Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g11430 | OGI:07015200 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:6291731-6293210 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAACGAGAACGTGAACGAACGAACGAACGTGAACGAACATGAAGATTTTGGAATACAAGAATTTATTAATGACACCGGGCTAACTACGGATCAATTGCTACGAGGTGCACCAATCAAAAAGGCGGAAGTGAAATACATGTACGAACTCGGTAAACCGCTTGTCAAGCCTGAGCAGCTGCAGTCCCTACCCACACAAATGTACAAGTTCCATCAACTGTACATGGAGATGAGCGCCACCGGTACAGAAATGATCGGAGCGAGGATCAGGGACACGGACTTCTTGCAAGGAGATGACATTCTCTGGATCAATTTCAAGGGTATCTACGAACTATACCAGCTGGATGCCCTCGACGTCTCTATTATGAGTTGCTGGATTTTGTAAGTATCGTTCAGTTAGATTTCTTATTATGTTTCCTTTAATTAGTTAGGTCCTTGTATATAAGTAGACTACATATAATATATACTTCCTTTTATTGTTGTAGAATGGAGATTCAAAGGGCCCGGCGGCGGGGGGTTTTCGATACTGGATTCATCGACCCTCGGAAAGTAAACGTCGCAATGCTCGACCAGTATCCGCAAGCCACAGAGGACAATCTCGTCCATCTCTTGAAGGCGCAGCATTACAAGACGTTCATACTATTACCGTACAACACAGAGTTAGTTTAATTTTACTGTCTTCCTATACCAAATTTCATTCCGTACGAACATGCTAAGTGTTTCATATGTAATGCATCCCACGCACATTGCAGATTCCACTGGGTCTTTTTACTCTTCAACCTGGAGGCCTGCACCGTCAACGTATATGACTCAATGGATAAAAAAGAGTCTATGTTTGACAAGGTTTTCGAACTTATAGACAGGTACTGTCATAAGTTCCTATGTTAATTAAGAATCTTGTTATAATTAATTGCTACTACGAATCATAGCTTTAAACTCCATGTAGGGCTTGGTATCGATTCCGTCATTTGGTCCGCAGTAAATGGAGAGAAAGACTTAGGCGGAAGTTCAATTTTCCTGTGAGTACACATGCTTTACATTTATATTGAATCTCCAATTCAAATACATACAAGTGTATATTAATTAGATCTCTCACCGTTTATCATTTATTTATAGTGCACAAAGCAAAAGCAGGGAACTAACTTGTGCAGCTGCTACGTGTGCGAGTATTGCCACTGCCTTGTAGACCAAATCATCACCGCAAGAGAGCTCGATGTACGTACAAATAAATTCTAAATTTCATTGCGTACGTATCGATTTGTTGTTTAATTACTAATTAATTTCATACATTAATATAGTTTATTCGCATGAGGGATAACCTGATCACACACAAGGAATTTATCGCGGTGGTTCAAGAACAACTCATGGGATTTATCAATGAACAAATCCTTGATCCCAAGGGTGAATTCTACTACGACAGAAATACAATTCATAGGTCCTTAGCTTCTGAGATAACGACTACTACTACGTCGAAATCGTAG
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| CDS seq | ATGAACGAGAACGTGAACGAACGAACGAACGTGAACGAACATGAAGATTTTGGAATACAAGAATTTATTAATGACACCGGGCTAACTACGGATCAATTGCTACGAGGTGCACCAATCAAAAAGGCGGAAGTGAAATACATGTACGAACTCGGTAAACCGCTTGTCAAGCCTGAGCAGCTGCAGTCCCTACCCACACAAATGTACAAGTTCCATCAACTGTACATGGAGATGAGCGCCACCGGTACAGAAATGATCGGAGCGAGGATCAGGGACACGGACTTCTTGCAAGGAGATGACATTCTCTGGATCAATTTCAAGGGTATCTACGAACTATACCAGCTGGATGCCCTCGACGTCTCTATTATGAGTTGCTGGATTTTAATGGAGATTCAAAGGGCCCGGCGGCGGGGGGTTTTCGATACTGGATTCATCGACCCTCGGAAAGTAAACGTCGCAATGCTCGACCAGTATCCGCAAGCCACAGAGGACAATCTCGTCCATCTCTTGAAGGCGCAGCATTACAAGACGTTCATACTATTACCGTACAACACAGAATTCCACTGGGTCTTTTTACTCTTCAACCTGGAGGCCTGCACCGTCAACGTATATGACTCAATGGATAAAAAAGAGTCTATGTTTGACAAGGTTTTCGAACTTATAGACAGGGCTTGGTATCGATTCCGTCATTTGGTCCGCAGTAAATGGAGAGAAAGACTTAGGCGGAAGTTCAATTTTCCTTGCACAAAGCAAAAGCAGGGAACTAACTTGTGCAGCTGCTACGTGTGCGAGTATTGCCACTGCCTTGTAGACCAAATCATCACCGCAAGAGAGCTCGATTTTATTCGCATGAGGGATAACCTGATCACACACAAGGAATTTATCGCGGTGGTTCAAGAACAACTCATGGGATTTATCAATGAACAAATCCTTGATCCCAAGGGTGAATTCTACTACGACAGAAATACAATTCATAGGTCCTTAGCTTCTGAGATAACGACTACTACTACGTCGAAATCGTAG
