Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g01070 | OGI:07010110 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:42657-44577 | ||||||||
| Gene Symbol | PTR1, OsPTR1, OsNPF8.2, NPF8.2 | ||||||||||
| DNA seq | ACATATGCAGCTGGAGTAGTAGCAGCTCCGATGGAGGCGACGACGACTGACGGCACGACGGACCACGCGGGGAAACCGGCGGTGAGGAGCAAGAGCGGGACGTGGAGGGCGTGCCCGTTCATCCTGGGGAACGAGTGCTGCGAGCGCCTGGCCTACTACGGCATGAGCGCCAACCTCGTCAACTACATGGTCGATCGCCTCCGCCAGGGCAACGCCGGCGCCGCCGCCAGCGTCAACAACTGGTCCGGCACATGCTACGTCATGCCCCTCGTCGGCGCCTTCCTCGCCGACGCCTACCTCGGTCGCTACCGCACCATCGCCGCGTTCATGGCGCTCTACATCGTCGGCCTCGCGCTCCTCACCATGAGCGCCTCCGTGCCAGGCATGAAGCCGCCTAACTGCGCCACAATATCCGCCTCCTCGTGCGGGCCCTCCCCAGGCCAGAGCGCCGCCTTCTTCGTCGCGCTCTACCTCATCGCCCTGGGCACCGGCGGGATCAAGCCCTGCGTCTCCTCCTTCGGCGCCGACCAGTTCGACGACGCCGACCCACGCGAGCACCGGAGCAAGGCCTCCTTCTTCAACTGGTTCTACATGTCCATCAACGTCGGCGCCCTGGTGGCGTCGTCGGTGCTCGTCTGGGTGCAGATGAACGTGGGCTGGGGGTGGGGCTTCGGCATCCCGGCCGTGGCCATGGCCGTGGCCGTCGCCAGCTTCCTCATGGGGAGCAGCCTCTACAGGCACCAGAAGCCCGGGGGGAGCCCGCTCACCAGGATGCTGCAGGTGGTCGTGGCCGCCGCCAGGAAGTCAAGGGTGGCGCTGCCCGCCGACGCCGCCGCGCTACTCTACGAGGGCGACAAGCTGGCCTGCGGGACGCGGCGGCTGGCTCACACGGAGCAGTTCAGGTGGCTGGACCGGGCTGCGGTGGTGACACCGACGACGGACAAGGACGACGACACCGGCAGCAGGTGGCGGCTGTGCCCGGTGACGCAGGTGGAGGAGCTCAAGGCGGTGGTGCGGCTGCTGCCGGTGTGGGCGAGCGGGATCGTGATGTCGGCGGTGTACGGGCAGATGAGCACCATGTTCGTGCTGCAGGGGAACACGCTGGACCCTCGCATGGGCGCTACCTTCAAGATCCCCTCGGCGTCGCTCTCCATCTTCGACACCCTCGCCGTCCTCGCCTGGGTCCCCGTCTACGACCGCCTCATCGTCCCCGCCGCCCGCCGCTTCACCGGCCACCCGCGCGGCTTCACGCAGCTCCAGCGCATGGGCATCGGCCTCCTCATCTCCGTCTTCTCCATGGTGGCCGCCGGGGTGCTGGAGGTGGTGCGCCTCCGCGTCGCCGCCGCCCACGGCATGCTCGACTCCACCTCCTACCTGCCCATCTCCATCTTCTGGCAGGTGCAGTACTTCATCATCGGCGCCGCTGAGGTGTTCGCCTTCATCGGCCAGATCGACTTCTTCTACGACCAGGCGCCCGACGACATGCGCAGCACGTGCACCGCGCTCTCGCTCACCTCCTCCGCGCTCGGCAACTACCTCAGCACGCTGCTCGTCGTCATCGTCACCGCCGCATCCACCAGGGGCGGCGGCCTCGGATGGATCCCCGACAACCTCAACCGCGGCCACCTCGACTACTTCTTCTGGCTGCTCGCCGCGCTCAGTGCTGTCAACTTCCTCGTCTACCTCTGGATCGCCAACTGGTACAGGTGCAAGACAATCACCACCACTGAAGCAGCCGCTCAGACTTGAGGGCCGGGACCCGGGAGATTATTACAATCTGAATCAATTTCTCAGAACCAGTATTAGTTACTGTTTTATTACAACCTCGAATCCCAAATGCTACAACATACATACTGCTATTTTCTGTCATAGGCATAACGTTTCTTACAGCAACTAGTAATATGTCAAAATCACTCGGAAC
