Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g18540 | OGI:07031890 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:10970461-10972891 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTCATACCTCCGCGCATTTTTAATAACCTTATCTGGGCGAGACTGTAAATATGAAGAAGAAACCATTTTAAAGTGGTTGCTAATAGGTTATTCCCAACCCATGATATTATTCATAGTTTCCATAAACTCTACATCATCAAGAAACTAGTAATAGACACTACTCTTCCAATGCAAACACCATTATTCCATACTTCAATTTAATACTACTTATCTCACATGATGTCTTAGATATTGTGTACAAAGCATGTCTCATGCAAGACATGGTTTTCTTCTCTTTCCTCATTTATTCACTTGTCACATCATTTTTCATCCTAGGTGATAGCTTATTTAATGCTATGGACACTATCCTAGTCATTGGGTTGGGAATGGCCTAACTACAATAGTTGGCAATGCAATAATTGGGAAGGTTATAATCAATCTAGTGTAAAATCAAAGGTGTTTTTGATTATTATTCTGTGATGAACAATTGGCATTGGAGATTATTGGTTTTGTTATTTGGAATTTATTCACGAAGTGGTTTTGGAGATGATTGGATTTCACAAGTGAATCTACAGGATACTGCTGTTATTTTATGTGGACCGGTCAGACCGGGTAGGTGTTGCCGGTCAGACCGGTGTGTATTGCGTGGTCAGACCGGCGCAGCCCACGGTCTGACCGGCCGACGCTGTGTCGGTTTCGGTTTCGGGTTGTTTATTTGGATATCCGTGATTGTTTCATGATTATGGCTTCTAGATGGATACTATACGTATGTAATACTGTTGTTTGCTACTAATGAGTCAAGTTGGAGATAGCTTGGTTTCGGAATATGGTTTCTTTGTTTATTTCATGTGTAGGTGACTCGATGCCTCGGGAGAGTATTTGCGGTGATGGACCGGGAGTCGGCTTGGGGATAAGATGACGTCCGTGGTGGTCAGAGATCATGCGGGATACTTAGGCTAGAGTTGATACACGTGGTTAATGGAGATTCCATATGGCTTACGATGGAGTTATTGTGTGCGTATGGGATGCGGAGTCGAATTTGGAAGAAGTCCAAATTTGGTACGATTGGTTATGTAAAATTTCTTTCTTGTACTAGAGGGTTTCCTAAGGTGTTTAGGACTCCTAGTATGAATTTGGTTCGTGGCTTTAGGCTGCCTACCTCAGGTATAAATAGAGGGGGAGTGTGAGGCTTCCCGGTATCGCTTTTGTATCGCTTTTGAGAGCAATTGAGTTGAGTTTTGAGTTAGGGTTTCGAGTTTAGTCGAAATTTTTTAAGGAGTGTTGTTGGTGCACTTTGTAAACACAGAGAGAAGTAATAAAGTCGTCATCCACTTTAAGAGTTCTTTGATTTGTGTTTCATCGGGTTTCGGCGGTCTAACCGACAACTCACCGGCGGTTGGACCGACGGCAAGCGGCGGTCAGACTGGCGGGAGCACGGCGGTCAGACCGGCGGCGGCGACAGGTGCGGCAGGCAACATCGGCGGTCAGACCGGCGGCATCCACACGGTCAGACCGGCAGATCAATCTCGGTCAGACCGATCTCCGTCAAATTCGAGGGTAACTTTTATATCCGCTAAAAGTTTTCGGTCTTTGGGGATACCAACCATTCACCCCCCTTTTGGTTGGCTTAGTTATTGCTATTCGATCCTACATCTAGTGAGCGAAACAAAAAGGGAAATACTCACAGTGATATACAGCGTCTCCAAGCATGGGACACATTTGAGGAAATCAACAACTGCATCCAGATTAGGGCCATCAGAGACAAGAGCCAAAACCTTCACTGTTGGCATTGAGCTTGGCATGTTGACAGCAGTCGTTTTCTGGCAAAAGAAGAAGAAGAAATAACAAGGCATAGATATCAAGAATAATAGCCAGCACATAGCAATGATGAATCGTCATTAACGAATTGGTTTGCTGCTACCGGAAAATATGTTGTTCCAAGGTGGAGTTCAGATATGCCATCAGAAATCCAACCCAATGCCTCCATTTTAGGCGCTGCAATCACCCGGATGGTCGCTGGACCATTATTCAGATAAGGTGTAAGCAATCTCTGGAGGCAAGGGGCATCCACGATGACCACCTCCTGCAACCTGCCATCATCTCGTGCATTCCACGAATAACAGAGGCCCAAGCTCCTGAGAGTTTGGGAGGCGATGCGGAGGCGACGAACGCCGAAGCTCTTCCCCTCTAGCAGAAGGCTCTCCAATGCAGGGCAGCATGAGAGCACGCCATGGATGGCGTCCTCGGAGATGCTGACGTCGGACAGCGTGATCTGCTTGAGGCGAGGGAAATGCGGCCGCGGTGCCATTCCGCTGGGGAAATCGCACCAACCGAGCTTGACCACGCGGAGGGTGGGCGCGAACCGCAGCGCGGGCAGCGGCAGCGGGTGCGGCTGCGCCACGCCGTCGAGGGCGGTGAGGGCGCCGGAGCGGAGCCAGCCGTCAGCCAT
