWKKSKLPHATIFKPHCPYQSTLQDVFKEMPANALRLLETLLSVEPYKRGTASAALTSEFFKTKPYACDPSSLPKYAPNKEMDAKLREDSHRRKASRGHGPEASRKSRLSRAARETTTVNKQTDGKEESKTKANGTKDNSILDRTKVNGDARLFSDIQPVSVAQVKERSRHVKNDSREEIPFSGPLIVSSSSGFAWAKKPPEDRSFARSRTKSSSRGQFTAELDQDNKMPAKENQNLGLKEQPNRDMHIARANSKVREPHDAAKRAVLKKWSQLGRPDSFDSYDTYHSQNFSNAMYLGDTLSSKNSIKGDHDQGERVEYSGPLLSQSHKVDELLEKHERHIRQVVRKSWFSRGKK |
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| Function | Protein IMPAIRED IN BABA-INDUCED STERILITY 1 [UniProtKB/Swiss-Prot:F4ICB6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g40550 | LOC_Os07g40550.1 | Chr07 | 24292560 | 24298863 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGCTGCGTCGCGTCGAAGAACGCGGTGTCGGTGACGCCGGCGGCCGACTCGTCGGGGGCGCTGCGGGAGAGGAGCCTGCCGCGGGCGCCGGAGGCCGCGGCGACGGTGGTGTCCGTCACCGCGTCCTCCCTGCGCTGCTCCTCGGCTGCGGCGGCGGGTAGGAGGTCGGAGAAGAAGAGGGACGAGGCGGCGGTGGCGGCGGCGGGGGAGGAGCCGTCGGAGAAGGCCGTCATCGCGGCGGCGACCGCGTCCCGGAGCTTCCGGCTGCGGAGCCTCCGCCGGAGCCTGGAGGGGGAGCAGGTGGCCGCCGGGTGGCCGCCGTGGCTCAGCGCCGTCGCCGGGGAGGCCATCCAGGGGTGGATCCCTCTCAAGGCTGACTCCTTCGAGAAGCTGGAGAAGGTTGGGCAAGGCACCTATAGCAGTGTATTTAGGGCACGGGAACTTGATACTGGAAAGATTGTCGCCTTGAAGAAGGTGCGGTTTGACAATTTTGAGCCAGAAAGTGTTAGATTCATGGCAAGGGAGATACAAATATTGAGAAGGCTCGATCATCCAAATGTTATGAAGCTAGAAGGTTTGATTACTTCTCGGCTATCATGCAGTCTCTATCTAGTATTTGAATACATGGAGCATGATCTTGCTGGACTTTCTTCCTCCCCTGACATCAAGTTTAGTGAAGCACAGGTCAAGTGCTACATGAACCAGTTACTGTCAGGACTGGAGCATTGCCATTCACGTCGTATTGTACATCGCGACATCAAGGGTGCCAATCTCCTTGTGAATAATGAAGGGGTTCTAAAAATAGCTGATTTTGGCCTTGCTAATTACTTTGACCCCAACAAAAACCATCCGCTGACCAGCCGTGTCGTTACTCTGTGGTATCGACCACCTGAACTGCTACTAGGTTCAACTCACTATGATGCAGCTGTTGATTTGTGGAGTGCTGGGTGTGTATTTGCTGAAATGTTCCGTGGGAAACCTATCCTGCAGGGAAGAACTGAGGTGGAGCAACTGCATAAGATTTTTAAGCTATGTGGTTCCCCTGCTGATGAGTACTGGAAGAAGTCAAAGTTGCCTCATGCGACAATATTCAAACCACATTGTCCTTATCAAAGTACCCTTCAAGATGTTTTTAAAGAAATGCCAGCAAATGCATTGAGATTACTAGAAACTCTTCTATCAGTGGAGCCCTACAAACGTGGTACTGCATCTGCTGCTCTTACATCTGAGTTTTTCAAGACAAAGCCTTACGCATGTGATCCCTCAAGCCTGCCGAAGTATGCACCCAACAAGGAGATGGATGCAAAATTACGAGAAGATTCACACAGACGAAAGGCTAGCAGAGGTCATGGGCCAGAAGCATCAAGGAAATCAAGGCTCAGCAGAGCTGCAAGAGAAACAACTACAGTTAATAAGCAAACTGATGGCAAAGAGGAGTCCAAAACTAAAGCAAATGGAACCAAGGACAACTCAATATTGGATCGTACAAAGGTAAATGGTGATGCTAGGTTATTTTCAGACATACAGCCAGTTTCAGTGGCCCAAGTCAAAGAAAGGTCTCGCCATGTTAAGAATGATTCACGAGAAGAGATCCCTTTCTCTGGACCATTGATTGTTTCATCATCTAGTGGCTTTGCTTGGGCTAAAAAACCACCAGAAGATCGTTCATTCGCTAGATCTCGGACCAAATCTAGTTCAAGGGGCCAATTTACTGCTGAGTTAGATCAGGACAATAAGATGCCAGCTAAAGAGAACCAGAACCTCGGCTTGAAGGAACAACCTAACAGAGACATGCATATAGCACGTGCCAACTCCAAAGTTCGAGAGCCTCATGATGCAGCAAAGCGTGCCGTTCTGAAGAAATGGTCACAGTTAGGACGTCCAGATTCCTTTGATTCTTACGACACTTACCACTCTCAGAATTTTTCTAATGCAATGTATCTTGGGGATACCCTCTCGTCAAAAAACAGCATCAAGGGTGATCATGATCAAGGAGAGAGGGTTGAATATTCTGGCCCTTTGTTATCTCAGTCACACAAGGTTGATGAACTATTAGAGAAACATGAGCGCCACATCCGGCAAGTAGTTCGGAAATCATGGTTCAGTAGAGGAAAAAAATAA
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| Protein seq | MGCVASKNAVSVTPAADSSGALRERSLPRAPEAAATVVSVTASSLRCSSAAAAGRRSEKKRDEAAVAAAGEEPSEKAVIAAATASRSFRLRSLRRSLEGEQVAAGWPPWLSAVAGEAIQGWIPLKADSFEKLEKVGQGTYSSVFRARELDTGKIVALKKVRFDNFEPESVRFMAREIQILRRLDHPNVMKLEGLITSRLSCSLYLVFEYMEHDLAGLSSSPDIKFSEAQVKCYMNQLLSGLEHCHSRRIVHRDIKGANLLVNNEGVLKIADFGLANYFDPNKNHPLTSRVVTLWYRPPELLLGSTHYDAAVDLWSAGCVFAEMFRGKPILQGRTEVEQLHKIFKLCGSPADEYWKKSKLPHATIFKPHCPYQSTLQDVFKEMPANALRLLETLLSVEPYKRGTASAALTSEFFKTKPYACDPSSLPKYAPNKEMDAKLREDSHRRKASRGHGPEASRKSRLSRAARETTTVNKQTDGKEESKTKANGTKDNSILDRTKVNGDARLFSDIQPVSVAQVKERSRHVKNDSREEIPFSGPLIVSSSSGFAWAKKPPEDRSFARSRTKSSSRGQFTAELDQDNKMPAKENQNLGLKEQPNRDMHIARANSKVREPHDAAKRAVLKKWSQLGRPDSFDSYDTYHSQNFSNAMYLGDTLSSKNSIKGDHDQGERVEYSGPLLSQSHKVDELLEKHERHIRQVVRKSWFSRGKK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g40550 | LOC_Os07g40550.2 | Chr07 | 24292560 | 24298710 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGCTGCGTCGCGTCGAAGAACGCGGTGTCGGTGACGCCGGCGGCCGACTCGTCGGGGGCGCTGCGGGAGAGGAGCCTGCCGCGGGCGCCGGAGGCCGCGGCGACGGTGGTGTCCGTCACCGCGTCCTCCCTGCGCTGCTCCTCGGCTGCGGCGGCGGGTAGGAGGTCGGAGAAGAAGAGGGACGAGGCGGCGGTGGCGGCGGCGGGGGAGGAGCCGTCGGAGAAGGCCGTCATCGCGGCGGCGACCGCGTCCCGGAGCTTCCGGCTGCGGAGCCTCCGCCGGAGCCTGGAGGGGGAGCAGGTGGCCGCCGGGTGGCCGCCGTGGCTCAGCGCCGTCGCCGGGGAGGCCATCCAGGGGTGGATCCCTCTCAAGGCTGACTCCTTCGAGAAGCTGGAGAAGGTTGGGCAAGGCACCTATAGCAGTGTATTTAGGGCACGGGAACTTGATACTGGAAAGATTGTCGCCTTGAAGAAGGTGCGGTTTGACAATTTTGAGCCAGAAAGTGTTAGATTCATGGCAAGGGAGATACAAATATTGAGAAGGCTCGATCATCCAAATGTTATGAAGCTAGAAGGTTTGATTACTTCTCGGCTATCATGCAGTCTCTATCTAGTATTTGAATACATGGAGCATGATCTTGCTGGACTTTCTTCCTCCCCTGACATCAAGTTTAGTGAAGCACAGGTCAAGTGCTACATGAACCAGTTACTGTCAGGACTGGAGCATTGCCATTCACGTCGTATTGTACATCGCGACATCAAGGGTGCCAATCTCCTTGTGAATAATGAAGGGGTTCTAAAAATAGCTGATTTTGGCCTTGCTAATTACTTTGACCCCAACAAAAACCATCCGCTGACCAGCCGTGTCGTTACTCTGTGGTATCGACCACCTGAACTGCTACTAGGTTCAACTCACTATGATGCAGCTGTTGATTTGTGGAGTGCTGGGTGTGTATTTGCTGAAATGTTCCGTGGGAAACCTATCCTGCAGGGAAGAACTGAGGTGGAGCAACTGCATAAGATTTTTAAGCTATGTGGTTCCCCTGCTGATGAGTACTGGAAGAAGTCAAAGTTGCCTCATGCGACAATATTCAAACCACATTGTCCTTATCAAAGTACCCTTCAAGATGTTTTTAAAGAAATGCCAGCAAATGCATTGAGATTACTAGAAACTCTTCTATCAGTGGAGCCCTACAAACGTGGTACTGCATCTGCTGCTCTTACATCTGAGTTTTTCAAGACAAAGCCTTACGCATGTGATCCCTCAAGCCTGCCGAAGTATGCACCCAACAAGGAGATGGATGCAAAATTACGAGAAGATTCACACAGACGAAAGGCTAGCAGAGGTCATGGGCCAGAAGCATCAAGGAAATCAAGGCTCAGCAGAGCTGCAAGAGAAACAACTACAGTTAATAAGCAAACTGATGGCAAAGAGGAGTCCAAAACTAAAGCAAATGGAACCAAGGACAACTCAATATTGGATCGTACAAAGGTAAATGGTGATGCTAGGTTATTTTCAGACATACAGCCAGTTTCAGTGGCCCAAGTCAAAGAAAGGTCTCGCCATGTTAAGAATGATTCACGAGAAGAGATCCCTTTCTCTGGACCATTGATTGTTTCATCATCTAGTGGCTTTGCTTGGGCTAAAAAACCACCAGAAGATCGTTCATTCGCTAGATCTCGGACCAAATCTAGTTCAAGGGGCCAATTTACTGCTGAGTTAGATCAGGACAATAAGATGCCAGCTAAAGAGAACCAGAACCTCGGCTTGAAGGAACAACCTAACAGAGACATGCATATAGCACGTGCCAACTCCAAAGTTCGAGAGCCTCATGATGCAGCAAAGCGTGCCGTTCTGAAGAAATGGTCACAGTTAGGACGTCCAGATTCCTTTGATTCTTACGACACTTACCACTCTCAGAATTTTTCTAATGCAATGTATCTTGGGGATACCCTCTCGTCAAAAAACAGCATCAAGGGTGATCATGATCAAGGAGAGAGGGTTGAATATTCTGGCCCTTTGTTATCTCAGTCACACAAGGTTGATGAACTATTAGAGAAACATGAGCGCCACATCCGGCAAGTAGTTCGGAAATCATGGTTCAGTAGAGGAAAAAAATAA
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| Protein seq | MGCVASKNAVSVTPAADSSGALRERSLPRAPEAAATVVSVTASSLRCSSAAAAGRRSEKKRDEAAVAAAGEEPSEKAVIAAATASRSFRLRSLRRSLEGEQVAAGWPPWLSAVAGEAIQGWIPLKADSFEKLEKVGQGTYSSVFRARELDTGKIVALKKVRFDNFEPESVRFMAREIQILRRLDHPNVMKLEGLITSRLSCSLYLVFEYMEHDLAGLSSSPDIKFSEAQVKCYMNQLLSGLEHCHSRRIVHRDIKGANLLVNNEGVLKIADFGLANYFDPNKNHPLTSRVVTLWYRPPELLLGSTHYDAAVDLWSAGCVFAEMFRGKPILQGRTEVEQLHKIFKLCGSPADEYWKKSKLPHATIFKPHCPYQSTLQDVFKEMPANALRLLETLLSVEPYKRGTASAALTSEFFKTKPYACDPSSLPKYAPNKEMDAKLREDSHRRKASRGHGPEASRKSRLSRAARETTTVNKQTDGKEESKTKANGTKDNSILDRTKVNGDARLFSDIQPVSVAQVKERSRHVKNDSREEIPFSGPLIVSSSSGFAWAKKPPEDRSFARSRTKSSSRGQFTAELDQDNKMPAKENQNLGLKEQPNRDMHIARANSKVREPHDAAKRAVLKKWSQLGRPDSFDSYDTYHSQNFSNAMYLGDTLSSKNSIKGDHDQGERVEYSGPLLSQSHKVDELLEKHERHIRQVVRKSWFSRGKK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g40550 | LOC_Os07g40550.3 | Chr07 | 24292560 | 24298863 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAAGGGAGATACAAATATTGAGAAGGCTCGATCATCCAAATGTTATGAAGCTAGAAGGTTTGATTACTTCTCGGCTATCATGCAGTCTCTATCTAGTATTTGAATACATGGAGCATGATCTTGCTGGACTTTCTTCCTCCCCTGACATCAAGTTTAGTGAAGCACAGGTCAAGTGCTACATGAACCAGTTACTGTCAGGACTGGAGCATTGCCATTCACGTCGTATTGTACATCGCGACATCAAGGGTGCCAATCTCCTTGTGAATAATGAAGGGGTTCTAAAAATAGCTGATTTTGGCCTTGCTAATTACTTTGACCCCAACAAAAACCATCCGCTGACCAGCCGTGTCGTTACTCTGTGGTATCGACCACCTGAACTGCTACTAGGTTCAACTCACTATGATGCAGCTGTTGATTTGTGGAGTGCTGGGTGTGTATTTGCTGAAATGTTCCGTGGGAAACCTATCCTGCAGGGAAGAACTGAGGTGGAGCAACTGCATAAGATTTTTAAGCTATGTGGTTCCCCTGCTGATGAGTACTGGAAGAAGTCAAAGTTGCCTCATGCGACAATATTCAAACCACATTGTCCTTATCAAAGTACCCTTCAAGATGTTTTTAAAGAAATGCCAGCAAATGCATTGAGATTACTAGAAACTCTTCTATCAGTGGAGCCCTACAAACGTGGTACTGCATCTGCTGCTCTTACATCTGAGTTTTTCAAGACAAAGCCTTACGCATGTGATCCCTCAAGCCTGCCGAAGTATGCACCCAACAAGGAGATGGATGCAAAATTACGAGAAGATTCACACAGACGAAAGGCTAGCAGAGGTCATGGGCCAGAAGCATCAAGGAAATCAAGGCTCAGCAGAGCTGCAAGAGAAACAACTACAGTTAATAAGCAAACTGATGGCAAAGAGGAGTCCAAAACTAAAGCAAATGGAACCAAGGACAACTCAATATTGGATCGTACAAAGGTAAATGGTGATGCTAGGTTATTTTCAGACATACAGCCAGTTTCAGTGGCCCAAGTCAAAGAAAGGTCTCGCCATGTTAAGAATGATTCACGAGAAGAGATCCCTTTCTCTGGACCATTGATTGTTTCATCATCTAGTGGCTTTGCTTGGGCTAAAAAACCACCAGAAGATCGTTCATTCGCTAGATCTCGGACCAAATCTAGTTCAAGGGGCCAATTTACTGCTGAGTTAGATCAGGACAATAAGATGCCAGCTAAAGAGAACCAGAACCTCGGCTTGAAGGAACAACCTAACAGAGACATGCATATAGCACGTGCCAACTCCAAAGTTCGAGAGCCTCATGATGCAGCAAAGCGTGCCGTTCTGAAGAAATGGTCACAGTTAGGACGTCCAGATTCCTTTGATTCTTACGACACTTACCACTCTCAGAATTTTTCTAATGCAATGTATCTTGGGGATACCCTCTCGTCAAAAAACAGCATCAAGGGTGATCATGATCAAGGAGAGAGGGTTGAATATTCTGGCCCTTTGTTATCTCAGTCACACAAGGTTGATGAACTATTAGAGAAACATGAGCGCCACATCCGGCAAGTAGTTCGGAAATCATGGTTCAGTAGAGGAAAAAAATAA
