Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g49100 | OGI:06083420 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:29754545-29756479 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCGGGCGCGCGGCGCTCCTCGCGCTGCTCCTGGCGCTCGCGGCGCCGGCGCCGGCCGCGTCGCAGCCCGCCGCCGTGGACCCGCCGCCGTCGTGGGCGTTCCCGAACGCCCGCCTCCGCGCGGCGTACGTCGCGCTCCAGGCGTGGAGGCGCACGGCCATCTTCTCCGACCCGGCGAACTTCACCGCCAACTGGTCCGGCCCCGACGTGTGCGGCTACAACGGCGTGTTCTGCGCGGCGCACCCCACCGACGGCCGCGTCCGCGTCGTCGCCGGGCTCGACCTCAACCACGCCGACATCGCCGGGTATATCCCGGCGTCGCTCCCCGAGGGCCTCCCCGACCTCGCGCTGCTCCACCTCAACTCCAACCGCTTCTGCGGCGTGCTCCCCGACACCTTCTCCCACCTCAGGCTCCTCCACGAGCTCGACATCAGCAACAACCGCTTCGTCGGCGGCTTCCCGGAGGTGGTGCTCTCGCTGCCGTCGCTCAGGTACCTCGACCTCAGGTTCAACGACTTCGAGGGCGCCATCCCGCCCAAGCTGTTCGACCGCCCGCTCGACGCCATCTTCCTCAACTCCAACCGCCTCACGCGCCCCATCCCGCCCAACCTCGGGAGCTCGCCGGCGTCCGTCGTCGTGCTCGCGCACAACCGCCTCGGGGGTTGCATCCCGCCGTCCATCGGGAGGATGGCCGAGACGCTCAACGAAATCGTGCTCATCGACGACGAGCTCACCGGATGCATCCCGCCGCAGGTCGGGCTGCTCAGGAAGGTGACGGTGTTCGACGTCAGCGGCAACCACCTCCAGGGCCCGCTTCCCGGGAGCGTCGCCGGCTTGGCCGCCGTCGAGCAGCTCGACGTCGCCGGGAACCTCTTCGAAGGCCCGGTGCCGGCGACCATCTGCTCGCTGCAGAGCCTCAAGAACTTCACCTACGAGGACAACTTCTTCTCCTCGCGGCCGGGTTGCCCGGCGGCGACGGCCGACGGGCGGTGGAACTGCATCCCTGGAGCTCCGGCTCAGCGGCCGCCGGCGCAGTGCGCCGCCGCGGCCGCCCACCCGTTCGACTGCAGCAAGGCGCAATGCCAGGCGACGCCGCCGACGACTCGCCGCCCAGGTGGCCGCACGCCGCTGGCTCCTCATAGATCGCCTTTGCCACACCACATGCCTCCGAGACGGACGCCGCCGACGCCGCCGCCGCCGAGCTCGCCCACCCCATCTCACCTGCCGCCGCCGCCGCCAACCTACAGCGAGAGCCCCAAATCCTCAATGCCGCCATCAACCTCACCACCATCCTCTCACGGCGCCTCGCCGCCATCCTCATCCTCGTCGCCGCCCACAGAGCACCCGGGATACGTGTTGCCGCCGCTCACGCCGCCGCCGCCGACGACGACGCCACCAGGACACCACGCTCCGGTCCCGGGAACACCATCCTCGCCGCCAAGCTCTTCTTGGTCGCCACCTCAAGGAGGCGGAGGGAAGCTGCCGTTCCCGCCGGTGCACGGGGTGGCGTACTCGTCGCCGCCGCCGCCGCCATCGGGAGACAAGCTGCCGTTCCCGCCGGTGTACGGGGTGGCGTACTCATCGCCGCCGCCGCCATCGAAGCCGTACAACTAGGTAGTGTCACTGTCTGCTGCTGATCTGACGGTGGATATGGGATCGGTCGCCGCCTCCTCGGCCGGTCGCCGCCGTCGTACGGACTCCTCGTCGTTGTTCATCATCATGAGTACATCTTTCACTGTAGTCGTTGGTTGGGGTTGATTAGCTTCCATTTTTCTCTTTTTTTTGAGGTTGTTTGGTCAGATTGAATTCAAAGGCTCTGTGGATTCTTTCTTTCTTCGTCTCCTTTTACTCGCTTTTTAACCATCTTTTTTTTTTCCCAACTCGACTCGATCGATCACATCACTTGGTAATAAAGATGGGGATTAGCTTTTG
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| CDS seq | ATGGCCGGGCGCGCGGCGCTCCTCGCGCTGCTCCTGGCGCTCGCGGCGCCGGCGCCGGCCGCGTCGCAGCCCGCCGCCGTGGACCCGCCGCCGTCGTGGGCGTTCCCGAACGCCCGCCTCCGCGCGGCGTACGTCGCGCTCCAGGCGTGGAGGCGCACGGCCATCTTCTCCGACCCGGCGAACTTCACCGCCAACTGGTCCGGCCCCGACGTGTGCGGCTACAACGGCGTGTTCTGCGCGGCGCACCCCACCGACGGCCGCGTCCGCGTCGTCGCCGGGCTCGACCTCAACCACGCCGACATCGCCGGGTATATCCCGGCGTCGCTCCCCGAGGGCCTCCCCGACCTCGCGCTGCTCCACCTCAACTCCAACCGCTTCTGCGGCGTGCTCCCCGACACCTTCTCCCACCTCAGGCTCCTCCACGAGCTCGACATCAGCAACAACCGCTTCGTCGGCGGCTTCCCGGAGGTGGTGCTCTCGCTGCCGTCGCTCAGGTACCTCGACCTCAGGTTCAACGACTTCGAGGGCGCCATCCCGCCCAAGCTGTTCGACCGCCCGCTCGACGCCATCTTCCTCAACTCCAACCGCCTCACGCGCCCCATCCCGCCCAACCTCGGGAGCTCGCCGGCGTCCGTCGTCGTGCTCGCGCACAACCGCCTCGGGGGTTGCATCCCGCCGTCCATCGGGAGGATGGCCGAGACGCTCAACGAAATCGTGCTCATCGACGACGAGCTCACCGGATGCATCCCGCCGCAGGTCGGGCTGCTCAGGAAGGTGACGGTGTTCGACGTCAGCGGCAACCACCTCCAGGGCCCGCTTCCCGGGAGCGTCGCCGGCTTGGCCGCCGTCGAGCAGCTCGACGTCGCCGGGAACCTCTTCGAAGGCCCGGTGCCGGCGACCATCTGCTCGCTGCAGAGCCTCAAGAACTTCACCTACGAGGACAACTTCTTCTCCTCGCGGCCGGGTTGCCCGGCGGCGACGGCCGACGGGCGGTGGAACTGCATCCCTGGAGCTCCGGCTCAGCGGCCGCCGGCGCAGTGCGCCGCCGCGGCCGCCCACCCGTTCGACTGCAGCAAGGCGCAATGCCAGGCGACGCCGCCGACGACTCGCCGCCCAGGTGGCCGCACGCCGCTGGCTCCTCATAGATCGCCTTTGCCACACCACATGCCTCCGAGACGGACGCCGCCGACGCCGCCGCCGCCGAGCTCGCCCACCCCATCTCACCTGCCGCCGCCGCCGCCAACCTACAGCGAGAGCCCCAAATCCTCAATGCCGCCATCAACCTCACCACCATCCTCTCACGGCGCCTCGCCGCCATCCTCATCCTCGTCGCCGCCCACAGAGCACCCGGGATACGTGTTGCCGCCGCTCACGCCGCCGCCGCCGACGACGACGCCACCAGGACACCACGCTCCGGTCCCGGGAACACCATCCTCGCCGCCAAGCTCTTCTTGGTCGCCACCTCAAGGAGGCGGAGGGAAGCTGCCGTTCCCGCCGGTGCACGGGGTGGCGTACTCGTCGCCGCCGCCGCCGCCATCGGGAGACAAGCTGCCGTTCCCGCCGGTGTACGGGGTGGCGTACTCATCGCCGCCGCCGCCATCGAAGCCGTACAACTAG
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| Protein seq | MAGRAALLALLLALAAPAPAASQPAAVDPPPSWAFPNARLRAAYVALQAWRRTAIFSDPANFTANWSGPDVCGYNGVFCAAHPTDGRVRVVAGLDLNHADIAGYIPASLPEGLPDLALLHLNSNRFCGVLPDTFSHLRLLHELDISNNRFVGGFPEVVLSLPSLRYLDLRFNDFEGAIPPKLFDRPLDAIFLNSNRLTRPIPPNLGSSPASVVVLAHNRLGGCIPPSIGRMAETLNEIVLIDDELTGCIPPQVGLLRKVTVFDVSGNHLQGPLPGSVAGLAAVEQLDVAGNLFEGPVPATICSLQSLKNFTYEDNFFSSRPGCPAATADGRWNCIPGAPAQRPPAQCAAAAAHPFDCSKAQCQATPPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYSESPKSSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPTTTPPGHHAPVPGTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSSPPPPPSGDKLPFPPVYGVAYSSPPPPSKPYN |
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| Function | Leucine-rich repeat extensin-like protein 2 [UniProtKB/Swiss-Prot:O48809] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g49100 | LOC_Os06g49100.1 | Chr06 | 29754545 | 29756479 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGGGCGCGCGGCGCTCCTCGCGCTGCTCCTGGCGCTCGCGGCGCCGGCGCCGGCCGCGTCGCAGCCCGCCGCCGTGGACCCGCCGCCGTCGTGGGCGTTCCCGAACGCCCGCCTCCGCGCGGCGTACGTCGCGCTCCAGGCGTGGAGGCGCACGGCCATCTTCTCCGACCCGGCGAACTTCACCGCCAACTGGTCCGGCCCCGACGTGTGCGGCTACAACGGCGTGTTCTGCGCGGCGCACCCCACCGACGGCCGCGTCCGCGTCGTCGCCGGGCTCGACCTCAACCACGCCGACATCGCCGGGTATATCCCGGCGTCGCTCCCCGAGGGCCTCCCCGACCTCGCGCTGCTCCACCTCAACTCCAACCGCTTCTGCGGCGTGCTCCCCGACACCTTCTCCCACCTCAGGCTCCTCCACGAGCTCGACATCAGCAACAACCGCTTCGTCGGCGGCTTCCCGGAGGTGGTGCTCTCGCTGCCGTCGCTCAGGTACCTCGACCTCAGGTTCAACGACTTCGAGGGCGCCATCCCGCCCAAGCTGTTCGACCGCCCGCTCGACGCCATCTTCCTCAACTCCAACCGCCTCACGCGCCCCATCCCGCCCAACCTCGGGAGCTCGCCGGCGTCCGTCGTCGTGCTCGCGCACAACCGCCTCGGGGGTTGCATCCCGCCGTCCATCGGGAGGATGGCCGAGACGCTCAACGAAATCGTGCTCATCGACGACGAGCTCACCGGATGCATCCCGCCGCAGGTCGGGCTGCTCAGGAAGGTGACGGTGTTCGACGTCAGCGGCAACCACCTCCAGGGCCCGCTTCCCGGGAGCGTCGCCGGCTTGGCCGCCGTCGAGCAGCTCGACGTCGCCGGGAACCTCTTCGAAGGCCCGGTGCCGGCGACCATCTGCTCGCTGCAGAGCCTCAAGAACTTCACCTACGAGGACAACTTCTTCTCCTCGCGGCCGGGTTGCCCGGCGGCGACGGCCGACGGGCGGTGGAACTGCATCCCTGGAGCTCCGGCTCAGCGGCCGCCGGCGCAGTGCGCCGCCGCGGCCGCCCACCCGTTCGACTGCAGCAAGGCGCAATGCCAGGCGACGCCGCCGACGACTCGCCGCCCAGGTGGCCGCACGCCGCTGGCTCCTCATAGATCGCCTTTGCCACACCACATGCCTCCGAGACGGACGCCGCCGACGCCGCCGCCGCCGAGCTCGCCCACCCCATCTCACCTGCCGCCGCCGCCGCCAACCTACAGCGAGAGCCCCAAATCCTCAATGCCGCCATCAACCTCACCACCATCCTCTCACGGCGCCTCGCCGCCATCCTCATCCTCGTCGCCGCCCACAGAGCACCCGGGATACGTGTTGCCGCCGCTCACGCCGCCGCCGCCGACGACGACGCCACCAGGACACCACGCTCCGGTCCCGGGAACACCATCCTCGCCGCCAAGCTCTTCTTGGTCGCCACCTCAAGGAGGCGGAGGGAAGCTGCCGTTCCCGCCGGTGCACGGGGTGGCGTACTCGTCGCCGCCGCCGCCGCCATCGGGAGACAAGCTGCCGTTCCCGCCGGTGTACGGGGTGGCGTACTCATCGCCGCCGCCGCCATCGAAGCCGTACAACTAG
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| Protein seq | MAGRAALLALLLALAAPAPAASQPAAVDPPPSWAFPNARLRAAYVALQAWRRTAIFSDPANFTANWSGPDVCGYNGVFCAAHPTDGRVRVVAGLDLNHADIAGYIPASLPEGLPDLALLHLNSNRFCGVLPDTFSHLRLLHELDISNNRFVGGFPEVVLSLPSLRYLDLRFNDFEGAIPPKLFDRPLDAIFLNSNRLTRPIPPNLGSSPASVVVLAHNRLGGCIPPSIGRMAETLNEIVLIDDELTGCIPPQVGLLRKVTVFDVSGNHLQGPLPGSVAGLAAVEQLDVAGNLFEGPVPATICSLQSLKNFTYEDNFFSSRPGCPAATADGRWNCIPGAPAQRPPAQCAAAAAHPFDCSKAQCQATPPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYSESPKSSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPTTTPPGHHAPVPGTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSSPPPPPSGDKLPFPPVYGVAYSSPPPPSKPYN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.158767 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0704500 | RBH | 0.0 | 0.0 | 0.825334 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04540 | RBH | 0.327585 | 0.267299 | 1.333138 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0704500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028350 | RBH | 0.0 | 0.0 | 1.103733 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028170 | RBH | 0.0 | 2.615042 | 0.823850 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028310 | RBH | 0.0 | 0.0 | 2.010659 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027900 | RBH | 0.0 | 0.091452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028390 | RBH | 0.0 | 14.294104 | 1.176036 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0467800 | RBH | 1.447551 | 2.113728 | 2.0257995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027760 | RBH | 0.0 | 0.0 | 0.128180 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0451300 | RBH | 1.5645715 | 0.761311 | 9.6411235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028350 | RBH | 0.0 | 3.707744 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027940 | RBH | 0.0 | 13.134156 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028600 | RBH | 0.0 | 0.248287 | 0.239031 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028220 | RBH | 0.0 | 3.486093 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028100 | RBH | 0.0 | 0.550049 | 1.642207 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028180 | RBH | 0.0 | 0.0 | 1.614504 |
