Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g20320 | OGI:07008200 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:11726139-11727365 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAGATTCGGATTCACCCGCTACCTGGGAGTTGAGCTTACCCCAATCGGAGGGTTATGTCATTGAGCTGCATCGGATGTTGAGGCGTCTGCGATACCCTGGTTTTCCGTCATACCGAGTGAGGCAGTGTGGCCCAGTTTGGGAGGCTCGGGTCGAGATTCACCCCCGAGTCCCTTCCAAGTTGGACTACAGCTTTCAGACACGTCACCACCGAGACCTGCCAGAGACCGCGATGCAGGATGCTGCTCGGGAGGCCTTTCTCCGACTCAGCTCTATCCACCGAGCTGAGTTAGTGAGTACCGAGTTTGCTCATCACCCGTTCCGGGAGGAGGGCAACTCAGTTTGCACAGTTCAGGACACGCCCTGCTGCTACAACCCGATAGTGACTCGGTTGTCACGATAGGCTGAGGCAGTAGATGACTACTACGAGGAGGCTTTGTTGGAGATTGACGACCACCAGAGACGTGTGGGGGAGTTAGAGACTGAGGTGACCGACCTCACAGCACAGCAGCTTCAGTTGGAGGAGGAGCACCAGGCTTGGGGCAGTGAGATAGACTCACTGAAGGCACAGCTCCAGGTCCACGGCGATCAGTTCCAGCAGTTATCCGACCAGTACAACGATCGCCGCGGGATGATGGATACTCTTGAGGAGCAGCTGAGAGAGAGTCAGGAGCACGTCAGCCAGCTGGAGGAGCAGCTTCGAGCAGCCAAGATCAGCACCACAGGGGCCTCTACTTCCACAGCAGTAGGCCGTGACCGCTACTTCTTCCTCACCCCGCCGTACCCACCGGCGTTCCACGCTCTTCTGGGAGAGGCTAGTATGCTAGCTACCGAGTCAGCGCCCTACCTAGTGGACCCTACAGCAGCACAGCCACCTGTTCCGGAGTTGGTGCACACTTCACTGATCCCTACACTTTCTCCGCAGCTGGGTTCCAGTTTGGAGACTCCGATCCAGGTCGACTCCGAGACAGAGGGGACCGACACCGAGCCAGAGATCGAGCCAGACATCACTGATCCTTCAGAGGATGAGGCTCCTGTTCCCCGTATCACCTTCCTCGGAGGCCCTCGCACCCTCAGCACTGCTCGCAAGAGCACACGACCCCCGGGCAAGAGGCCCAAGCCAGATCCAGAGGCCACTACCTCTGAGCCGTGGGGACTCCGGTTTGCGCGAGCCAGCGACCACCCTCTACCTGCCCCGGGATCCTGCGGATGGCTGGAGGATTAG
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| CDS seq | ATGGCAGATTCGGATTCACCCGCTACCTGGGAGTTGAGCTTACCCCAATCGGAGGGTTATGTCATTGAGCTGCATCGGATGTTGAGGCGTCTGCGATACCCTGGTTTTCCGTCATACCGAGTGAGGCAGTGTGGCCCAGTTTGGGAGGCTCGGGTCGAGATTCACCCCCGAGTCCCTTCCAAGTTGGACTACAGCTTTCAGACACGTCACCACCGAGACCTGCCAGAGACCGCGATGCAGGATGCTGCTCGGGAGGCCTTTCTCCGACTCAGCTCTATCCACCGAGCTGAGTTAGCTGAGGCAGTAGATGACTACTACGAGGAGGCTTTGTTGGAGATTGACGACCACCAGAGACGTGTGGGGGAGTTAGAGACTGAGGTGACCGACCTCACAGCACAGCAGCTTCAGTTGGAGGAGGAGCACCAGGCTTGGGGCAGTGAGATAGACTCACTGAAGGCACAGCTCCAGGTCCACGGCGATCAGTTCCAGCAGTTATCCGACCAGTACAACGATCGCCGCGGGATGATGGATACTCTTGAGGAGCAGCTGAGAGAGAGTCAGGAGCACGTCAGCCAGCTGGAGGAGCAGCTTCGAGCAGCCAAGATCAGCACCACAGGGGCCTCTACTTCCACAGCAGTAGGCCGTGACCGCTACTTCTTCCTCACCCCGCCGTACCCACCGGCGTTCCACGCTCTTCTGGGAGAGGCTAGTATGCTAGCTACCGAGTCAGCGCCCTACCTAGTGGACCCTACAGCAGCACAGCCACCTGTTCCGGAGTTGGTGCACACTTCACTGATCCCTACACTTTCTCCGCAGCTGGGTTCCAGTTTGGAGACTCCGATCCAGGTCGACTCCGAGACAGAGGGGACCGACACCGAGCCAGAGATCGAGCCAGACATCACTGATCCTTCAGAGGATGAGGCTCCTGTTCCCCGTATCACCTTCCTCGGAGGCCCTCGCACCCTCAGCACTGCTCGCAAGAGCACACGACCCCCGGGCAAGAGGCCCAAGCCAGATCCAGAGGCCACTACCTCTGAGCCGTGGGGACTCCGGTTTGCGCGAGCCAGCGACCACCCTCTACCTGCCCCGGGATCCTGCGGATGGCTGGAGGATTAG
