Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g27120 | OGI:07044140 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:15726287-15730121 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTTCTAGGGGTTTTTATGAAAAACATCCATCCCCTACCCCCAATCCCCAAACCCTCCTCGTTCCCTCACCTCAGCGCCGCCGCCGCCGCAAGCCCCGCCGCCGCCGTCCGTCCTCCCCTCGACGTCGCCTTTCGCTCTCCCCCCGTGGTCGCCGTGCGCCATCCCCCGCCGCCGCCGTGCGTCATCTGGCGCCGGTCCCCCTTCCCCCTTCTTCGCCCTCCCCTCGCGGCGGTGGCGTAACCGGCGCCGGTTTCCCCCTCCCCTCGTGGCGGCGTCTGAGTCGGCTCCGGTGCTCCCCTCCCTCTTCCATCCCCTTTCGACGGCGTCGGGGATGACGGCAACGCGGTGGTGGTGGCGGTGTCAGGTGCGGGTAGAAAGGAGCTGGTGACGGGCGGGGACAAGGCGTCCCGATCTGCACTGACTCGATCTGCGCGAGCCAACCCCGCGCCGGATTGAATAGGGTATGAGGGGAGAGGACGGCGGCATGGGAGGATGAAGAGGACAACGCCGATGGAGAAAGGGGTGAGGTTGCCCGGCGGGGGATGCTGGCCTTCACCGACGCGTGGCTCCCCCCGCCGCGGCCGTCGTCGACCGTCCTCCACCCGTCGTCGCCACCCCCCCCCCTTCTCCCCTATCTCGGGCCTCTTCCCGACCTCATGCCTGCACGAGCGCCGGCCGCGTCCCGTGCTCCTCTCCTGGCGGCGGCGTCGGAGCCGGCGCCCGGTGCCGTCCTCCCTTCTGGATCGATGGATTTGGAGGTAGTACCGGCGGTGGCGGTGTTGGGAGGAATCTATATGAGTATTTCACTTTCATTCCTCCTCCTCTCACTCTCACTACCGATCGGGAGCGCGGAGTGGTGATGGTGGCGATGTCGGAGCGGGGGTGCTGGTCGCGTCCATGGCTCACCTCATCAGGGCACGCGCCATCCGCGCCGGCACCATCATCCGCGTCCTCGACTATCTCTTCATCGACTCCGACATCAACACAAGGTGACCATACAAATCCTTCCTGCTTTCGATCGATCTCATCTCGCTGCTATAATCATGTATCAGACCAGATGCCTGCCTGGCTGATCGATCTTTTCAAGGAGCCGCTCTTTGATCATTTTAATGTATGTGTGTGCACGTTTTGACTGCTATCGGGGAAATTTTGGTTAATTTCCTTTTTTCATTCTAACTGCTAGGTAAAATTTTATTCTGAAATGCTCTGCCGAAATTCGTTTTTTCGGAGTTCTAAACGGCGCTAGGGAAGGACTGATGAATAACAGGGCCTGCTCTTTACTGATCCAGGGCAGAAATTAAATCTAAAAAATTAACCAAAGTCTGGTCTATTTTTGTATAGTAGCAGCTCTTGTCCAGTTTATTTACATCAGGCAACATTCTAAAGTGATGAAATGCGGATGAAATCAAATGGATGATCTACTTGTTCATATTGATAAATTTAATATTACACATTATCAACCTAACAAATGATGTAGTTTAAGAAAGTTTTTAGCAAATCATTATAAGCATGGAGTAATTAATCCATGTCAATCATCCGATTAACAACCTGTTTAGAATGGAACATTGTTAGCTATTTCTTTTTGTTACTTGAAACTTTGAAAGTTTCAAGTATTACAACATGTGTCAACACTTACTGAAAATTGAATCCATAACTAACTTTTCCTATCATATCTTGGTTTCTCAGTTCAGGGTCATTATCGTCCAGCAACTTGAATTGCTGCAAACTGAGTGTGCACTGATCGGTACTAGCAATACTCATGCGAGCCCAGTAAACTTTATCTCACATGGAACCATGCATTTCCTTTCCATTGTGAGCTGTCCCCGGCATGTTGCTACTGGGTACCTGTTCTGACCGACGTGGTGGAGTGGTGATGTTGCAGAACGCGTACAACATGCTCCACAGCGACATGGTGGCGGCCGTGCGTATTGCGCACGCATGCTGTATGTTCCTCGACGAGCTCAGCACCACATACCTCTTTCCTGCCCACCACAACGTCAACGTGAGCACATTCAGATCTCCCAACTTTATAAAAGAAATTGCATCTTAATTCAAAGATAGTTTCTTGCACCTCTTCGATGCTTCATATCTGGAGATTTGGGTAGCGGAAATTGACTACAACGACCTATCTCTGATTTTGGAGTCGATACTAAATAATCAAGAGAATGGGCTTGTTTTGTTTTTTTTTTTTTTTCTAGAGTGGGATATGGAAACACCTAGCCCACCGTCTAAGATGAGATGTTGTCTAGGATAATAGTTGTAATTGGTAGATGGGATATTGCAGGGCTACGAGAGGGTAAATGATCCCTCTGTGTAATAGGGGAGGGGAGTTTATTTCTAGGGTGAACTAAACCATCCAAACAAGCAAGTGCAATTCTGAACAGAAAGTAAGGTAATTGACTGCAACATCTATCACCGAATAGATGGTGAAATGAAGATCTTAGGCTTTTTTGCCACTTGAATTGTAGTTTCTAAATACATGTCCACTGATATATCTGAACCATAGCTACTTTTCACGGACAAACTAGCTTCATATGTATGAAACATGGCAATGAAAATGTTGTTTGATTCCTGGATTCTGACCTACTGGATTTGGATGCATCATCTTTCCTTTGAAGTGTTAGCCATCATCTGCAAAAGTATTGCATTCCCAAGCTCTTTGGATGGCCCGGTGCCAAAATTGAAGAACATCATGTACTGTGTTGGAGAGTGCAAACCATTCAAGGCACCACAAAACATATCTCCTCTGTTCTTTGTAGATGTTGTATTAGGATACATGCAATCAAAGATTCAAACATCAGATTCTTTACCAGCTAAAATATCAAAAAATATTAAGACTTGGCAGTGTAGTTATCTTTTTACTAATTCTTATAGATATATGATTAGAAAAATAGAATGGTAAAAACATGGGTATTCGACACTCTCGCAGTGTACTAGACAAGTAAAAAAGGACACTAGGGAGTATAAATCAGTCAGCACATATTTCATTTTGGCACTTGATATTTGGTGCCACCTCACCTGTCATATCATGGTTTTGTTGTTTTCCACCTTACTTTCAGGACAGTGCAAATGTACCAAACAACACAGATGTTTGCATTGATGTGTACCATACCCTTCAGTTCAAAATTTCGCTTACATGATACAAGCAGATAGCAGCAGACTCCGGTCCTTCTCGTTTTTGTATTTGAGAGTATTCTGCCATAGTTCCTTTTAGGGTTGCTAACTTACTTGCCATTTTACCCCACGTTATATATGATGTATTGTTTGGCAGGAGAACGTCAATCGAGGTCATTCCAGTTCAGAAAGAAAAATACAATTTCTTTGCTATCCATTCATGAAGAATTGTACATTACAGAGTTTTAAAGTAAATTGAAAAACGATTGCACCACAAACCACTTTTTATTTAAATTTGTTGTACCTACTACATCTCATATTGTTAAATGTCAGGTCAACATACTGGGGATATATACATGACAAAAGAACAGAGCAAACTCCTTTTTTATCCAAATCATTGTTCACTGAAGTGGAGTTGTTTCTCAGAGACCTCACTAATAGGGTGAGCTTACAAGACTGATCATTGTTAGTCTTCAGCTGGAAACCAAGCAAAAGATGTCATACTGTTGTAACCATGTTTGAAGACAATTTCGTTGCCTCTTGTTTGAAGATGGCAATTGTCATAATGCGTGGTTTGTCAAAAATATGTCCACTGTGACATGCGTATATGTATTAATAATTTGTCAGTTATTTGTACCTATCTGTTTTGCCTAGATGATTATTGTAAATGCTCTTATCGCAATGTACCATCCTGTATTATTCATGTTATTACTGATATAA
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| CDS seq | ATGGTGGCGATGTCGGAGCGGGGGTGCTGGTCGCGTCCATGGCTCACCTCATCAGGGCACGCGCCATCCGCGCCGGCACCATCATCCGCGTCCTCGACTATCTCTTCATCGACTCCGACATCAACACAAGAACGCGTACAACATGCTCCACAGCGACATGGTGGCGGCCGTGCGTATTGCGCACGCATGCTGTATGTTCCTCGACGAGCTCAGCACCACATACCTCTTTCCTGCCCACCACAACGTCAACGTCAACATACTGGGGATATATACATGACAAAAGAACAGAGCAAACTCCTTTTTTATCCAAATCATTGTTCACTGAAGTGGAGTTGTTTCTCAGAGACCTCACTAATAGGGTGA |
