Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g48534 | OGI:06082350 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:29365981-29370366 | ||||||||
| Gene Symbol | GATA20, OsTIFY2b, TIFY2B, OsCCT24, CCT24, OsGATA20 | ||||||||||
| DNA seq | GGGATAAATCAATTTTGAGATAAATATAAATAACTACAAGACACAAGTAAAATATTCACTTCATCACCTTCTCTGTTCTCACTTCCACCCAAGAGTCTAACAAGAAATAAAATTGCTACGGCCATAATGACCGGAAGCATGATTTTTCATGGCTTACAACATATGCAGAACAACATTCAAACCCTAAATGATGGTAAAGAAATGGCCTAGGTACCTAACAGGTTCTCATCAAGTTATAGTACAGACAGTTAAACTACATGGATATAATGCCGGCATGATGTTCGCGATCCTCCACAAGACAAACATCGCTATACTCACGTTGATGATTCGTGGCCATTGACAGTGGCTGGTGCAGGAATTTCTTGCTCGGTGGTAGGTGCTGCAGCACTTCCATTCTGTGGAGGAAAAGTAGCAGAAGCTTCAAAAATTGATTTGTTTGAAATATCAAGGCATATTGAAGAAGCTACAGAGACCGGAAAAGAGAATTTGTTGGTTGTAACAGGATACAGAAACTTTTAGGACATTATACTTGATGCCTGAAATGGGCCATAACTTAGGCTGTTTCTTTCGAGGAATCAATCACATATCGAGGGATGAGGTGGTTATGGACCAACACATTCCATTCCTCGAACCGAACAAAAAAGTGAGACTTGGGAGTATCTGATGGTCCATTGGCCATCCAATTCCTCAAAACAAAACAACCCCTAAAATTCTTAAATGGCCACATCATTATAAGCCATACTGCCGTCAGAAACAAATGTAAACTACAGTATATTGATGCTGAAGCTAGCCTCAGGCTGCCAGTGCAAATAAAGGAAAACAAGTTCATATTTAACCGGCAGTAAACAAAAGCCACAGTTATAGGACAGCTTTCATATTTTGAATACCAAGGAGAGAAGAAAATAACATGCAAAGATGCCCAACCGTCAGCATTAAATCTTCCCATAGCTAAACCAATTATGTGTCATGATTTTAAGTTTACAACTATGGATTGAAAGTCAACCAGTCACACCAGTGACCAGTATAACAGGAAACAATATCAGTATATCACACTATCTAATATCCTCAAATTTAGAATGGAATAGCTAGAGCCACAGTTTTTTAATCCCCTGGCAATGGACCATAACTTGATTTACCTTCATAAAAGTTAAGAAAATATTGAGAAGCCATTGTGGACCAATATTTTGATTAATTTCTCCAAAATTTTCAGCAACTGCTTAAAAATGGCTACAATCATCAGTAAGCTAGATAACGAAACAAGGATTCAACTCATCTGAGCCAAAGAGTCATTTCACTTTCAACTTATTGTGAAAATTAGAATCCTCAAAAAGTATGTAAATAGATGTGCAGCTAATGGGGGAAAATGACTTACACCATCATTAACTGATGCCACAACTTGAATAGGTGTGGGAGGTGCTTTTGATAGGTCCCTCAACATCCCCTACAAAAAAAAAAAAGAGATTTGTTTTTAGTAGAAAAACAGAGATTCCACATTTATGAGGTAAGGTGTCAAAAATTTAAAGATAAGATCTAAGTACTTTGATCACTTGATGTATGGATTACTAAAAACAAACAGAAAGAGAAAGCAATGTGAAGCATAGTTTAAAAGACCCATGCTTTCAGTGTAAGTGTATAACAGACCATTTATGGATTTGGATTATGGATTACCAACAATTTCCTGTGTTTGTCAACAAATAAAGTTTAAAACTCTTATTGCCAATTAACAAAATGCTCAGCTATGAAACTTTCCATGCACCAGGAAGCACATCAGATTGTTAAGACTAATATTAATGATAGTGTGAAACTTGTTCAAGAACAGACAGAACTCACTAAATAGATTACATATTCAAACATCAGCACCATGCATCTAACTTCATTGCATTGGATTGTATACTAGAAACTTCAACAAAACTCATCCCAACAACCTATACTCAAATAACAAACTGCATACCAAGTTGGCATGACACCTTGAACTTGGCATTTTAACCTTCAATTGCATATATAGATATACATAGAAATAAGTCAAGACAAGTGTGAGTAACTGGTGCTTTAAATATGTCACGATAATAGCTTATAAAGTGCAAATTAATAATGTAACTTAAACAATTTCAACAAAAATGATCCTAGCAAAAAATTGCTGATAGAATCTTAATATTAAGTCGGTCTTCAGTTCTTAGAAGTTATAATATTTTGCTACATCTATGATCTATCACAAAGTTTGACTTATAAGTTATAACTCTTGAGTTTCTATGCTGACTTAAATCTAGCTATGCAATGGTACTACTAAACATTTATAGGTACCTTGTTTGCCCACATGAGGCCACAGGCATTGCATAATGTTCTTGGCCCATCAGGTCCACGACGCATCATAGGTGTAGCCTTTGCATTTATACCACAGTGATGGCATCTGAAAAAAAAATAGCAATCACCAAAATTTATAAATGATGTTTCATATGCTTAGAGAAACCACAATGATAAAAAGGTAGTAATAACCTGGCATACACCATACAAAAAAGAAGCATATTTGCATGTATGATAAGTATAACAAAGATATCTATATCAAACTTACATGCAAATTGTTCAACTAAAGTTAGCCAAGTAAAAAATGGGATTGATCCACAGTTCATAGCATCTATACAATGCAATACACTAGAGCACACGATTCCAAGCATGGATTGATTGTCAACACCTTGCTAATAAATATGTAAAGGATGTTTCACACATCAAGAAATATTGCTGGAAAAGTCATAAACCAAGAACCAAAAAAAATGGGATTTTTCTCTACTTACTCAGCAGCAGAGGGAGGCCGACCTTCCACTGATCCCCAGTTTGGGGAGCCATCTGAAGCTGTCAATTCCGATGTTGCTTCATCACCCTTTGGTTTTGAAGATGTAAACTGACCTCTATTGCGCTGCATCCTACACATACATAGAAAATATTTTAAACTATGAAGATTTCCTGTACATAATCTAAGCAGAGGTAATTTAGAAAACATGAATAACAGCAAAATATAAATCCTACTATCTGCCACGGTAATATCAAAACTGAAAGTAACCACAAGAAAGACACTGATACTTAAAAAGGTACTACCTCCGTTTCATATTATAAGTCGCTTTGACACTGATACTTTGATCTTTAAGTTTGACTAAGTTTATATAAAAATATAGCAATATTTTCAACACAAAACAAACTTATTATCAAAATATTGTAAATGTTAGTTCTAACAAAACTAATTTGGTGTTGTACATGTTGCTAAATTTGTCTATAAACTTGGTTAAACTTGAAGAAGTTTGACTACGAAAAAAGTCAGAACGACTTACAATATGAAACAGAGGGAGAATAGCTTAATAAAAGCAGCCAGACAACTCAAAACTAAAACACGCTTTTGGTACAAATACAATGTATAAGTTGCCAAGTTTAGATTATATTATTCAGTTCACTTCCACTATATTAAGTACATTGTTAGCAGAGTGTATTACTCACAGATCAAATACAGCACGCTTGACTCTTCCTAATTCAGGTCAATCAGCATTCAAATAGGAACAAAATTCTATAGCATTTCAGTACGTATAAACATCCACAGCCAATGCTAAGCTAGCACCAACCTAAGTGCAACTTCCTTCCGAACAGAATACCGGATCTTCTTATCAAAGTTGCGCTCCTTCCGCTTTTCTCTGAACCGCATCAAAGATGCCACCCGGTGTGGAAAATTCAACCTCTGAAACCAAGGGAAAAAAAATACACAATGAACTCCAGAGTGCACAATCCTGTCAAACATAATGAACTGATACTACAAAGAAAGACAGTTCACCATCACCCGTGCCAACCTTACTGTATGGCGCAGATGACGATGCTCCAGAGCCCAAACCTGGGTTCAGCTCCCTTCCACCGAGTAGCAAGAGCACTGCTTGAACCTGCGAGAAGTAATCGAACACTCAGCCTTTTTTTTTTTGCAACATCAATCCCAGTCTATACCGAAACACACATGACAAACAAACAAGGCCAAGCGCATGAGAGGCAAACGACCTTGTCAGGGGAGACAGAGTCGAAGACGTAGACCTCGCCCTGGAACGAGAGGGTGAGTTGGTTGGACGCCATGGGCTGGACAGCGCCGGAGGCGGCGAGCATCCCGCCGTGCGGGTCCAGCTGCGCGGCGGCCTCCGCGTCCATCGGGACAGCCACCTCGCCGCCCACCCCCTCATGATGTTGCGCGTCCTCATCCTCCTCCATCTCCTCCTCCTCCTCCTCCAACTCATCCTCCTCCTCCTCATACTCCTCCTCCGCCCCCAGGGCGCGGTGCTCCTCCTCGAAGCGGGCCATCGCCTCGGCCTCGGCGGCCACCGCGGCGAGGTGGTCGACCGTGGGCGCGACGTGCGCCGCCGCATC
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| CDS seq | ATGGCCCGCTTCGAGGAGGAGCACCGCGCCCTGGGGGCGGAGGAGGAGTATGAGGAGGAGGAGGATGAGTTGGAGGAGGAGGAGGAGGAGATGGAGGAGGATGAGGACGCGCAACATCATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCCGCCGCGCAGCTGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGCGCTGTCCAGCCCATGGCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTCGACTCTGTCTCCCCTGACAAGGTTCAAGCAGTGCTCTTGCTACTCGGTGGAAGGGAGCTGAACCCAGGTTTGGGCTCTGGAGCATCGTCATCTGCGCCATACAGTAAGAGGTTGAATTTTCCACACCGGGTGGCATCTTTGATGCGGTTCAGAGAAAAGCGGAAGGAGCGCAACTTTGATAAGAAGATCCGGTATTCTGTTCGGAAGGAAGTTGCACTTAGGATGCAGCGCAATAGAGGTCAGTTTACATCTTCAAAACCAAAGGGTGATGAAGCAACATCGGAATTGACAGCTTCAGATGGCTCCCCAAACTGGGGATCAGTGGAAGGTCGGCCTCCCTCTGCTGCTGAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGGGACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGA
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| Protein seq | MARFEEEHRALGAEEEYEEEEDELEEEEEEMEEDEDAQHHEGVGGEVAVPMDAEAAAQLDPHGGMLAASGAVQPMASNQLTLSFQGEVYVFDSVSPDKVQAVLLLLGGRELNPGLGSGASSSAPYSKRLNFPHRVASLMRFREKRKERNFDKKIRYSVRKEVALRMQRNRGQFTSSKPKGDEATSELTASDGSPNWGSVEGRPPSAAECHHCGINAKATPMMRRGPDGPRTLCNACGLMWANKGMLRDLSKAPPTPIQVVASVNDGNGSAAAPTTEQEIPAPATVNGHESST |