More
|
||||||||||
| CDS seq | ATGGAGGCGACGACGACTGACGGCACGACGGACCACGCGGGGAAACCGGCGGTGAGGAGCAAGAGCGGGACGTGGAGGGCGTGCCCGTTCATCCTGGGGAACGAGTGCTGCGAGCGCCTGGCCTACTACGGCATGAGCGCCAACCTCGTCAACTACATGGTCGATCGCCTCCGCCAGGGCAACGCCGGCGCCGCCGCCAGCGTCAACAACTGGTCCGGCACATGCTACGTCATGCCCCTCGTCGGCGCCTTCCTCGCCGACGCCTACCTCGGTCGCTACCGCACCATCGCCGCGTTCATGGCGCTCTACATCGTCGGCCTCGCGCTCCTCACCATGAGCGCCTCCGTGCCAGGCATGAAGCCGCCTAACTGCGCCACAATATCCGCCTCCTCGTGCGGGCCCTCCCCAGGCCAGAGCGCCGCCTTCTTCGTCGCGCTCTACCTCATCGCCCTGGGCACCGGCGGGATCAAGCCCTGCGTCTCCTCCTTCGGCGCCGACCAGTTCGACGACGCCGACCCACGCGAGCACCGGAGCAAGGCCTCCTTCTTCAACTGGTTCTACATGTCCATCAACGTCGGCGCCCTGGTGGCGTCGTCGGTGCTCGTCTGGGTGCAGATGAACGTGGGCTGGGGGTGGGGCTTCGGCATCCCGGCCGTGGCCATGGCCGTGGCCGTCGCCAGCTTCCTCATGGGGAGCAGCCTCTACAGGCACCAGAAGCCCGGGGGGAGCCCGCTCACCAGGATGCTGCAGGTGGTCGTGGCCGCCGCCAGGAAGTCAAGGGTGGCGCTGCCCGCCGACGCCGCCGCGCTACTCTACGAGGGCGACAAGCTGGCCTGCGGGACGCGGCGGCTGGCTCACACGGAGCAGTTCAGGTGGCTGGACCGGGCTGCGGTGGTGACACCGACGACGGACAAGGACGACGACACCGGCAGCAGGTGGCGGCTGTGCCCGGTGACGCAGGTGGAGGAGCTCAAGGCGGTGGTGCGGCTGCTGCCGGTGTGGGCGAGCGGGATCGTGATGTCGGCGGTGTACGGGCAGATGAGCACCATGTTCGTGCTGCAGGGGAACACGCTGGACCCTCGCATGGGCGCTACCTTCAAGATCCCCTCGGCGTCGCTCTCCATCTTCGACACCCTCGCCGTCCTCGCCTGGGTCCCCGTCTACGACCGCCTCATCGTCCCCGCCGCCCGCCGCTTCACCGGCCACCCGCGCGGCTTCACGCAGCTCCAGCGCATGGGCATCGGCCTCCTCATCTCCGTCTTCTCCATGGTGGCCGCCGGGGTGCTGGAGGTGGTGCGCCTCCGCGTCGCCGCCGCCCACGGCATGCTCGACTCCACCTCCTACCTGCCCATCTCCATCTTCTGGCAGGTGCAGTACTTCATCATCGGCGCCGCTGAGGTGTTCGCCTTCATCGGCCAGATCGACTTCTTCTACGACCAGGCGCCCGACGACATGCGCAGCACGTGCACCGCGCTCTCGCTCACCTCCTCCGCGCTCGGCAACTACCTCAGCACGCTGCTCGTCGTCATCGTCACCGCCGCATCCACCAGGGGCGGCGGCCTCGGATGGATCCCCGACAACCTCAACCGCGGCCACCTCGACTACTTCTTCTGGCTGCTCGCCGCGCTCAGTGCTGTCAACTTCCTCGTCTACCTCTGGATCGCCAACTGGTACAGGTGCAAGACAATCACCACCACTGAAGCAGCCGCTCAGACTTGA
More
|
||||||||||
