Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g23900 | OGI:07039120 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:13513129-13515779 | ||||||||
| Gene Symbol | OsFBX234, OsFbox369, Os_F0191 | ||||||||||
| DNA seq | AAACACAAGAGTGACTAAAAACTTTATTACTACACAGGTTACAGGTCGAAGTAATCCAAGCAAGTTCACTGACTTAAAAAGCAAACACAGCCCTATTCCGACAAGTAGCAACCCCAGTAGCAGCACGGGCCGCACAAAGCCAGCCAGCCAAAACGAAGAAACCACGTCAGGGGTAAATAGCACACAAGGGCCGAAGGGCGAGATCACTAATAAAGTTCAGCGGACACATTGATAAAATAAAATCCTGAGCAAGAAATTCTGATAGCTGACGCCTATCAACTATGCATGCAGATGATCATTAGCAAACATGACATTGGACGGGACAGTTAGCCCATTCCTGTAAGGCTCACCAAAGCAAACATGACCATCATGGATTCATGGGCGTGTTGATGCTCAATATTATATATAATCACAGAAACAACATTCTCAAAACGAACAATAAAGAATAGGGAGCCAGCTATTCAGCTTAGCATGACTTGCAGATCTCTGAACAGAAGCAACACAAGTGAATATAATTTTTGTTTCATGTACCTTAGCCCAATATAAACCAAAAAGTAACTGAAATATGCCAGACATGTTAAACCGAATACAGTTCATGGTTGATGAATTTGATACGATGACCATATTCGAACATGATGACTCGAATTGCTCATACCTACATTGCCCAACAGAAAATAAACAACTTCATAGTAGTATCTCTGGAAGATGTCAATCGCAGCAGATCCAAGACGATGGATTTGTCCATTTTGCAACATGTTACTCTTGAGCATGAGATCAAAGATCAGTGAGTCCTTGCTAGCGATAACAATGTGCCACGATCTGAAAAGACACCAAGTAGGTAAGCACACAACTCAGAACCAACTGTCCAGCTCAAAATTTACAATTTGACGAGCTATGTACTTAGAAGTAATTCCAAAGTTACTAGATTGGGTATGAGATCTGAGCTTCAGCTATGTCAGAATGTAACATAATAATTTGTAAAGAAAATCTGAAGCAAGGCAAAAGGATTAGTACTATATCAACAAGGTTCTTTAAATATTTAGCAATATCCATTTTAACCTAATAGCCATTTCATGCTTCATCAACTACATCAGCAATTCCACGAAATAACAGAGGCTGAGAAGTTAGCTTCATCTATGCCAGAAATAATAGAATTTTTTCTAGTAGGTAACATATAATATCATATCAACAAAGTTTGTATGCATAATAGCAACTGGACCAATGTATGTTCATGGTTCTTAACAGGTAAGATCTCATTAAAAACATTCAGGTTCTGATTTCCAATGCCATATATCCAGTATTCTCTCATATACACAAAACGGTCTTGGTCAATCAGTATAACAGAATAGCAGTTACATTGTGACTAAGCAAATATATAGAAGCTGTAAAGAAAATGCAGGAAAATAGACAAGCAAGGTTCAGTACACTACCAGGAGTGTAGAAGCTCATGTAGGGTAAGACACTAAAGTAGACACCAGGCTCTTCAAGCTTCTTCACCCGCCTTGACTTGAGCTCGATCGTGAATAAGCCAACGCCTGTGCTCACGAAGATGACACCCAGACCCTCTGCAGAGCCAACCACACATGCTTCATCACTGAGATCGACTACAGGTATAATTTTCTCCAGTTCGATGATCCTGCATAGTACCCATTCTGCAGCCCCTTGTGGATTCACCTTCCTCGACCACACATTAAGGCTGGATCCCTCAATGCCGGCAAACCCCAGTGAACCATTCTCCATCACCGTGAGGGCAATGTAGTACAAGTCCGATGTCGGCGGGTCAAACATAGATAAGCGGTTCTTTCCCCAGTTGTACTCGATGATCGTATTGCCGTTCCGAAGTGTGAAGTAGATTTCATCTCCGACAAGGGCACATCGCTTAGGATGGACATAAGGTGTGCGGTAGTATTCGCCTCTACTGCGGGCCGCCTGCCAACGCTCTTCCCAGGATTGATAGCCATCATCAAGAGTTGCTGGCGTGCTCCACACACCGGTCTCCGATGAATACACACTCCCCTTGACGAGTTCGTCGTCGTCGTCGGTGGCCACGAAGACCACTCGGAAGGGGCCGCCGTGGCAGTCGAGGTGGTCACAGCCGCCGACGGCGCAGAACACTGCGGCGGTGTAGATCAGCCACGGGATGCCAGATTCCGGCAGGCGGTGCTGCTCGCCCGTGACGGGGTCCCAGACGATGAGGCCGAGGTTCGACGCGTGGAGGAGGACGCGGCCATGGCGGCAGTCGAGGGCCCGGAGGAAGGCCGGGTCGGGGGAGAGGGGCGCCGCCGTGGTGCGGGCGAGGCGCGGGGCGGGGTCCCCGTCTATGACCCGGAGCCTGTGGAGGAGGCCGAGCAGCGGCGGGGATCCGTGGAAGGCGCGGTAGCGGCGGAGGAAGACGGGGTCGCAGATGGCGCGGAGCCATGCCTTGCAGACGAGTGACGCGCGGAAGAGGTGCTCGGGCTCGTCCGGCCGGAGGCGGAGGAGGATCTCGGAGACGAGCTCCGGCGGGAGCGCGGCGATGGCGTCGTCCATGAGCTCCTCTGGCGAGGTCGTCGGCGGCGGGGGCGGGTGGACGCGAGGGTTTTGGGTGGGGATAGGCCGACAAGGGGGAATTTGGGGGTTCTTCTACTTGCCTGGGTTCGAAGCTGACCAGC