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| Protein seq | MADSDSPATWELSLPQSEGYVIELHRMLRRLRYPGFPSYRVRQCGPVWEARVEIHPRVPSKLDYSFQTRHHRDLPETAMQDAAREAFLRLSSIHRAELAEAVDDYYEEALLEIDDHQRRVGELETEVTDLTAQQLQLEEEHQAWGSEIDSLKAQLQVHGDQFQQLSDQYNDRRGMMDTLEEQLRESQEHVSQLEEQLRAAKISTTGASTSTAVGRDRYFFLTPPYPPAFHALLGEASMLATESAPYLVDPTAAQPPVPELVHTSLIPTLSPQLGSSLETPIQVDSETEGTDTEPEIEPDITDPSEDEAPVPRITFLGGPRTLSTARKSTRPPGKRPKPDPEATTSEPWGLRFARASDHPLPAPGSCGWLED |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g20320 | LOC_Os07g20320.1 | Chr07 | 11726139 | 11727365 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAGATTCGGATTCACCCGCTACCTGGGAGTTGAGCTTACCCCAATCGGAGGGTTATGTCATTGAGCTGCATCGGATGTTGAGGCGTCTGCGATACCCTGGTTTTCCGTCATACCGAGTGAGGCAGTGTGGCCCAGTTTGGGAGGCTCGGGTCGAGATTCACCCCCGAGTCCCTTCCAAGTTGGACTACAGCTTTCAGACACGTCACCACCGAGACCTGCCAGAGACCGCGATGCAGGATGCTGCTCGGGAGGCCTTTCTCCGACTCAGCTCTATCCACCGAGCTGAGTTAGCTGAGGCAGTAGATGACTACTACGAGGAGGCTTTGTTGGAGATTGACGACCACCAGAGACGTGTGGGGGAGTTAGAGACTGAGGTGACCGACCTCACAGCACAGCAGCTTCAGTTGGAGGAGGAGCACCAGGCTTGGGGCAGTGAGATAGACTCACTGAAGGCACAGCTCCAGGTCCACGGCGATCAGTTCCAGCAGTTATCCGACCAGTACAACGATCGCCGCGGGATGATGGATACTCTTGAGGAGCAGCTGAGAGAGAGTCAGGAGCACGTCAGCCAGCTGGAGGAGCAGCTTCGAGCAGCCAAGATCAGCACCACAGGGGCCTCTACTTCCACAGCAGTAGGCCGTGACCGCTACTTCTTCCTCACCCCGCCGTACCCACCGGCGTTCCACGCTCTTCTGGGAGAGGCTAGTATGCTAGCTACCGAGTCAGCGCCCTACCTAGTGGACCCTACAGCAGCACAGCCACCTGTTCCGGAGTTGGTGCACACTTCACTGATCCCTACACTTTCTCCGCAGCTGGGTTCCAGTTTGGAGACTCCGATCCAGGTCGACTCCGAGACAGAGGGGACCGACACCGAGCCAGAGATCGAGCCAGACATCACTGATCCTTCAGAGGATGAGGCTCCTGTTCCCCGTATCACCTTCCTCGGAGGCCCTCGCACCCTCAGCACTGCTCGCAAGAGCACACGACCCCCGGGCAAGAGGCCCAAGCCAGATCCAGAGGCCACTACCTCTGAGCCGTGGGGACTCCGGTTTGCGCGAGCCAGCGACCACCCTCTACCTGCCCCGGGATCCTGCGGATGGCTGGAGGATTAG
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| Protein seq | MADSDSPATWELSLPQSEGYVIELHRMLRRLRYPGFPSYRVRQCGPVWEARVEIHPRVPSKLDYSFQTRHHRDLPETAMQDAAREAFLRLSSIHRAELAEAVDDYYEEALLEIDDHQRRVGELETEVTDLTAQQLQLEEEHQAWGSEIDSLKAQLQVHGDQFQQLSDQYNDRRGMMDTLEEQLRESQEHVSQLEEQLRAAKISTTGASTSTAVGRDRYFFLTPPYPPAFHALLGEASMLATESAPYLVDPTAAQPPVPELVHTSLIPTLSPQLGSSLETPIQVDSETEGTDTEPEIEPDITDPSEDEAPVPRITFLGGPRTLSTARKSTRPPGKRPKPDPEATTSEPWGLRFARASDHPLPAPGSCGWLED
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.150894 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0298700 | RBH | 0.000000 | 0.198527 | 0.812865 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g26230 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0298700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005770 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0042200 | SBH | 0.0250185 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0270700 | RBH | 0.014345 | 0.3142795 | 0.123023 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