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| Protein seq | MVAMSERGCWSRPWLTSSGHAPSAPAPSSASSTISSSTPTSTQERVQHAPQRHGGGRAYCARMLYVPRRAQHHIPLSCPPQRQRQHTGDIYMTKEQSKLLFYPNHCSLKWSCFSETSLIG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g27120 | LOC_Os07g27120.1 | Chr07 | 15726287 | 15730121 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGGCGATGTCGGAGCGGGGGTGCTGGTCGCGTCCATGGCTCACCTCATCAGGGCACGCGCCATCCGCGCCGGCACCATCATCCGCGTCCTCGACTATCTCTTCATCGACTCCGACATCAACACAAGAACGCGTACAACATGCTCCACAGCGACATGGTGGCGGCCGTGCGTATTGCGCACGCATGCTGTATGTTCCTCGACGAGCTCAGCACCACATACCTCTTTCCTGCCCACCACAACGTCAACGTCAACATACTGGGGATATATACATGACAAAAGAACAGAGCAAACTCCTTTTTTATCCAAATCATTGTTCACTGAAGTGGAGTTGTTTCTCAGAGACCTCACTAATAGGGTGA
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| Protein seq | MVAMSERGCWSRPWLTSSGHAPSAPAPSSASSTISSSTPTSTQERVQHAPQRHGGGRAYCARMLYVPRRAQHHIPLSCPPQRQRQHTGDIYMTKEQSKLLFYPNHCSLKWSCFSETSLIG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g27120 | LOC_Os07g27120.2 | Chr07 | 15726287 | 15730121 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAATGAAAATGTTGTTTGATTCCTGGATTCTGACCTACTGGATTTGGATGCATCATCTTTCCTTTGAAGTGTTAGCCATCATCTGCAAAAGTATTGCATTCCCAAGCTCTTTGGATGGCCCGGTGCCAAAATTGAAGAACATCATGTACTGTGTTGGAGAGTGCAAACCATTCAAGGCACCACAAAACATATCTCCTCTGTTCTTTGTAGATGTTGTATTAGGATACATGCAATCAAAGATTCAAACATCAGATTCTTTACCAGCTAAAATATCAAAAAATATTAAGACTTGGCAGTGTAGTTATCTTTTTACTAATTCTTATAGATATATGATTAGAAAAATAGAATGGTAA
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| Protein seq | MAMKMLFDSWILTYWIWMHHLSFEVLAIICKSIAFPSSLDGPVPKLKNIMYCVGECKPFKAPQNISPLFFVDVVLGYMQSKIQTSDSLPAKISKNIKTWQCSYLFTNSYRYMIRKIEW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g27120 | LOC_Os07g27120.3 | Chr07 | 15726336 | 15728872 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGGCCTTCACCGACGCGTGGCTCCCCCCGCCGCGGCCGTCGTCGACCGTCCTCCACCCGTCGTCGCCACCCCCCCCCCTTCTCCCCTATCTCGGGCCTCTTCCCGACCTCATGCCTGCACGAGCGCCGGCCGCGTCCCGTGCTCCTCTCCTGGCGGCGGCGTCGGAGCCGGCGCCCGGTGCCGTCCTCCCTTCTGGATCGATGGATTTGGAGGTAGTACCGGCGGTGGCGGTGTTGGGAGGAATCTATATGAGTATTTCACTTTCATTCCTCCTCCTCTCACTCTCACTACCGATCGGGAGCGCGGAGTGGTGA