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| Protein seq | MNENVNERTNVNEHEDFGIQEFINDTGLTTDQLLRGAPIKKAEVKYMYELGKPLVKPEQLQSLPTQMYKFHQLYMEMSATGTEMIGARIRDTDFLQGDDILWINFKGIYELYQLDALDVSIMSCWILMEIQRARRRGVFDTGFIDPRKVNVAMLDQYPQATEDNLVHLLKAQHYKTFILLPYNTEFHWVFLLFNLEACTVNVYDSMDKKESMFDKVFELIDRAWYRFRHLVRSKWRERLRRKFNFPCTKQKQGTNLCSCYVCEYCHCLVDQIITARELDFIRMRDNLITHKEFIAVVQEQLMGFINEQILDPKGEFYYDRNTIHRSLASEITTTTTSKS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g11430 | LOC_Os07g11430.1 | Chr07 | 6291731 | 6293210 | + | MSU_osa1r7 | ||
| CDS seq | ATGAACGAGAACGTGAACGAACGAACGAACGTGAACGAACATGAAGATTTTGGAATACAAGAATTTATTAATGACACCGGGCTAACTACGGATCAATTGCTACGAGGTGCACCAATCAAAAAGGCGGAAGTGAAATACATGTACGAACTCGGTAAACCGCTTGTCAAGCCTGAGCAGCTGCAGTCCCTACCCACACAAATGTACAAGTTCCATCAACTGTACATGGAGATGAGCGCCACCGGTACAGAAATGATCGGAGCGAGGATCAGGGACACGGACTTCTTGCAAGGAGATGACATTCTCTGGATCAATTTCAAGGGTATCTACGAACTATACCAGCTGGATGCCCTCGACGTCTCTATTATGAGTTGCTGGATTTTAATGGAGATTCAAAGGGCCCGGCGGCGGGGGGTTTTCGATACTGGATTCATCGACCCTCGGAAAGTAAACGTCGCAATGCTCGACCAGTATCCGCAAGCCACAGAGGACAATCTCGTCCATCTCTTGAAGGCGCAGCATTACAAGACGTTCATACTATTACCGTACAACACAGAATTCCACTGGGTCTTTTTACTCTTCAACCTGGAGGCCTGCACCGTCAACGTATATGACTCAATGGATAAAAAAGAGTCTATGTTTGACAAGGTTTTCGAACTTATAGACAGGGCTTGGTATCGATTCCGTCATTTGGTCCGCAGTAAATGGAGAGAAAGACTTAGGCGGAAGTTCAATTTTCCTTGCACAAAGCAAAAGCAGGGAACTAACTTGTGCAGCTGCTACGTGTGCGAGTATTGCCACTGCCTTGTAGACCAAATCATCACCGCAAGAGAGCTCGATTTTATTCGCATGAGGGATAACCTGATCACACACAAGGAATTTATCGCGGTGGTTCAAGAACAACTCATGGGATTTATCAATGAACAAATCCTTGATCCCAAGGGTGAATTCTACTACGACAGAAATACAATTCATAGGTCCTTAGCTTCTGAGATAACGACTACTACTACGTCGAAATCGTAG
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| Protein seq | MNENVNERTNVNEHEDFGIQEFINDTGLTTDQLLRGAPIKKAEVKYMYELGKPLVKPEQLQSLPTQMYKFHQLYMEMSATGTEMIGARIRDTDFLQGDDILWINFKGIYELYQLDALDVSIMSCWILMEIQRARRRGVFDTGFIDPRKVNVAMLDQYPQATEDNLVHLLKAQHYKTFILLPYNTEFHWVFLLFNLEACTVNVYDSMDKKESMFDKVFELIDRAWYRFRHLVRSKWRERLRRKFNFPCTKQKQGTNLCSCYVCEYCHCLVDQIITARELDFIRMRDNLITHKEFIAVVQEQLMGFINEQILDPKGEFYYDRNTIHRSLASEITTTTTSKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31150 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009790 | SBH | 0.256222 | 8.223940 | 4.542645 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009930 | SBH | 0.036769 | 0.535029 | 2.081076 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0009830 | RBH | 1.336115 | 2.851068 | 7.399927 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009520 | RBH | 0.395014 | 0.219621 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0106700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0108200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009860 | RBH | 0.474596 | 0.484709 | 0.798801 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0009740 | SBH | 0.252558 | 1.070191 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
