Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g12780 | OGI:07020430 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:7313552-7314747 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGCCTCTCCTAATCCCCCTCTCTCCCTCGAAACCCTAATCCCCCTCTTGCGATTTTCGCGAAACCCTAATCCCCCTCTCGCGATTCGCGATTCCCTCTCCCTCCGCCATGGCCGCCGCCGCCACCACCACCGTGGAGGTCTCGGACGACGGCGACCACCCCGTCCTCCGCGACGACGAGCGGGGGATCCCTCGATCCCTCTCCCTCCTCGCCGCGATCGTGGAGGCCGACGCCGCCCGCCACGCCGCCGCCGCCACACGGCCCGCCGAGTCCGACCTCGTCCGCGCCTTCCGCGGCGGCGCGACGCCCACCGTCGCGATCGGGGAGTTCCTGGAGCGGATCCACGCCTTCGTCCGGCTGGAGAGCGTCCGCCACGACATCCGGCTCCAGGCCACGTGCTACGTCCTCGCCGGGATCTACCTCACCCGGTTCTTGGGGAGCGCCGCCGCGGTGGAGGCCGGGATCCGCGTCGACCCGTCCACGGCGCACCGCCTCGTCGCCGCAGCGGTCTTCGTGGGCGCCAAGTTCGGGAACACCAGCGACATGCTCCCGACGAGGTGGACCTCCGTGTTCGAGACGAGCTCCGACGCGGCGATCCACGCGGGGGAGATGGCCGGGCTCGAGCGGCGCTTCCTGCGCGCCGTGGACTACCGCCTGTTCGTCCGCAGCGACAGGTTCGGGTGGTTCTGCGGCGCCATGGAGCAGGCGCTGCATCGGAGCGTGAGCCGCAGCAGGAAGAGGACGGCGGCGGAAGCAGTGGGGGGAGAAGAAGGGGAGGACGAGCGCCGCCGCCGCCGCCGCCACAGCATCGTCGGGGCTTTCCTGCCGCCGCTCCCAGCCGTCGCCGCCAATTAGGTTCACCATTTCTGAATTCAGCTTCAAATATTTTACTACAGATTGTATTTTCTTTTGCTGCTTCTTGTGTTTAGAGTTGTTTGCAGGTCATCGGGGTGGAGAAGACGACGGACGGCCGGCCGGAGTTGGAGTTGGATCGGCTAGAGCTCGCCGCCGTTGGCCGGAGTAGTTTTACAGAGTTTTAGCCATAGGATGTTTATAATTATATATATTGAGCAACTGTTAGCTTTGTCAGAGTTTAACTGTCAGATTATATCGATCAATCAGTAATAGATTTCCAATGTAATCCTATAACCAACTATATAAATATAAATAATAAAAAAAGTAACTTTCTGCTATTC
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| CDS seq | ATGGCCGCCGCCGCCACCACCACCGTGGAGGTCTCGGACGACGGCGACCACCCCGTCCTCCGCGACGACGAGCGGGGGATCCCTCGATCCCTCTCCCTCCTCGCCGCGATCGTGGAGGCCGACGCCGCCCGCCACGCCGCCGCCGCCACACGGCCCGCCGAGTCCGACCTCGTCCGCGCCTTCCGCGGCGGCGCGACGCCCACCGTCGCGATCGGGGAGTTCCTGGAGCGGATCCACGCCTTCGTCCGGCTGGAGAGCGTCCGCCACGACATCCGGCTCCAGGCCACGTGCTACGTCCTCGCCGGGATCTACCTCACCCGGTTCTTGGGGAGCGCCGCCGCGGTGGAGGCCGGGATCCGCGTCGACCCGTCCACGGCGCACCGCCTCGTCGCCGCAGCGGTCTTCGTGGGCGCCAAGTTCGGGAACACCAGCGACATGCTCCCGACGAGGTGGACCTCCGTGTTCGAGACGAGCTCCGACGCGGCGATCCACGCGGGGGAGATGGCCGGGCTCGAGCGGCGCTTCCTGCGCGCCGTGGACTACCGCCTGTTCGTCCGCAGCGACAGGTTCGGGTGGTTCTGCGGCGCCATGGAGCAGGCGCTGCATCGGAGCGTGAGCCGCAGCAGGAAGAGGACGGCGGCGGAAGCAGTGGGGGGAGAAGAAGGGGAGGACGAGCGCCGCCGCCGCCGCCGCCACAGCATCGTCGGGGCTTTCCTGCCGCCGCTCCCAGCCGTCGCCGCCAATTAG
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| Protein seq | MAAAATTTVEVSDDGDHPVLRDDERGIPRSLSLLAAIVEADAARHAAAATRPAESDLVRAFRGGATPTVAIGEFLERIHAFVRLESVRHDIRLQATCYVLAGIYLTRFLGSAAAVEAGIRVDPSTAHRLVAAAVFVGAKFGNTSDMLPTRWTSVFETSSDAAIHAGEMAGLERRFLRAVDYRLFVRSDRFGWFCGAMEQALHRSVSRSRKRTAAEAVGGEEGEDERRRRRRHSIVGAFLPPLPAVAAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g12780 | LOC_Os07g12780.1 | Chr07 | 7313552 | 7314747 