| Protein seq | MEATTTDGTTDHAGKPAVRSKSGTWRACPFILGNECCERLAYYGMSANLVNYMVDRLRQGNAGAAASVNNWSGTCYVMPLVGAFLADAYLGRYRTIAAFMALYIVGLALLTMSASVPGMKPPNCATISASSCGPSPGQSAAFFVALYLIALGTGGIKPCVSSFGADQFDDADPREHRSKASFFNWFYMSINVGALVASSVLVWVQMNVGWGWGFGIPAVAMAVAVASFLMGSSLYRHQKPGGSPLTRMLQVVVAAARKSRVALPADAAALLYEGDKLACGTRRLAHTEQFRWLDRAAVVTPTTDKDDDTGSRWRLCPVTQVEELKAVVRLLPVWASGIVMSAVYGQMSTMFVLQGNTLDPRMGATFKIPSASLSIFDTLAVLAWVPVYDRLIVPAARRFTGHPRGFTQLQRMGIGLLISVFSMVAAGVLEVVRLRVAAAHGMLDSTSYLPISIFWQVQYFIIGAAEVFAFIGQIDFFYDQAPDDMRSTCTALSLTSSALGNYLSTLLVVIVTAASTRGGGLGWIPDNLNRGHLDYFFWLLAALSAVNFLVYLWIANWYRCKTITTTEAAAQT |
||||||||||
| Function | Protein NRT1/ PTR FAMILY 8.2 [UniProtKB/Swiss-Prot:Q9LFB8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g01070 | LOC_Os07g01070.1 | Chr07 | 42657 | 44577 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGGCGACGACGACTGACGGCACGACGGACCACGCGGGGAAACCGGCGGTGAGGAGCAAGAGCGGGACGTGGAGGGCGTGCCCGTTCATCCTGGGGAACGAGTGCTGCGAGCGCCTGGCCTACTACGGCATGAGCGCCAACCTCGTCAACTACATGGTCGATCGCCTCCGCCAGGGCAACGCCGGCGCCGCCGCCAGCGTCAACAACTGGTCCGGCACATGCTACGTCATGCCCCTCGTCGGCGCCTTCCTCGCCGACGCCTACCTCGGTCGCTACCGCACCATCGCCGCGTTCATGGCGCTCTACATCGTCGGCCTCGCGCTCCTCACCATGAGCGCCTCCGTGCCAGGCATGAAGCCGCCTAACTGCGCCACAATATCCGCCTCCTCGTGCGGGCCCTCCCCAGGCCAGAGCGCCGCCTTCTTCGTCGCGCTCTACCTCATCGCCCTGGGCACCGGCGGGATCAAGCCCTGCGTCTCCTCCTTCGGCGCCGACCAGTTCGACGACGCCGACCCACGCGAGCACCGGAGCAAGGCCTCCTTCTTCAACTGGTTCTACATGTCCATCAACGTCGGCGCCCTGGTGGCGTCGTCGGTGCTCGTCTGGGTGCAGATGAACGTGGGCTGGGGGTGGGGCTTCGGCATCCCGGCCGTGGCCATGGCCGTGGCCGTCGCCAGCTTCCTCATGGGGAGCAGCCTCTACAGGCACCAGAAGCCCGGGGGGAGCCCGCTCACCAGGATGCTGCAGGTGGTCGTGGCCGCCGCCAGGAAGTCAAGGGTGGCGCTGCCCGCCGACGCCGCCGCGCTACTCTACGAGGGCGACAAGCTGGCCTGCGGGACGCGGCGGCTGGCTCACACGGAGCAGTTCAGGTGGCTGGACCGGGCTGCGGTGGTGACACCGACGACGGACAAGGACGACGACACCGGCAGCAGGTGGCGGCTGTGCCCGGTGACGCAGGTGGAGGAGCTCAAGGCGGTGGTGCGGCTGCTGCCGGTGTGGGCGAGCGGGATCGTGATGTCGGCGGTGTACGGGCAGATGAGCACCATGTTCGTGCTGCAGGGGAACACGCTGGACCCTCGCATGGGCGCTACCTTCAAGATCCCCTCGGCGTCGCTCTCCATCTTCGACACCCTCGCCGTCCTCGCCTGGGTCCCCGTCTACGACCGCCTCATCGTCCCCGCCGCCCGCCGCTTCACCGGCCACCCGCGCGGCTTCACGCAGCTCCAGCGCATGGGCATCGGCCTCCTCATCTCCGTCTTCTCCATGGTGGCCGCCGGGGTGCTGGAGGTGGTGCGCCTCCGCGTCGCCGCCGCCCACGGCATGCTCGACTCCACCTCCTACCTGCCCATCTCCATCTTCTGGCAGGTGCAGTACTTCATCATCGGCGCCGCTGAGGTGTTCGCCTTCATCGGCCAGATCGACTTCTTCTACGACCAGGCGCCCGACGACATGCGCAGCACGTGCACCGCGCTCTCGCTCACCTCCTCCGCGCTCGGCAACTACCTCAGCACGCTGCTCGTCGTCATCGTCACCGCCGCATCCACCAGGGGCGGCGGCCTCGGATGGATCCCCGACAACCTCAACCGCGGCCACCTCGACTACTTCTTCTGGCTGCTCGCCGCGCTCAGTGCTGTCAACTTCCTCGTCTACCTCTGGATCGCCAACTGGTACAGGTGCAAGACAATCACCACCACTGAAGCAGCCGCTCAGACTTGA
More
|
|||||||
| Protein seq | MEATTTDGTTDHAGKPAVRSKSGTWRACPFILGNECCERLAYYGMSANLVNYMVDRLRQGNAGAAASVNNWSGTCYVMPLVGAFLADAYLGRYRTIAAFMALYIVGLALLTMSASVPGMKPPNCATISASSCGPSPGQSAAFFVALYLIALGTGGIKPCVSSFGADQFDDADPREHRSKASFFNWFYMSINVGALVASSVLVWVQMNVGWGWGFGIPAVAMAVAVASFLMGSSLYRHQKPGGSPLTRMLQVVVAAARKSRVALPADAAALLYEGDKLACGTRRLAHTEQFRWLDRAAVVTPTTDKDDDTGSRWRLCPVTQVEELKAVVRLLPVWASGIVMSAVYGQMSTMFVLQGNTLDPRMGATFKIPSASLSIFDTLAVLAWVPVYDRLIVPAARRFTGHPRGFTQLQRMGIGLLISVFSMVAAGVLEVVRLRVAAAHGMLDSTSYLPISIFWQVQYFIIGAAEVFAFIGQIDFFYDQAPDDMRSTCTALSLTSSALGNYLSTLLVVIVTAASTRGGGLGWIPDNLNRGHLDYFFWLLAALSAVNFLVYLWIANWYRCKTITTTEAAAQT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.122658 | 0.086791 | 0.079962 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0100600 | RBH | 0.164967 | 0.132419 | 0.318759 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0100600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000050 | RBH | 0.000000 | 0.902606 | 2.125155 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000050 | RBH | 0.067935 | 0.0 | 0.168157 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000050 | RBH | 0.0 | 0.0 | 1.975932 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000060 | RBH | 0.0 | 0.0 | 2.088508 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0082600 | RBH | 0.02739 | 0.0245125 | 4.8237575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000040 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000040 | RBH | 0.009060 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000040 | RBH | 0.0 | 0.0 | 0.0 |