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| Function | GATA transcription factor 20 [UniProtKB/Swiss-Prot:Q5Z4U5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g48534 | LOC_Os06g48534.1 | Chr06 | 29365981 | 29370366 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCCGCTTCGAGGAGGAGCACCGCGCCCTGGGGGCGGAGGAGGAGTATGAGGAGGAGGAGGATGAGTTGGAGGAGGAGGAGGAGGAGATGGAGGAGGATGAGGACGCGCAACATCATGAGGGGGTGGGCGGCGAGGTGGCTGTCCCGATGGACGCGGAGGCCGCCGCGCAGCTGGACCCGCACGGCGGGATGCTCGCCGCCTCCGGCGCTGTCCAGCCCATGGCGTCCAACCAACTCACCCTCTCGTTCCAGGGCGAGGTCTACGTCTTCGACTCTGTCTCCCCTGACAAGGTTCAAGCAGTGCTCTTGCTACTCGGTGGAAGGGAGCTGAACCCAGGTTTGGGCTCTGGAGCATCGTCATCTGCGCCATACAGTAAGAGGTTGAATTTTCCACACCGGGTGGCATCTTTGATGCGGTTCAGAGAAAAGCGGAAGGAGCGCAACTTTGATAAGAAGATCCGGTATTCTGTTCGGAAGGAAGTTGCACTTAGGATGCAGCGCAATAGAGGTCAGTTTACATCTTCAAAACCAAAGGGTGATGAAGCAACATCGGAATTGACAGCTTCAGATGGCTCCCCAAACTGGGGATCAGTGGAAGGTCGGCCTCCCTCTGCTGCTGAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGGGACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGA
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| Protein seq | MARFEEEHRALGAEEEYEEEEDELEEEEEEMEEDEDAQHHEGVGGEVAVPMDAEAAAQLDPHGGMLAASGAVQPMASNQLTLSFQGEVYVFDSVSPDKVQAVLLLLGGRELNPGLGSGASSSAPYSKRLNFPHRVASLMRFREKRKERNFDKKIRYSVRKEVALRMQRNRGQFTSSKPKGDEATSELTASDGSPNWGSVEGRPPSAAECHHCGINAKATPMMRRGPDGPRTLCNACGLMWANKGMLRDLSKAPPTPIQVVASVNDGNGSAAAPTTEQEIPAPATVNGHESST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.672625 | 0.446443 | 0.860915 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0698900 | RBH | 1.042670 | 0.695829 | 3.505916 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05510 | RBH | 1.801237 | 1.556216 | 1.399860 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0698900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027880 | RBH | 0.000000 | 11.361343 | 5.967943 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027700 | RBH | 0.094239 | 0.000000 | 1.403175 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027830 | RBH | 1.850431 | 7.716249 | 7.626785 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027420 | RBH | 0.049230 | 0.631071 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027900 | RBH | 4.162374 | 20.123604 | 5.845764 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0461600 | RBH | 8.076584 | 16.8141325 | 24.4506115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027290 | RBH | 0.378696 | 0.800657 | 0.871228 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0445200 | RBH | 6.242538 | 12.5911175 | 19.0564365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027800 | RBH | 0.082247 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027870 | RBH | 0.386403 | 11.559842 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027460 | RBH | 9.554151 | 52.193401 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028100 | RBH | 1.056088 | 1.077529 | 1.130730 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027740 | RBH | 0.282536 | 2.149813 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027630 | RBH | 0.300369 | 2.463612 | 2.195112 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027710 | RBH | 1.024581 | 15.590256 | 6.751846 |