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGCCGCCGCCACCACCACCGTGGAGGTCTCGGACGACGGCGACCACCCCGTCCTCCGCGACGACGAGCGGGGGATCCCTCGATCCCTCTCCCTCCTCGCCGCGATCGTGGAGGCCGACGCCGCCCGCCACGCCGCCGCCGCCACACGGCCCGCCGAGTCCGACCTCGTCCGCGCCTTCCGCGGCGGCGCGACGCCCACCGTCGCGATCGGGGAGTTCCTGGAGCGGATCCACGCCTTCGTCCGGCTGGAGAGCGTCCGCCACGACATCCGGCTCCAGGCCACGTGCTACGTCCTCGCCGGGATCTACCTCACCCGGTTCTTGGGGAGCGCCGCCGCGGTGGAGGCCGGGATCCGCGTCGACCCGTCCACGGCGCACCGCCTCGTCGCCGCAGCGGTCTTCGTGGGCGCCAAGTTCGGGAACACCAGCGACATGCTCCCGACGAGGTGGACCTCCGTGTTCGAGACGAGCTCCGACGCGGCGATCCACGCGGGGGAGATGGCCGGGCTCGAGCGGCGCTTCCTGCGCGCCGTGGACTACCGCCTGTTCGTCCGCAGCGACAGGTTCGGGTGGTTCTGCGGCGCCATGGAGCAGGCGCTGCATCGGAGCGTGAGCCGCAGCAGGAAGAGGACGGCGGCGGAAGCAGTGGGGGGAGAAGAAGGGGAGGACGAGCGCCGCCGCCGCCGCCGCCACAGCATCGTCGGGGCTTTCCTGCCGCCGCTCCCAGCCGTCGCCGCCAATTAG
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| Protein seq | MAAAATTTVEVSDDGDHPVLRDDERGIPRSLSLLAAIVEADAARHAAAATRPAESDLVRAFRGGATPTVAIGEFLERIHAFVRLESVRHDIRLQATCYVLAGIYLTRFLGSAAAVEAGIRVDPSTAHRLVAAAVFVGAKFGNTSDMLPTRWTSVFETSSDAAIHAGEMAGLERRFLRAVDYRLFVRSDRFGWFCGAMEQALHRSVSRSRKRTAAEAVGGEEGEDERRRRRRHSIVGAFLPPLPAVAAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.511189 | 0.699811 | 0.256867 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0231500 | RBH | 2.356831 | 1.097368 | 1.052411 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0231500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0008100 | RBH | 0.478126 | 0.0 | 3.093660 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008190 | RBH | 0.217409 | 3.670329 | 1.221382 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008010 | RBH | 1.052865 | 0.0 | 2.181415 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0007890 | RBH | 0.119654 | 0.098971 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0007950 | RBH | 0.896265 | 6.103553 | 2.904342 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0122000 | RBH | 0.6771795 | 1.342952 | 3.2486415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008440 | RBH | 0.044648 | 0.0 | 0.116544 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0122900 | RBH | 2.557829 | 8.5575815 | 5.853083 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0007930 | RBH | 0.0 | 0.083504 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0007930 | RBH | 0.067561 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0007930 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0008120 | RBH | 0.583211 | 0.600160 | 0.386257 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0008040 | RBH | 0.354643 | 4.753489 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008020 | RBH | 0.811827 | 0.0 | 1.307063 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0007910 | RBH | 1.044556 | 9.830714 | 0.649226 |
