Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g39710 | OGI:07066370 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:23797954-23802656 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGACAAATGCGTGGTCGCAATCACATTATCCGTGTCGCGTTATCAAACAAAATAAAGAAAAACGTCTTCACTGTCGTGTTCCAAGAGTTGAGAGCAAACCAGGGCAGAACAACACTTAAGTTTTGCTTTAACAACCTAAGCAAACAGGTAAAGGATCTTTATGAAATGATGTGGAAGGATAATGGTAAACAATTTTAGTACACAGGAAATCATTCTATTTGATCACAGTGCACGCTTATTATAATTGAGAGTTGGTTGAGGAACGGTCTAAGCCCACACTCGCACAACAGATTGGAGAAACCAAAAACAACACATATGGGGGTAAACACCATCTTGTGCATGTCCTGCTAGCAATGTAGCATGCAAGATTAGTGCTCAGGCTTGCTCTGCCTTCGGGGGACCCCTCCACTTGAAGTTCTCTGCATAAGATTTGGCCTGCATGACAGAAAAACAATTGGTTAATTACAGGGAAGCTACTAACTTAATGCACAACAACCTGGACGGTATGTATTAAATTGGTCAAAAAATCTGGGAGAAGAGTGATATCCCCTTCGTCCCGCAGTATTTGTCCTTCAAATCCTTAGCAAAAAGGGTAGCAGAGATGGTTAATTACACCCTTGGCAGGATGTATGAAAGAATGCATGCACCCTGAAAAGGCTGCCAAAACAGTGGTCGCGTTGCATCCGTAAGCTTTAGGCACGTAAATTCAACTACTATGGTAGCCAGTGGTGACTAGCTTGTCCTCATCGGCTTGGTACTAACAAAAGATAGGAGTTGATGAGGATGAGGGACTCTCTGACTAGATCACATTCGATGTACTCCTACAGTTGATGCAAATTTTGGATTTTTCCCTATCAATCTTCTGACTTGCTAAGTTGTGATTAATGTGAATGCTCTATTGCTATCTACTTTCTAGAATGAAAGGAGTGCCTTTCGTTCAATTCAAAGTCACGGAGACAGAAAATTCGAAGGTCAACAAATCAGTCGAGTGCCACCATCATGTAGCAGAACACCCGTTCGATCAGGACCTCCCGTCGTCTCTCCCATTTGGGTCATTGGCATTCATTTCAACCCCTGCTCAAGTTGGTCCTTCAAACTAATCTGATTAATCCTTCCTCACACCCAATGTTAAAGCATCCCATCACATGATTCCACGTCTCCTCTTCTTGTCTTACACTTCCAAGATGGCACTCTCAACTTCCCTCCTACGTAGGCCTCCGCCCACTCCCTCAGTCTTAAAAGTATGCCACAGTTTCGTCCCTACAATCTTCTCACCAAGGGCACATTGTAATGCATTTGACATGATCTGCCCCGTCTACCATGTTTCATGTATCAGGTATGTGCTACATGCAAGCACATAAATAATAAGTATACTTATTTGCAATAAGCTACATAGCCTCATTTTATACAAAATGAGCTAATATGATTAGTATAGATGAAATTGTCTAAGTTTTTTTTTTCTATTCACTGGTGGCTTTTTCTTCACTTTGGCACTTGAACCACAATATCAACTATTTCCTGTGGGACTGTGAGGCTGTGACTACGTTATATCCACCAAAATGATGCAGACCACGTTCAACATCACATATTCCACCATCCAGAACACGGTATGTTGTTGAACAAAGTTAAAAAAGGGGCACTTAGTAGTAACTTGTAATGCATGAATTGACAAAATTATAAGGATGCAAGAATCAAAGCAACCAACTGGGTAGATATAAAAAAAATGCATCAACACAGTAAAATGGAAGATACGTAGGGAGGTGTACAGACCTTCAAAAGAGGTGTATGGCGTTTCCTAACCTGCAGGAAATAGACATTATGTGAGTAAAGAGTTCTAATTTCTTAAGAAATTTAGGAGGTGGATTCCAACAAATATAAAGGCTCGTGGTATGCCAATGAATACTGCACCATAGCCCCCCAAAAGCATTCCTACTGTCGAGAACATATTTTATACGCAAATAATATACGAGTTACAAATTGTTTGAAAAAGCTCTAGTTTGCCACAGAAATAAAATCAAAGTTCCATGTGTCCTAACTAAAATTACAAGTACAACAAAAATCGGGAACAACAGATTTACTCCTTGAGTTATACGAAGGATTTTTAGAGATTTTATTTTTCAAAATTGAAACATCGACAAGTGATTCTGAAGACAAAGATTTAAGGCAAATAACATTAAATCATATGGCACATTGGATGCAAGGCAATCTGAAAATAAAAGACCATGCACCCATAAATGGACCAAATTTCCTTCAGAAACCTGACCATCAGAATTCAGAACACTATAAAAGAACATTCCTTACTTTAACCTCTAAATTGTAAAGAATTAAGAATCAAATGATCCTATACATTCAAGAGAGAATATGCAATTAAATCCTGCTCCAATATATCCTAATATTTCAGAAATAAGTATAGCCTTATTTTTTAAACCTGATGTTAAGTATCAGGAATGGATAGACAGATAGTAAGAACTCACCACATAATCCCATCCATGCTTTTCAGCAAATGCCTTTGCTGAATCTGCACTGTCAAACGTAAGCCCTGCTTCACCAACATTAGCATATGGATCTCCAGTAGATGTCCATCCCATTAATGGGTTCTCCCACCTATTATTCACACAAATGTTAGAAGGGGAAAAAGCGGCAGCAACTGAAATAGTAATATCTAATTGTATGCTAGAATGCTATATAATAAGGAGGTGATACATAAAGCTAAATGAAGTAAATGCATGAGACATAAAAGAAATGAAATAGACTAAGTACACACTGTTTGACCAAACCAAGGTGACCACCTCAATGAGAGGTCAAATGCATCAGTTGCAAGGCTTTCATTGTACAAAAAAAAGGGGGGGTAATCTCACGTTAAAGGAAAAAAAGAAACAGACTTCAATCGTCAATGAATTCTTCTGTTATGAATGTAAATCAAGTTTTAATATGAGACTATTTGTTTTCATTTGATATATTATTGAGGCAGTTCACCAAACAGCAACACAGGGTTTGAGGTAAATAATTCATGAAAATGAATCAACAATAACCAATAAAACAAAACTGGAAACATACTTTTGGGTTGACACAAAGTTGATTTTCCACCTCCCGACTTTGCCTGAACCCTGCTGAGATGCAGTCCTAGCGGGTGAATATATTACAACCTGCAAATACACAAGGATAAGTTGATCATGTCTTCCCAGCTAGGTAGTTGAAAAGCATACAGTGAGTCTTAAAAGAACAAAAGTGGCAGCAACAAAAATCATATTTTCTTTACAGTATAAATATTTAAACCTATCTGAATAACACAATCCTGTCGTAGGCCATTTAGAAGGCCGTTTACTGTATAAACACTAAAAGGTGGGGGAGACCACTTGTTAACAGTCTAATGATCTACAAGAACATAGATCACAATCAAAATATTTTCTAGGGCTCACTCTGTATAATAAATCTGCAAAAACATAAGATCTATTGATGTGTAGGCATCCTCTCTCTGCAGACAAACATAAGGTTGATAATACCATGAAAAATGTGACTGAAGTGGTGCTATCAGCATTGGGCCATATCATAAGATGCTTCTAAGCTCTTTGAAGTTAAGACGGATCTTTGAAACAACAGAAGAATTGATCATCAAACAATATTCGTATTAACGAGATTATGTTGTAGAGAAAACTATTTCATGGAAGCTCTGTTCCTCAGAAGTCAGAACAAGAAACTACCACTCTACAAGTAGGCCTCTACATGGATTTTGAGGTAATTACAAGAACTATGAAATGGTATGAAACAGACATTAGTTCATAGTCCAACAAGTTATCTAAATTCAATAGCTAAGCATTGCTAGCAATTTCATCTTTCTTTGTATGCAGTTAGTTCTATCAAATGTATTTTTAAGTTTGATGTACACCAAGAAAATGGATAAATAATAAGCATCCTAGCATCATCTAAACTCTGGTATGTACAGTTCTCTAACACCAATACTGTCAACTCTAATCACAAACAATTTGAAAGGTAAGAACATACACCTATATACATTCAGTCATTCACAGTACATAAACCAAATCAGGATAATTTGATCAAACTCTGTTGCCTCCAGCCCTCCACTAACATAATCTAAAGTGGGAGAACCCAACCTGGAGAGCAGCACATTCCTCCCAAGTTCTAAACGCAGTTCAAACCACACAAGCGTAAAACATCATCACCAAATTCGCATTTCTATCCACTCCACGATTCGAACGTCTACTAGCGATAGCACTGTAGTCCGTACGACGAGTTCACGACCCGACGCCTCCAGGCTCTATGCCTCTATCCCTAAACACGAGTAACGACCAAAACAACCCACCAAACCTGGACATCTCGAGCGATTCCCACACGGATCCGCGAGGGCTAGCCAATCTATCGCCACTACATAAATCAGAGGTAAGGTCAGCGAAGCACCGCACCTTGCGGCGGAGGTGCTCCTCGGGGATGCCGGAGACCATGCCGATCTCGCCTGGCTTGATCTCGACGAGGGCGTCGGACGCCGCCGCGGAGAGCATCCGCGCGGGCGCGGGGGACGGCGAGAGGAGCGTGCGCCCCAGGGAGGGGAGGCTCCGCCGGAGCGGGGCGGCCATCTCGTCGGAGCCGTACGCCGGTGAGGCGGATGGTGGAGGAGAGAAGGGGCGGACGAGAAGGCCGAAGGGGAAACACCGAGAGAGAGAGAGAGAGAGCACTTCAGAACTTGG
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| CDS seq | ATGGCCGCCCCGCTCCGGCGGAGCCTCCCCTCCCTGGGGCGCACGCTCCTCTCGCCGTCCCCCGCGCCCGCGCGGATGCTCTCCGCGGCGGCGTCCGACGCCCTCGTCGAGATCAAGCCAGGCGAGATCGGCATGGTCTCCGGCATCCCCGAGGAGCACCTCCGCCGCAAGGTTGTAATATATTCACCCGCTAGGACTGCATCTCAGCAGGGTTCAGGCAAAGTCGGGAGGTGGAAAATCAACTTTGTGTCAACCCAAAAGTGGGAGAACCCATTAATGGGATGGACATCTACTGGAGATCCATATGCTAATGTTGGTGAAGCAGGGCTTACGTTTGACAGTGCAGATTCAGCAAAGGCATTTGCTGAAAAGCATGGATGGGATTATGTGGTTAGGAAACGCCATACACCTCTTTTGAAGGCCAAATCTTATGCAGAGAACTTCAAGTGGAGGGGTCCCCCGAAGGCAGAGCAAGCCTGA
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| Protein seq | MAAPLRRSLPSLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLRRKVVIYSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLTFDSADSAKAFAEKHGWDYVVRKRHTPLLKAKSYAENFKWRGPPKAEQA |
