Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g38770 | OGI:01039680 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:23268341-23269699 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTTTTGTTGTTGTTGACCACCATATTTCTGCCAAATGTGCTCCATCAAATCTGACTTTAGACGTCGATGGGTTGTTCGATCGCGAATATTCATGTCTGCGTCTAGGACCTCTGCAAATCCATGGATTGGCCCATGGTCGAGTCCTACTAGTTGTACAGAAGATTGTGATTGCTCATATGTGTTGTCATCAGGTATGACATAATCGTCTCTCTCATCCTCAACTATCATGTTGTGCAAAATAATACATGCATACATGATATCAGCTAGTTCATCCCTTTCCCAAAGCCATGCTGGGTGGCGAATTATGGCCCAACGTTTTTGCAAAACCCCAAATGCTCGTTCCACATCTTTCCTTGCTGATTCTTGGCGTTGTGCATACAATTTAGCCTTGTCACTTTGAGGTCTAGTAATTGATTTGGCAAATGCAGCCCACTCTGGATAAATATTATCAGCTAAATAGTATCCCATGTTATATTCTGTCCCATTGACAGTAAATTGAACACTAGGAGCTCTTCCTTGTAGCACTGCAGTAAACAATGGTGACTGATCCAACACATTGATATCATTGTTTGAACCAGCAGCACCGAAAAATGCATGCCAAAACCATAGGTCAGCAGATGCAACTGCTTCAAGCATGATAGTGGGTACACCATAATCACCACGTGTGAATTGTCCCTTCCATGCAACCGGGCAATTTTGCCACTCCCAATGCATGCAGTCAAGACTACCCAACATGCCAGGGAACCCATGAGCCTCTCCTTGTTGAAGTAAACACTGGATATCTTGTTCATTAGGCTTGCGAAGGTATTGCTGACCAAATATATGTCTAACACCTTGAACAAAATTTATCATGCATTCCATTGCTGTGCTTTCTGCAACCCCAAAAGTCTCATCCATAAGGTCAGCTGGTGTACCATATGCCAACATGCGTATGGCAGCTGTGCATTTTTGCAACGGTGATAGACCAACCTTGCCAAATGCATCTCTTCGCAAACAAAAATATGGAGACCAAATGCCAAGAGCTTCAACAATGTGCAAAAATAGATGCTTTCTCATGCGAAATCTTCTACGGAACTGATCATCGGTATATAAAGGATTGTCAGAATAGTATTTTGCAAACAATCTGTTGTGGTCGTCTTGGTGATCTCTATTGATGTACCTTCGTTTGTAGCCCCCACGACGATTAGAATGACCAGCTTGTTGTGCTTGCATTTGAGCTTGAAGTTGAGCTTCAATCTCATCTTCAATCTCAGCTTCCATAGGATCATTGATTTCTTCCAAAATCAGCTCTTCAAGGTAGTCACTAGAGCTAGAATCATCTGACTCACTAGATTGATGTGGTGACTTGCTGGACAT
More
|
||||||||||
| CDS seq | ATGTCCAGCAAGTCACCACATCAATCTAGTGAGTCAGATGATTCTAGCTCTAGTGACTACCTTGAAGAGCTGATTTTGGAAGAAATCAATGATCCTATGGAAGCTGAGATTGAAGATGAGATTGAAGCTCAACTTCAAGCTCAAATGCAAGCACAACAAGCTGGTCATTCTAATCGTCGTGGGGGCTACAAACGAAGGTACATCAATAGAGATCACCAAGACGACCACAACAGATTGTTTGCAAAATACTATTCTGACAATCCTTTATATACCGATGATCAGTTCCGTAGAAGATTTCGCATGAGAAAGCATCTATTTTTGCACATTGTTGAAGCTCTTGGCATTTGGTCTCCATATTTTTGTTTGCGAAGAGATGCATTTGGCAAGGTTGGTCTATCACCGTTGCAAAAATGCACAGCTGCCATACGCATGTTGGCATATGGTACACCAGCTGACCTTATGGATGAGACTTTTGGGGTTGCAGAAAGCACAGCAATGGAATGCATGATAAATTTTGTTCAAGGTGTTAGACATATATTTGGTCAGCAATACCTTCGCAAGCCTAATGAACAAGATATCCAGTGTTTACTTCAACAAGGAGAGGCTCATGGGTTCCCTGGCATGTTGGGTAGTCTTGACTGCATGCATTGGGAGTGGCAAAATTGCCCGGTTGCATGGAAGGGACAATTCACACGTGGTGATTATGGTGTACCCACTATCATGCTTGAAGCAGTTGCATCTGCTGACCTATGGTTTTGGCATGCATTTTTCGGTGCTGCTGGTTCAAACAATGATATCAATGTGTTGGATCAGTCACCATTGTTTACTGCAGTGCTACAAGGAAGAGCTCCTAGTGTTCAATTTACTGTCAATGGGACAGAATATAACATGGGATACTATTTAGCTGATAATATTTATCCAGAGTGGGCTGCATTTGCCAAATCAATTACTAGACCTCAAAGTGACAAGGCTAAATTGTATGCACAACGCCAAGAATCAGCAAGGAAAGATGTGGAACGAGCATTTGGGGTTTTGCAAAAACGTTGGGCCATAATTCGCCACCCAGCATGGCTTTGGGAAAGGGATGAACTAGCTGATATCATGTATGCATGTATTATTTTGCACAACATGATAGTTGAGGATGAGAGAGACGATTATGTCATACCTGATGACAACACATATGAGCAATCACAATCTTCTGTACAACTAGTAGGACTCGACCATGGGCCAATCCATGGATTTGCAGAGGTCCTAGACGCAGACATGAATATTCGCGATCGAACAACCCATCGACGTCTAAAGTCAGATTTGATGGAGCACATTTGGCAGAAATATGGTGGTCAACAACAACAAAACTAG
More
|
||||||||||