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| CDS seq | ATGGACGACGCCATCGCCGCGCTCCCGCCGGAGCTCGTCTCCGAGATCCTCCTCCGCCTCCGGCCGGACGAGCCCGAGCACCTCTTCCGCGCGTCACTCGTCTGCAAGGCATGGCTCCGCGCCATCTGCGACCCCGTCTTCCTCCGCCGCTACCGCGCCTTCCACGGATCCCCGCCGCTGCTCGGCCTCCTCCACAGGCTCCGGGTCATAGACGGGGACCCCGCCCCGCGCCTCGCCCGCACCACGGCGGCGCCCCTCTCCCCCGACCCGGCCTTCCTCCGGGCCCTCGACTGCCGCCATGGCCGCGTCCTCCTCCACGCGTCGAACCTCGGCCTCATCGTCTGGGACCCCGTCACGGGCGAGCAGCACCGCCTGCCGGAATCTGGCATCCCGTGGCTGATCTACACCGCCGCAGTGTTCTGCGCCGTCGGCGGCTGTGACCACCTCGACTGCCACGGCGGCCCCTTCCGAGTGGTCTTCGTGGCCACCGACGACGACGACGAACTCGTCAAGGGGAGTGTGTATTCATCGGAGACCGGTGTGTGGAGCACGCCAGCAACTCTTGATGATGGCTATCAATCCTGGGAAGAGCGTTGGCAGGCGGCCCGCAGTAGAGGCGAATACTACCGCACACCTTATGTCCATCCTAAGCGATGTGCCCTTGTCGGAGATGAAATCTACTTCACACTTCGGAACGGCAATACGATCATCGAGTACAACTGGGGAAAGAACCGCTTATCTATGTTTGACCCGCCGACATCGGACTTGTACTACATTGCCCTCACGGTGATGGAGAATGGTTCACTGGGGTTTGCCGGCATTGAGGGATCCAGCCTTAATGTGTGGTCGAGGAAGGTGAATCCACAAGGGGCTGCAGAATGGGTACTATGCAGGATCATCGAACTGGAGAAAATTATACCTGTAGTCGATCTCAGTGATGAAGCATGTGTGGTTGGCTCTGCAGAGGGTCTGGGTGTCATCTTCGTGAGCACAGGCGTTGGCTTATTCACGATCGAGCTCAAGTCAAGGCGGGTGAAGAAGCTTGAAGAGCCTGGTGTCTACTTTAGTGTCTTACCCTACATGAGCTTCTACACTCCTGATCGTGGCACATTGTTATCGCTAGCAAGGACTCACTGA
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| Protein seq | MDDAIAALPPELVSEILLRLRPDEPEHLFRASLVCKAWLRAICDPVFLRRYRAFHGSPPLLGLLHRLRVIDGDPAPRLARTTAAPLSPDPAFLRALDCRHGRVLLHASNLGLIVWDPVTGEQHRLPESGIPWLIYTAAVFCAVGGCDHLDCHGGPFRVVFVATDDDDELVKGSVYSSETGVWSTPATLDDGYQSWEERWQAARSRGEYYRTPYVHPKRCALVGDEIYFTLRNGNTIIEYNWGKNRLSMFDPPTSDLYYIALTVMENGSLGFAGIEGSSLNVWSRKVNPQGAAEWVLCRIIELEKIIPVVDLSDEACVVGSAEGLGVIFVSTGVGLFTIELKSRRVKKLEEPGVYFSVLPYMSFYTPDRGTLLSLARTH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g23900 | LOC_Os07g23900.1 | Chr07 | 13513129 | 13515779 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACGACGCCATCGCCGCGCTCCCGCCGGAGCTCGTCTCCGAGATCCTCCTCCGCCTCCGGCCGGACGAGCCCGAGCACCTCTTCCGCGCGTCACTCGTCTGCAAGGCATGGCTCCGCGCCATCTGCGACCCCGTCTTCCTCCGCCGCTACCGCGCCTTCCACGGATCCCCGCCGCTGCTCGGCCTCCTCCACAGGCTCCGGGTCATAGACGGGGACCCCGCCCCGCGCCTCGCCCGCACCACGGCGGCGCCCCTCTCCCCCGACCCGGCCTTCCTCCGGGCCCTCGACTGCCGCCATGGCCGCGTCCTCCTCCACGCGTCGAACCTCGGCCTCATCGTCTGGGACCCCGTCACGGGCGAGCAGCACCGCCTGCCGGAATCTGGCATCCCGTGGCTGATCTACACCGCCGCAGTGTTCTGCGCCGTCGGCGGCTGTGACCACCTCGACTGCCACGGCGGCCCCTTCCGAGTGGTCTTCGTGGCCACCGACGACGACGACGAACTCGTCAAGGGGAGTGTGTATTCATCGGAGACCGGTGTGTGGAGCACGCCAGCAACTCTTGATGATGGCTATCAATCCTGGGAAGAGCGTTGGCAGGCGGCCCGCAGTAGAGGCGAATACTACCGCACACCTTATGTCCATCCTAAGCGATGTGCCCTTGTCGGAGATGAAATCTACTTCACACTTCGGAACGGCAATACGATCATCGAGTACAACTGGGGAAAGAACCGCTTATCTATGTTTGACCCGCCGACATCGGACTTGTACTACATTGCCCTCACGGTGATGGAGAATGGTTCACTGGGGTTTGCCGGCATTGAGGGATCCAGCCTTAATGTGTGGTCGAGGAAGGTGAATCCACAAGGGGCTGCAGAATGGGTACTATGCAGGATCATCGAACTGGAGAAAATTATACCTGTAGTCGATCTCAGTGATGAAGCATGTGTGGTTGGCTCTGCAGAGGGTCTGGGTGTCATCTTCGTGAGCACAGGCGTTGGCTTATTCACGATCGAGCTCAAGTCAAGGCGGGTGAAGAAGCTTGAAGAGCCTGGTGTCTACTTTAGTGTCTTACCCTACATGAGCTTCTACACTCCTGATCGTGGCACATTGTTATCGCTAGCAAGGACTCACTGA
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| Protein seq | MDDAIAALPPELVSEILLRLRPDEPEHLFRASLVCKAWLRAICDPVFLRRYRAFHGSPPLLGLLHRLRVIDGDPAPRLARTTAAPLSPDPAFLRALDCRHGRVLLHASNLGLIVWDPVTGEQHRLPESGIPWLIYTAAVFCAVGGCDHLDCHGGPFRVVFVATDDDDELVKGSVYSSETGVWSTPATLDDGYQSWEERWQAARSRGEYYRTPYVHPKRCALVGDEIYFTLRNGNTIIEYNWGKNRLSMFDPPTSDLYYIALTVMENGSLGFAGIEGSSLNVWSRKVNPQGAAEWVLCRIIELEKIIPVVDLSDEACVVGSAEGLGVIFVSTGVGLFTIELKSRRVKKLEEPGVYFSVLPYMSFYTPDRGTLLSLARTH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.485328 | 0.495289 | 0.074799 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0421000 | RBH | 0.956898 | 0.960732 | 0.387427 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0421000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012140 | RBH | 0.284395 | 1.098834 | 1.898826 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0011970 | RBH | 0.000000 | 1.605535 | 1.397120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0012060 | RBH | 0.0 | 0.000000 | 2.275251 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0011910 | RBH | 0.071171 | 0.029434 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0011910 | RBH | 2.087761 | 2.516186 | 4.790520 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0234900 | RBH | 1.778124 | 3.156749 | 2.395912 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0012400 | RBH | 0.047342 | 0.000000 | 0.322951 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0237000 | RBH | 1.154874 | 3.2524255 | 7.739723 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0011890 | RBH | 0.041340 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0011940 | RBH | 0.0 | 6.501984 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0011860 | RBH | 2.288749 | 9.442037 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0012180 | RBH | 0.183957 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0011980 | RBH | 0.058915 | 2.765508 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G011910 | RBH | 0.153681 | 0.000000 | 0.521443 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0011750 | RBH | 0.0 | 2.563292 | 0.0 |