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| Function | NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [UniProtKB/Swiss-Prot:Q9FJW4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g39710 | LOC_Os07g39710.1 | Chr07 | 23797954 | 23802656 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCGCCCCGCTCCGGCGGAGCCTCCCCTCCCTGGGGCGCACGCTCCTCTCGCCGTCCCCCGCGCCCGCGCGGATGCTCTCCGCGGCGGCGTCCGACGCCCTCGTCGAGATCAAGCCAGGCGAGATCGGCATGGTCTCCGGCATCCCCGAGGAGCACCTCCGCCGCAAGGTTGTAATATATTCACCCGCTAGGACTGCATCTCAGCAGGGTTCAGGCAAAGTCGGGAGGTGGAAAATCAACTTTGTGTCAACCCAAAAGTGGGAGAACCCATTAATGGGATGGACATCTACTGGAGATCCATATGCTAATGTTGGTGAAGCAGGGCTTACGTTTGACAGTGCAGATTCAGCAAAGGCATTTGCTGAAAAGCATGGATGGGATTATGTGGTTAGGAAACGCCATACACCTCTTTTGAAGGCCAAATCTTATGCAGAGAACTTCAAGTGGAGGGGTCCCCCGAAGGCAGAGCAAGCCTGA
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| Protein seq | MAAPLRRSLPSLGRTLLSPSPAPARMLSAAASDALVEIKPGEIGMVSGIPEEHLRRKVVIYSPARTASQQGSGKVGRWKINFVSTQKWENPLMGWTSTGDPYANVGEAGLTFDSADSAKAFAEKHGWDYVVRKRHTPLLKAKSYAENFKWRGPPKAEQA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.566521 | 0.492960 | 4.889385 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0585800 | RBH | 2.626659 | 0.835910 | 21.662401 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0585800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021290 | RBH | 0.240649 | 112.030998 | 12.560934 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021310 | RBH | 0.260348 | 13.926110 | 7.725404 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021220 | RBH | 1.309174 | 50.803253 | 31.689398 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0021070 | RBH | 0.000000 | 2.542397 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0021140 | RBH | 7.622666 | 74.849876 | 46.602966 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0389300 | RBH | 15.8597505 | 50.5422345 | 42.311804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021580 | RBH | 0.299862 | 5.147122 | 3.033316 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0402300 | RBH | 21.598178 | 40.1387445 | 37.689083 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0020890 | RBH | 0.510234 | 1.183670 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0021040 | RBH | 0.742258 | 51.393429 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020940 | RBH | 11.417440 | 80.942978 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0021210 | RBH | 1.905758 | 7.154569 | 3.493778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0020900 | RBH | 0.121218 | 21.303402 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G020820 | RBH | 0.000000 | 31.657038 | 9.176765 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0020880 | RBH | 1.718954 | 43.871796 | 29.639742 |