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| Protein seq | MLAFTDAWLPPPRPSSTVLHPSSPPPPLLPYLGPLPDLMPARAPAASRAPLLAAASEPAPGAVLPSGSMDLEVVPAVAVLGGIYMSISLSFLLLSLSLPIGSAEW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g27120 | LOC_Os07g27120.4 | Chr07 | 15726336 | 15730121 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGGCCTTCACCGACGCGTGGCTCCCCCCGCCGCGGCCGTCGTCGACCGTCCTCCACCCGTCGTCGCCACCCCCCCCCCTTCTCCCCTATCTCGGGCCTCTTCCCGACCTCATGCCTGCACGAGCGCCGGCCGCGTCCCGTGCTCCTCTCCTGGCGGCGGCGTCGGAGCCGGCGCCCGGTGCCGTCCTCCCTTCTGGATCGATGGATTTGGAGGTAGTACCGGCGGTGGCGGTGTTGGGAGGAATCTATATGAGTATTTCACTTTCATTCCTCCTCCTCTCACTCTCACTACCGATCGGGAGCGCGGAGTGGTGA
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| Protein seq | MLAFTDAWLPPPRPSSTVLHPSSPPPPLLPYLGPLPDLMPARAPAASRAPLLAAASEPAPGAVLPSGSMDLEVVPAVAVLGGIYMSISLSFLLLSLSLPIGSAEW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g27120 | LOC_Os07g27120.5 | Chr07 | 15726341 | 15730121 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGGCCTTCACCGACGCGTGGCTCCCCCCGCCGCGGCCGTCGTCGACCGTCCTCCACCCGTCGTCGCCACCCCCCCCCCTTCTCCCCTATCTCGGGCCTCTTCCCGACCTCATGCCTGCACGAGCGCCGGCCGCGTCCCGTGCTCCTCTCCTGGCGGCGGCGTCGGAGCCGGCGCCCGGTGCCGTCCTCCCTTCTGGATCGATGGATTTGGAGGTAGTACCGGCGGTGGCGGTGTTGGGAGGAATCTATATGAGTATTTCACTTTCATTCCTCCTCCTCTCACTCTCACTACCGATCGGGAGCGCGGAGTGGTGA
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| Protein seq | MLAFTDAWLPPPRPSSTVLHPSSPPPPLLPYLGPLPDLMPARAPAASRAPLLAAASEPAPGAVLPSGSMDLEVVPAVAVLGGIYMSISLSFLLLSLSLPIGSAEW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g27120 | LOC_Os07g27120.6 | Chr07 | 15726341 | 15730121 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGGCCTTCACCGACGCGTGGCTCCCCCCGCCGCGGCCGTCGTCGACCGTCCTCCACCCGTCGTCGCCACCCCCCCCCCTTCTCCCCTATCTCGGGCCTCTTCCCGACCTCATGCCTGCACGAGCGCCGGCCGCGTCCCGTGCTCCTCTCCTGGCGGCGGCGTCGGAGCCGGCGCCCGGTGCCGTCCTCCCTTCTGGATCGATGGATTTGGAGGTAGTACCGGCGGTGGCGGTGTTGGGAGGAATCTATATGAGTATTTCACTTTCATTCCTCCTCCTCTCACTCTCACTACCGATCGGGAGCGCGGAGTGGTGA
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| Protein seq | MLAFTDAWLPPPRPSSTVLHPSSPPPPLLPYLGPLPDLMPARAPAASRAPLLAAASEPAPGAVLPSGSMDLEVVPAVAVLGGIYMSISLSFLLLSLSLPIGSAEW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.381235 | 1.248916 | 0.809096 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0013310 | RBH | 0.000000 | 1.785192 | 1.723135 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
