Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g48040 | OGI:06081760 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:29059687-29063780 | ||||||||
| Gene Symbol | OsRFP, OsMAR1, MAR1 | ||||||||||
| DNA seq | AATTGCAAATCTTTTTTTGCCGGGTCGGCGAAAGGGTGCTGACCAAATTTCATTAAGATCAAGGAAATTGCAAATCCTTTTTTTGAGACAAAGGCAAAAGCTTTGCCTTATTACATTGATACCCAAGGAAGAGTACACATCCGAGTACCAACCCAACAGATAACACCTTACGAACACTCCAAACTCAAACCAGGCTACAAAGCACCTGAAACACTGGACACCAAATCAGTAATTGCAAATCTAATATGTGGTTGGGGGCCAAAGTGAATGAATTTTTACTAACACTCCAATCGAGCAGAATTTTAATTATTGTAACCATAAGTCCAATCAAGCAGGAATTTTTCCCAAGGGTCCTCTGGTCTCATTATCTGATGGCAGGTGATGTGTAATTTGGACCGGATACCGAAACAAAAATGTACAGGAGTTTCCAAGAAGAAAGCAATCTATCATATTCACAAATTTGAGTGAATTGAGTCAGTGTCTAGCATGTCTAACACTGTTTCATTATAAATTTATAATATTTACGAGCTTGAACAACCTATATTCATGTGCCCCCCTTGTCCATCTCTGAAGGTATTGCTGAAGTTTTGCATATTGGACACCAGTTCTTCTGTCTAAGCCATTCATGAATGCAGGACACATGGTATTGATGCTCACACTGCATCCTACCAACTTCTTCGCCCTCAATGTATTCCTCCTGTAGCATAACGTTAATATCAAACAGTGCCAATTAGAAGCATAAGCAACACAAGGAAATAGTTGTCTAACGTAAAATAAGTACAGCATGTGCATTAAAATGGCTAATGAACGGGACATATAGAAAACAAAATAAGAAAAATTGTAGAGCTGAGAAAACATGAAGCTAAACATAATTTTCCTCAACATAATACTCCTATTTTCCTTTGCTTTATTGTGCACCCTAAGTAATCATGAATTATATTAATTAACATCGTGTGCAACAGAGATGACAATCTCTGAGTAATACCTGACATATGCTGCACTTGGCGTCATCTAGTACAGCTCTGTTCGCTTCAAGATCTGAATTTGGTAACTTATACACATTTCGCTTGAGACACTTCACAAGCTGCTCATCAGATAGGGCAGTGCTGACAGAACCGATTCGCTCCTCTAGTGCTAATAGTTCCTGAGCAAATGAAAAGCAGAAGAAAATACATAACCTTCTGATGTCAGAATCAGATGAGCCGATGACACTTCTTTGTTAAGGAAAGAGATATTCTAATTGAACCTTTGAGGAAGAATCAACATGGTGAAAGCAATACCTCATAAGACATGTTGTCAATATCCATTCTCATATCTCTGTGCTGGTCATGCAGGCCAAGGCCGCTAAGAAACAAGTTAGTTTCTAGCACCAGCAATTGCTGCCAATATTTTCATCCAGAAGGCCAGAGCACATTTCAGTACCATGTTAGCAATAAAATTGAAAAAAGGGAATCAAGTCAAAGAACTAACCTCATAAGTCAATTCATCATCTTGTTCAATCCTGTCCAATGCTAGCAACACCTGAAAACAGGAATCACACCAAATATCAAGAAACTGTAGCAGCCAATAGAATACAGTATATTGCAAATATATGATATTTAGTAAATTTCATCCCAAACAAAATGTAGGCACAGTATGACAACTCAGACAAGTATGTTACAAGTTTCTGGAAAACAACCTCAGCGATGCCTTCCATGTTTATACGCCTGTAGTTCTCTCTCTCCACCAGCAAACCATGAAACATTTGTGGAGGGCTTTCGTCAGGGCGGTAACTTGATCTGCTCCTTGCTGTCTGATTACTTGAGCCTTGACGACTAGATGAGTATATCTCATGTGGTAATTCCATAGAAAAAGGCCTCATCGATCTCCGTGGGGCAGCTTCACCCAAGGAGAAATGAGCCCATTCTGGTTGGCGATCCCTTGCAAGAGTTTCACGAAGAGCAAACACGCTATCCTCCCTTTCATTTGGCACCCTTACTCTGGCATGCTGAGTAGAAGGTCGCCTAATCCTTGAAGAATCTGCAGACTCCTGAATACTTCTGCTACTAGTCCGTGTTTGCTGAGAAGCTGATTGTTCAGCAGTTCTGACTCTAGGACCAGTGATACCAGAATACATGGCAGGTGAATGGCCTAAACTAGAGTGTCCATTTAAGCCCCTTGGTCTAGAAGAACTCTCTCCGTCAAATGCCCTGTTTCTCATAACCTCAGCCCTCTTATTATGAATAGAATTAGCTGAAGAACAGCCAGAAGGCAAAACATCAGATATTGATGTGCAGCCAAGGTTTTTTAGAGTACGTCTCTGTACCCCAGGGCCAGCAGCATTTGATGATTTCACACCATTGGTAGAATTTCGAGGTATAGTGGACCGATTAACAAAAGCAGAAGCAGTTTGAGGTCTAATCTGACACAATTCTTCTTTACCCTTCTGCTGACGTGATTTAGATCTCAAAGCAGCATTTCTGACTACAGAACCAATTGCATGTGCAGACACCCCTGAAGAAACAGAAGAATCTAATAGTTCAGGATCAAGTTCTGCAGGCTGATCTTCAGTAGTTGATGTGGACAACAAATCTTCTGGCTCATCCTGCTGACCATATGGATGCACATCCTCCTCAACAACAGCTTTCTTGCTACACTGCAGACGGTTGGCCTCAGTTCTTCTGCTACTACTTTCTGCATTATCTGCCTCTCCTAAAAATGTCCGTCCTTGTTTTTCCTCGAAATATTTTCTGACGGGAGCTTTTGAAGAGCTTGGACATGCAGCCTTAGTGCCTGATGAACGAAATGGCTCACGTAAATATCTTGGCTTCTCCTTACTGTCAGCCCACCTGGCATTCATTGGGTTGAGTTTTGTCTTGTTTGGCCTCTCCTCATTGCCTTGATCTTTTAAGGAGACACTAGAGCCTCTTCTAAGAAAACCAGTTGTTGATATTGATCTACCAGAATCTTCCTCCATACCAAAACAGAGTACAGCACAAGGAGATGTATATCTTCTCTAGTACAACTTGTGCTAAAGTTCTGCAACCACAAGTTTTTAAAGGTTAGGAAACCAACAACACCACAGAACTAATGTTTCCGCAAAATAATAAGAATGGAAACCTAGACATACATGAAAGCAGCGTATCTAGAAGTGATACAGTTGAGGTGAGAAAATGTGAAGAAGGTTATATCACCTTCACACCTACTGTTAGTTATTGTCAACATTTTACTCCACTCCATGCATGAGAGCCATAGTTACATTCCCTCTTCTGAATTTCTAAAATTGCATTGCATTGCTATTGCTACAAGGTCTGTCTCCACAATTTCATTTCTTTCTTTCTTTTTTAGCTTATCAAAAAGGGAAAAAAAAGTGACGCGTATACTTGTTATAATAATATTATTTTTGTTTCCCACAATGAGGAACAGTGAAAAAAAGTGCCAATTGCCTTGCGACTTATATCATCCAGCCAATTAAAATTATCACAGAATGACACAGTTATACTGACCAAAAATTGTATAGCAGCATCGATTGCCATATTATGACTCGGAATTTAGCTGATCATAACACCATAAAATGGAGGTTCAATTCAGTTGAACCCCAAAAATTTTTTTGGGGGAAACAAACTGTTACTTGTATTAAGGTTAAGGCTCTGAAATTAAGAGAAAAAAACTTCTCCCAGATCTAGAAGCGAAGCAGCTAGGGTTAACGCACGCAAGCAAAAATTCAAGACAAAAGTGGGTGGTGGGACAGAGTCACGGAGAGATGAATGAGAGAAAGAGAGGATGCGGATGCTCACCGGGACTCAGCCCGACGACGGCGCCCCCCTCCCCTGCTCCTGCTCCCTACTCCTGCTCTGCTCGTGAGATGGATATCGGCGCAGCCGCCGCAGAGACGACGGGACCCGTAAGGAGGCCGGCCGCGTCGGCGTCGGCCCTCCAAACCTGCTCGTCGTCGTCGGCCGTGTGGCGCGTGCGCGCGCGAGGAGGGAGAAGGGCTAGTGCGGGTGGTCCGGAAGGCGACGAGACCAAACGGCGGCGAAGGCGGCGGCGGCGGCGGCGACGACCTTTGCCCTCTCTCTCTCTCTTCTTCCTCGCGAGGCGGAAATGGAGACGAC
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| CDS seq | ATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAATCACGTCAGCAGAAGGGTAAAGAAGAATTGTGTCAGATTAGACCTCAAACTGCTTCTGCTTTTGTTAATCGGTCCACTATACCTCGAAATTCTACCAATGGTGTGAAATCATCAAATGCTGCTGGCCCTGGGGTACAGAGACGTACTCTAAAAAACCTTGGCTGCACATCAATATCTGATGTTTTGCCTTCTGGCTGTTCTTCAGCTAATTCTATTCATAATAAGAGGGCTGAGGTTATGAGAAACAGGGCATTTGACGGAGAGAGTTCTTCTAGACCAAGGGGCTTAAATGGACACTCTAGTTTAGGCCATTCACCTGCCATGTATTCTGGTATCACTGGTCCTAGAGTCAGAACTGCTGAACAATCAGCTTCTCAGCAAACACGGACTAGTAGCAGAAGTATTCAGGAGTCTGCAGATTCTTCAAGGATTAGGCGACCTTCTACTCAGCATGCCAGAGTAAGGGTGCCAAATGAAAGGGAGGATAGCGTGTTTGCTCTTCGTGAAACTCTTGCAAGGGATCGCCAACCAGAATGGGCTCATTTCTCCTTGGGTGAAGCTGCCCCACGGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGCCTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGA
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| Protein seq | MEEDSGRSISTTGFLRRGSSVSLKDQGNEERPNKTKLNPMNARWADSKEKPRYLREPFRSSGTKAACPSSSKAPVRKYFEEKQGRTFLGEADNAESSSRRTEANRLQCSKKAVVEEDVHPYGQQDEPEDLLSTSTTEDQPAELDPELLDSSVSSGVSAHAIGSVVRNAALRSKSRQQKGKEELCQIRPQTASAFVNRSTIPRNSTNGVKSSNAAGPGVQRRTLKNLGCTSISDVLPSGCSSANSIHNKRAEVMRNRAFDGESSSRPRGLNGHSSLGHSPAMYSGITGPRVRTAEQSASQQTRTSSRSIQESADSSRIRRPSTQHARVRVPNEREDSVFALRETLARDRQPEWAHFSLGEAAPRRSMRPFSMELPHEIYSSSRQGSSNQTARSRSSYRPDESPPQMFHGLLVERENYRRINMEGIAEVLLALDRIEQDDELTYEQLLVLETNLFLSGLGLHDQHRDMRMDIDNMSYEELLALEERIGSVSTALSDEQLVKCLKRNVYKLPNSDLEANRAVLDDAKCSICQEEYIEGEEVGRMQCEHQYHVSCIHEWLRQKNWCPICKTSAIPSEMDKGGT |
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| Function | Probable E3 ubiquitin-protein ligase HIP1 [UniProtKB/Swiss-Prot:Q7XTV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g48040 | LOC_Os06g48040.1 | Chr06 | 29059687 | 29063780 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGAAGATTCTGGTAGATCAATATCAACAACTGGTTTTCTTAGAAGAGGCTCTAGTGTCTCCTTAAAAGATCAAGGCAATGAGGAGAGGCCAAACAAGACAAAACTCAACCCAATGAATGCCAGGTGGGCTGACAGTAAGGAGAAGCCAAGATATTTACGTGAGCCATTTCGTTCATCAGGCACTAAGGCTGCATGTCCAAGCTCTTCAAAAGCTCCCGTCAGAAAATATTTCGAGGAAAAACAAGGACGGACATTTTTAGGAGAGGCAGATAATGCAGAAAGTAGTAGCAGAAGAACTGAGGCCAACCGTCTGCAGTGTAGCAAGAAAGCTGTTGTTGAGGAGGATGTGCATCCATATGGTCAGCAGGATGAGCCAGAAGATTTGTTGTCCACATCAACTACTGAAGATCAGCCTGCAGAACTTGATCCTGAACTATTAGATTCTTCTGTTTCTTCAGGGGTGTCTGCACATGCAATTGGTTCTGTAGTCAGAAATGCTGCTTTGAGATCTAAATCACGTCAGCAGAAGGGTAAAGAAGAATTGTGTCAGATTAGACCTCAAACTGCTTCTGCTTTTGTTAATCGGTCCACTATACCTCGAAATTCTACCAATGGTGTGAAATCATCAAATGCTGCTGGCCCTGGGGTACAGAGACGTACTCTAAAAAACCTTGGCTGCACATCAATATCTGATGTTTTGCCTTCTGGCTGTTCTTCAGCTAATTCTATTCATAATAAGAGGGCTGAGGTTATGAGAAACAGGGCATTTGACGGAGAGAGTTCTTCTAGACCAAGGGGCTTAAATGGACACTCTAGTTTAGGCCATTCACCTGCCATGTATTCTGGTATCACTGGTCCTAGAGTCAGAACTGCTGAACAATCAGCTTCTCAGCAAACACGGACTAGTAGCAGAAGTATTCAGGAGTCTGCAGATTCTTCAAGGATTAGGCGACCTTCTACTCAGCATGCCAGAGTAAGGGTGCCAAATGAAAGGGAGGATAGCGTGTTTGCTCTTCGTGAAACTCTTGCAAGGGATCGCCAACCAGAATGGGCTCATTTCTCCTTGGGTGAAGCTGCCCCACGGAGATCGATGAGGCCTTTTTCTATGGAATTACCACATGAGATATACTCATCTAGTCGTCAAGGCTCAAGTAATCAGACAGCAAGGAGCAGATCAAGTTACCGCCCTGACGAAAGCCCTCCACAAATGTTTCATGGTTTGCTGGTGGAGAGAGAGAACTACAGGCGTATAAACATGGAAGGCATCGCTGAGGTGTTGCTAGCATTGGACAGGATTGAACAAGATGATGAATTGACTTATGAGCAATTGCTGGTGCTAGAAACTAACTTGTTTCTTAGCGGCCTTGGCCTGCATGACCAGCACAGAGATATGAGAATGGATATTGACAACATGTCTTATGAGGAACTATTAGCACTAGAGGAGCGAATCGGTTCTGTCAGCACTGCCCTATCTGATGAGCAGCTTGTGAAGTGTCTCAAGCGAAATGTGTATAAGTTACCAAATTCAGATCTTGAAGCGAACAGAGCTGTACTAGATGACGCCAAGTGCAGCATATGTCAGGAGGAATACATTGAGGGCGAAGAAGTTGGTAGGATGCAGTGTGAGCATCAATACCATGTGTCCTGCATTCATGAATGGCTTAGACAGAAGAACTGGTGTCCAATATGCAAAACTTCAGCAATACCTTCAGAGATGGACAAGGGGGGCACATGA
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| Protein seq | MEEDSGRSISTTGFLRRGSSVSLKDQGNEERPNKTKLNPMNARWADSKEKPRYLREPFRSSGTKAACPSSSKAPVRKYFEEKQGRTFLGEADNAESSSRRTEANRLQCSKKAVVEEDVHPYGQQDEPEDLLSTSTTEDQPAELDPELLDSSVSSGVSAHAIGSVVRNAALRSKSRQQKGKEELCQIRPQTASAFVNRSTIPRNSTNGVKSSNAAGPGVQRRTLKNLGCTSISDVLPSGCSSANSIHNKRAEVMRNRAFDGESSSRPRGLNGHSSLGHSPAMYSGITGPRVRTAEQSASQQTRTSSRSIQESADSSRIRRPSTQHARVRVPNEREDSVFALRETLARDRQPEWAHFSLGEAAPRRSMRPFSMELPHEIYSSSRQGSSNQTARSRSSYRPDESPPQMFHGLLVERENYRRINMEGIAEVLLALDRIEQDDELTYEQLLVLETNLFLSGLGLHDQHRDMRMDIDNMSYEELLALEERIGSVSTALSDEQLVKCLKRNVYKLPNSDLEANRAVLDDAKCSICQEEYIEGEEVGRMQCEHQYHVSCIHEWLRQKNWCPICKTSAIPSEMDKGGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.247902 | 0.353949 | 0.642944 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0695600 | RBH | 0.369076 | 0.529833 | 2.514640 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05692 | RBH | 0.679572 | 0.039258 | 0.993081 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0695600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027610 | RBH | 0.230938 | 20.640074 | 5.597983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027400 | RBH | 0.427121 | 9.861453 | 1.839820 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027550 | RBH | 0.939104 | 21.969221 | 8.375306 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027120 | RBH | 0.108115 | 0.298225 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027630 | RBH | 5.130743 | 15.607538 | 9.406216 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0458300 | RBH | 14.0685265 | 49.0487595 | 49.185732 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027020 | RBH | 0.261847 | 1.708276 | 1.295344 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0441200 | RBH | 15.8982855 | 51.1945285 | 14.83696 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027510 | RBH | 0.163598 | 0.376956 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027580 | RBH | 0.137040 | 12.776741 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027170 | RBH | 10.946349 | 30.356810 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027820 | RBH | 0.448246 | 2.899445 | 1.171487 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027440 | RBH | 0.273164 | 14.644106 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027350 | RBH | 0.635892 | 4.372963 | 3.234626 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027430 | RBH | 1.213672 | 23.177574 | 2.805675 |