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| Protein seq | MAREIQILRRLDHPNVMKLEGLITSRLSCSLYLVFEYMEHDLAGLSSSPDIKFSEAQVKCYMNQLLSGLEHCHSRRIVHRDIKGANLLVNNEGVLKIADFGLANYFDPNKNHPLTSRVVTLWYRPPELLLGSTHYDAAVDLWSAGCVFAEMFRGKPILQGRTEVEQLHKIFKLCGSPADEYWKKSKLPHATIFKPHCPYQSTLQDVFKEMPANALRLLETLLSVEPYKRGTASAALTSEFFKTKPYACDPSSLPKYAPNKEMDAKLREDSHRRKASRGHGPEASRKSRLSRAARETTTVNKQTDGKEESKTKANGTKDNSILDRTKVNGDARLFSDIQPVSVAQVKERSRHVKNDSREEIPFSGPLIVSSSSGFAWAKKPPEDRSFARSRTKSSSRGQFTAELDQDNKMPAKENQNLGLKEQPNRDMHIARANSKVREPHDAAKRAVLKKWSQLGRPDSFDSYDTYHSQNFSNAMYLGDTLSSKNSIKGDHDQGERVEYSGPLLSQSHKVDELLEKHERHIRQVVRKSWFSRGKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.997113 | 2.587910 | 1.089978 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0596600 | RBH | 6.265709 | 5.506393 | 6.010578 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47180 | SBH | 1.894042 | 2.457750 | 1.494501 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0596600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021970 | RBH | 1.372486 | 65.148018 | 6.234225 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021990 | RBH | 1.356822 | 11.415589 | 2.377375 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021860 | RBH | 2.623902 | 36.323280 | 10.624963 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0021770 | RBH | 0.507015 | 0.573142 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0021840 | RBH | 13.685152 | 17.071295 | 17.987104 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0398800 | RBH | 14.788082 | 49.1054135 | 8.9128255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022290 | RBH | 0.822002 | 2.733866 | 1.306544 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0411600 | RBH | 14.5970355 | 29.832292 | 13.1220755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021580 | RBH | 1.226479 | 0.512280 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0021740 | RBH | 1.375284 | 16.346798 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0021650 | RBH | 24.491543 | 55.250126 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0021840 | RBH | 1.913027 | 2.274272 | 0.743403 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021620 | RBH | 1.728676 | 27.673254 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021500 | RBH | 1.644289 | 2.495548 | 1.875000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021580 | RBH | 3.598275 | 38.708454 | 4.789458 |