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| CDS seq | ATGGCTGACGGCTGGCTCCGCTCCGGCGCCCTCACCGCCCTCGACGGCGTGGCGCAGCCGCACCCGCTGCCGCTGCCCGCGCTGCGGTTCGCGCCCACCCTCCGCGTGGTCAAGCTCGGTTGGTGCGATTTCCCCAGCGGAATGGCACCGCGGCCGCATTTCCCTCGCCTCAAGCAGATCACGCTGTCCGACGTCAGCATCTCCGAGGACGCCATCCATGGCGTGCTCTCATGCTGCCCTGCATTGGAGAGCCTTCTGCTAGAGGGGAAGAGCTTCGGCGTTCGTCGCCTCCGCATCGCCTCCCAAACTCTCAGGAGCTTGGGCCTCTGTTATTCGTGGAATGCACGAGATGATGGCAGGTTGCAGGAGGTGGTCATCGTGGATGCCCCTTGCCTCCAGAGATTGCTTACACCTTATCTGAATAATGGTCCAGCGACCATCCGGGTGATTGCAGCGCCTAAAATGGAGGCATTGGGTTGGATTTCTGATGGCATATCTGAACTCCACCTTGGAACAACATATTTTCCGAAAACGACTGCTGTCAACATGCCAAGCTCAATGCCAACAGTGAAGGTTTTGGCTCTTGTCTCTGATGGCCCTAATCTGGATGCAGTTGTTGATTTCCTCAAATGTGTCCCATGCTTGGAGACGCTGTATATCACTTCTCGCCCAGATAAGGTTATTAAAAATGCGCGGAGGTATGAGTGA
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| Protein seq | MADGWLRSGALTALDGVAQPHPLPLPALRFAPTLRVVKLGWCDFPSGMAPRPHFPRLKQITLSDVSISEDAIHGVLSCCPALESLLLEGKSFGVRRLRIASQTLRSLGLCYSWNARDDGRLQEVVIVDAPCLQRLLTPYLNNGPATIRVIAAPKMEALGWISDGISELHLGTTYFPKTTAVNMPSSMPTVKVLALVSDGPNLDAVVDFLKCVPCLETLYITSRPDKVIKNARRYE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g18540 | LOC_Os07g18540.1 | Chr07 | 10970461 | 10972891 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGACGGCTGGCTCCGCTCCGGCGCCCTCACCGCCCTCGACGGCGTGGCGCAGCCGCACCCGCTGCCGCTGCCCGCGCTGCGGTTCGCGCCCACCCTCCGCGTGGTCAAGCTCGGTTGGTGCGATTTCCCCAGCGGAATGGCACCGCGGCCGCATTTCCCTCGCCTCAAGCAGATCACGCTGTCCGACGTCAGCATCTCCGAGGACGCCATCCATGGCGTGCTCTCATGCTGCCCTGCATTGGAGAGCCTTCTGCTAGAGGGGAAGAGCTTCGGCGTTCGTCGCCTCCGCATCGCCTCCCAAACTCTCAGGAGCTTGGGCCTCTGTTATTCGTGGAATGCACGAGATGATGGCAGGTTGCAGGAGGTGGTCATCGTGGATGCCCCTTGCCTCCAGAGATTGCTTACACCTTATCTGAATAATGGTCCAGCGACCATCCGGGTGATTGCAGCGCCTAAAATGGAGGCATTGGGTTGGATTTCTGATGGCATATCTGAACTCCACCTTGGAACAACATATTTTCCGAAAACGACTGCTGTCAACATGCCAAGCTCAATGCCAACAGTGAAGGTTTTGGCTCTTGTCTCTGATGGCCCTAATCTGGATGCAGTTGTTGATTTCCTCAAATGTGTCCCATGCTTGGAGACGCTGTATATCACTTCTCGCCCAGATAAGGTTATTAAAAATGCGCGGAGGTATGAGTGA
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| Protein seq | MADGWLRSGALTALDGVAQPHPLPLPALRFAPTLRVVKLGWCDFPSGMAPRPHFPRLKQITLSDVSISEDAIHGVLSCCPALESLLLEGKSFGVRRLRIASQTLRSLGLCYSWNARDDGRLQEVVIVDAPCLQRLLTPYLNNGPATIRVIAAPKMEALGWISDGISELHLGTTYFPKTTAVNMPSSMPTVKVLALVSDGPNLDAVVDFLKCVPCLETLYITSRPDKVIKNARRYE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0285450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0285450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010550 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010550 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0010360 | SBH | 0.0 | 0.023223 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010500 | RBH | 0.0 | 0.0 | 0.259812 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0193700 | SBH | 0.49111 | 1.706083 | 0.574854 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0194200 | SBH | 0.7138145 | 1.3182035 | 4.441954 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010440 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010710 | RBH | 0.0 | 0.0 | 0.508189 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010500 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0010260 | RBH | 0.0 | 0.000000 | 0.0 |
