Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g39260 | OGI:07070760 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:23502914-23504391 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTTTTTTTTTGCCGGAATGACCAAAGGAGGTCATTCAATGTAATTAAGATTGGAAGAAAAGGTTACAGAGTTGGCTGTCGAGGAAGGAAGTGCACCAGAGCACACACCCCGAACGTGTGCCAACCGCCCAAACACACGCTACAGAGAGGGAAGCCGAGCACCGAACCGGCCGTCGCTATGCGAGACCGATCGCCACCGGGCCAATAACACCACCACAACGCGAAGACTCTAAAATGACGCCCTCACGAGGGTTGCGACGCCAAAAACTCCGTCGTCATCCGTCCCAAAAACGGGACAAGGTTTTCACCCAGAGCTCCCTGTCGAGGGATAAGGGGTACCTCAACAATGCCCTCAGGAGGGTTACCACGCCCGAAAGCGAAGTCATTATTGGCCCAAAGAAATTGGGCTAAGCTTTCGCTCGGAACCCCTTACCGCCATGGTCCGTCGCCAAATCCGAAACCACCAACTAAACATCGGCGGCACATGGCTTCCGCCACACCCGACCGACGCCCCTCCGCCGGCCGGCTTCCCGTCCTGCCAATGACAAGACTGCCACAGCACCCACCTTCGCCAGCGCGCTGACCCAGGCCGCCTCCGCCACGCTGCACGCCGGCATCCCCGTCGAATGCGGCCCAAGGGAGTCCAGACAAGGAACAACATTGCCTCGGCAACCTGAGTTTTCCTTGTAGACTGACCACCGCCTCCAGCCTGCAAAGAAGCTCCCCACAGAGAAGGGGAGGAGTTCCCCAAACAGGATTAGCCTGGCCGACCACAAGGAAGACGACCCCGCCGCCAGCGCCCTTACCCTGCCTCCACTCCCTTGCACGCTGACCCAGGCCACCTCCGCCACGCCGTCCGTCGGCCTCCATGTCGAATCCGACCTATGGGACCGGAACGGGAACAAGCTCGCTTTGGCAAACTGAGTCTTCCCTGTATGCCGGCCAACGCCTCCACCGTGCCTAAAAGCTCCCCACGAAGAAGGGGAGGAGCTCCCCAAACACAGTGAACGCCTAGCCACCCACAAGGAAGACGACCTCGCCGCCAGCGCGATCTACCCTGCCGCCAGGTTTAATGGCGGCCTCGCCGAAGCCACCGCTCCGCCGCCACCTCGCCGCCCACCAATGGCCACCCGGGCCGCCCAGCATCGCCGGTCATGCCTCCAGCCGCCCGGCCGCCTCGCCGCCTCCGGCACCGGTGTCCAGCAGCGCGGCCACCGCACCGCATCCGGCACCGGCACCACCGCTGTCGTCCAGCTGCCCGGACGTCGCACCACCTCCAGCGCCGCCGATGCCGACGCCGTGCAGCCGCAGCTGACGCGCCGCAGCCTCCGCGCTGCGCCACCTCCAGCCGCAGCCGCCGCTAGCCCGGCAGCTTCCCGGCTAGATCTGGCCTAGGGAGGCCGGATCCCGGCCGCCCTCGCCAGGATGCGCCGCCGCCGCCATCCACGAAGGCCGTCGCGCCGCCCGCACCTCTGGCC
More
|
||||||||||
| CDS seq | ATGGAGGCCGACGGACGGCGTGGCGGAGGTGGCCTGGGTCAGCGTGCAAGGGAGTGGAGGCAGGGTAAGGGCGCTGGCGGCGGGGTCGTCTTCCTTGTGGTCGGCCAGGCTAATCCTGTTTGGGGAACTCCTCCCCTTCTCTGTGGGGAGCTTCTTTGCAGGCTGGAGGCGGTGGTCAGTCTACAAGGAAAACTCAGGTTGCCGAGGCAATGTTGTTCCTTGTCTGGACTCCCTTGGGCCGCATTCGACGGGGATGCCGGCGTGCAGCGTGGCGGAGGCGGCCTGGGTCAGCGCGCTGGCGAAGGTGGGTGCTGTGGCAGTCTTGTCATTGGCAGGACGGGAAGCCGGCCGGCGGAGGGGCGTCGGTCGGGTGTGGCGGAAGCCATGTGCCGCCGATGTTTAGTTGGTGGTTTCGGATTTGGCGACGGACCATGGCGGTAA
More
|
||||||||||
| Protein seq | MEADGRRGGGGLGQRAREWRQGKGAGGGVVFLVVGQANPVWGTPPLLCGELLCRLEAVVSLQGKLRLPRQCCSLSGLPWAAFDGDAGVQRGGGGLGQRAGEGGCCGSLVIGRTGSRPAEGRRSGVAEAMCRRCLVGGFGFGDGPWR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g39260 | LOC_Os07g39260.1 | Chr07 | 23502914 | 23504391 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGCCGACGGACGGCGTGGCGGAGGTGGCCTGGGTCAGCGTGCAAGGGAGTGGAGGCAGGGTAAGGGCGCTGGCGGCGGGGTCGTCTTCCTTGTGGTCGGCCAGGCTAATCCTGTTTGGGGAACTCCTCCCCTTCTCTGTGGGGAGCTTCTTTGCAGGCTGGAGGCGGTGGTCAGTCTACAAGGAAAACTCAGGTTGCCGAGGCAATGTTGTTCCTTGTCTGGACTCCCTTGGGCCGCATTCGACGGGGATGCCGGCGTGCAGCGTGGCGGAGGCGGCCTGGGTCAGCGCGCTGGCGAAGGTGGGTGCTGTGGCAGTCTTGTCATTGGCAGGACGGGAAGCCGGCCGGCGGAGGGGCGTCGGTCGGGTGTGGCGGAAGCCATGTGCCGCCGATGTTTAGTTGGTGGTTTCGGATTTGGCGACGGACCATGGCGGTAA
More
|
|||||||
| Protein seq | MEADGRRGGGGLGQRAREWRQGKGAGGGVVFLVVGQANPVWGTPPLLCGELLCRLEAVVSLQGKLRLPRQCCSLSGLPWAAFDGDAGVQRGGGGLGQRAGEGGCCGSLVIGRTGSRPAEGRRSGVAEAMCRRCLVGGFGFGDGPWR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.207513 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0580800 | RBH | 0.0 | 0.0 | 0.813281 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0580800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026670 | RBH | 0.532144 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0020920 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020820 | RBH | 0.0 | 12.488012 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000781 | RBH | 0.123220 | 0.059993 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021230 | RBH | 0.0 | 0.0 | 0.279467 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020810 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0020540 | RBH | 0.0 | 2.571723 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G020450 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0020510 | RBH | 0.0 | 0.0 | 0.551314 |