| Protein seq | MSSKSPHQSSESDDSSSSDYLEELILEEINDPMEAEIEDEIEAQLQAQMQAQQAGHSNRRGGYKRRYINRDHQDDHNRLFAKYYSDNPLYTDDQFRRRFRMRKHLFLHIVEALGIWSPYFCLRRDAFGKVGLSPLQKCTAAIRMLAYGTPADLMDETFGVAESTAMECMINFVQGVRHIFGQQYLRKPNEQDIQCLLQQGEAHGFPGMLGSLDCMHWEWQNCPVAWKGQFTRGDYGVPTIMLEAVASADLWFWHAFFGAAGSNNDINVLDQSPLFTAVLQGRAPSVQFTVNGTEYNMGYYLADNIYPEWAAFAKSITRPQSDKAKLYAQRQESARKDVERAFGVLQKRWAIIRHPAWLWERDELADIMYACIILHNMIVEDERDDYVIPDDNTYEQSQSSVQLVGLDHGPIHGFAEVLDADMNIRDRTTHRRLKSDLMEHIWQKYGGQQQQN |
||||||||||
| Function | Protein ALP1-like [UniProtKB/Swiss-Prot:Q9M2U3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g38770 | LOC_Os07g38770.1 | Chr07 | 23268341 | 23269699 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCCAGCAAGTCACCACATCAATCTAGTGAGTCAGATGATTCTAGCTCTAGTGACTACCTTGAAGAGCTGATTTTGGAAGAAATCAATGATCCTATGGAAGCTGAGATTGAAGATGAGATTGAAGCTCAACTTCAAGCTCAAATGCAAGCACAACAAGCTGGTCATTCTAATCGTCGTGGGGGCTACAAACGAAGGTACATCAATAGAGATCACCAAGACGACCACAACAGATTGTTTGCAAAATACTATTCTGACAATCCTTTATATACCGATGATCAGTTCCGTAGAAGATTTCGCATGAGAAAGCATCTATTTTTGCACATTGTTGAAGCTCTTGGCATTTGGTCTCCATATTTTTGTTTGCGAAGAGATGCATTTGGCAAGGTTGGTCTATCACCGTTGCAAAAATGCACAGCTGCCATACGCATGTTGGCATATGGTACACCAGCTGACCTTATGGATGAGACTTTTGGGGTTGCAGAAAGCACAGCAATGGAATGCATGATAAATTTTGTTCAAGGTGTTAGACATATATTTGGTCAGCAATACCTTCGCAAGCCTAATGAACAAGATATCCAGTGTTTACTTCAACAAGGAGAGGCTCATGGGTTCCCTGGCATGTTGGGTAGTCTTGACTGCATGCATTGGGAGTGGCAAAATTGCCCGGTTGCATGGAAGGGACAATTCACACGTGGTGATTATGGTGTACCCACTATCATGCTTGAAGCAGTTGCATCTGCTGACCTATGGTTTTGGCATGCATTTTTCGGTGCTGCTGGTTCAAACAATGATATCAATGTGTTGGATCAGTCACCATTGTTTACTGCAGTGCTACAAGGAAGAGCTCCTAGTGTTCAATTTACTGTCAATGGGACAGAATATAACATGGGATACTATTTAGCTGATAATATTTATCCAGAGTGGGCTGCATTTGCCAAATCAATTACTAGACCTCAAAGTGACAAGGCTAAATTGTATGCACAACGCCAAGAATCAGCAAGGAAAGATGTGGAACGAGCATTTGGGGTTTTGCAAAAACGTTGGGCCATAATTCGCCACCCAGCATGGCTTTGGGAAAGGGATGAACTAGCTGATATCATGTATGCATGTATTATTTTGCACAACATGATAGTTGAGGATGAGAGAGACGATTATGTCATACCTGATGACAACACATATGAGCAATCACAATCTTCTGTACAACTAGTAGGACTCGACCATGGGCCAATCCATGGATTTGCAGAGGTCCTAGACGCAGACATGAATATTCGCGATCGAACAACCCATCGACGTCTAAAGTCAGATTTGATGGAGCACATTTGGCAGAAATATGGTGGTCAACAACAACAAAACTAG
More
|
|||||||
| Protein seq | MSSKSPHQSSESDDSSSSDYLEELILEEINDPMEAEIEDEIEAQLQAQMQAQQAGHSNRRGGYKRRYINRDHQDDHNRLFAKYYSDNPLYTDDQFRRRFRMRKHLFLHIVEALGIWSPYFCLRRDAFGKVGLSPLQKCTAAIRMLAYGTPADLMDETFGVAESTAMECMINFVQGVRHIFGQQYLRKPNEQDIQCLLQQGEAHGFPGMLGSLDCMHWEWQNCPVAWKGQFTRGDYGVPTIMLEAVASADLWFWHAFFGAAGSNNDINVLDQSPLFTAVLQGRAPSVQFTVNGTEYNMGYYLADNIYPEWAAFAKSITRPQSDKAKLYAQRQESARKDVERAFGVLQKRWAIIRHPAWLWERDELADIMYACIILHNMIVEDERDDYVIPDDNTYEQSQSSVQLVGLDHGPIHGFAEVLDADMNIRDRTTHRRLKSDLMEHIWQKYGGQQQQN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0546750 | SBH | 0.315567 | 0.0 | 0.514190 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0546750 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0435300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0366400 | SBH | 1.1791455 | 1.32507 | 5.170134 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014341 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
