Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g47950 | OGI:06081590 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:28995477-28997357 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTAAACCAATGTTACTTCATTGAATAGATATGCGTTTTACATCTGTGTATCATAGAATTGTCGGATTTTCAGTGCATTTCCTTGGCAAGGGCAAATGTTCTGATAAAACTAGAAACATCAGCCTCTTCAGTGGAACCTGGCACCACAAAATTCCTATTAGGGTAGTACCAAAGCTCTTCATAATTTCAAGGTTAGCCATATCTATGCTTCTCAAATTGACCACAGGCCAACTCCTTATCCCCATTGTTTTCCTTGCTGATACGAGTTTAGTCATTGCAATATTTCACCCTTTAAAGGCCTTGACATCACAGTTCATCAAACAATTGTATTGGCCTTATTAAGAAATTGAGGCTTGCGGTTTTTATGCAATCAAATTTCACAGGAAACAATTAAAAATGTTTCCTTAAAAATAACCAATCATGGCTTCAGGCAGCCTCTTCATCACATTGATGTTCATCCAATTGGGCTGCCTTCATCATTTGCCTAATCTCCTCAAGCTTTTCGAATTCCCGCTTCCGCTTCAAAAACCCTTCCAAAACCCTAAAAGCTCGTTCTGTAGGAGTCATCCCCATCTCAATCATCTCCCTAAAACACCTGTATGCTTCCAAAACCACACCTCTGCAGCATAAACCAGTGACCAGAACATCCAATGCATGCCGGTGAGGCACACATCCCTTCCCCAGCAGATAATCCCACAGCTCTAGCCCAAGATCTGGTCGTGCATTCTCGCAGAAGACCTTCATAAGCAACATTGTTGTCCTAGTCCTCGGCATGAACCCTGAACCAACCATCTTGCTATACACTTTCCAGATGCCCTCCAAATCCCCAATTCTCTGAAATCCACACAACATTGTATTGTAGCTAACGTCATCCAGACCAATCCCCTTGCGCTCCATCTCGCTCATGACTGTCATCCCAGACTGCAAGTCTCTCGCCCTAACATATGCGCCCATGAGCGCATTGTGAGCGCCACGGTCTGGGGTCACTCCCCACTGCCCCATTTCATCGAAAAGCTGGCGCGCACGTATCGCATTCCTCACAATCCCAGCTCCATAGATCAGCGTGGTGAACACCTGCAGTGTCGGCCTGCAGTTCTCCCGCTTACGCATTTCGTCGAGCAGGTCGAGGGCGTCCAAGAATCTCCCTTTCTTGCAGTAGGCGTCCATCCTCACGCAGTACGACACGGCGTCCGGCACGAAGCCGCGAAGCACGGCGTCATGGTAGAACAGGTCCAGCGCCTGGGCGTTCCCTGCCTCCTTGAATCCGAGCAGCAGCGTGTTGAACGTGCGTGCGTCGGGCGGGTACGCGTCGCAGTACCGGTGGAACAGCGCGCGGGCCTCGGCGACGCGGCCGCGGGCGCAGAACGCGCGGAGCAGCGCGTTGAGCTCGGCGACCCCGAACTCGCGCCCGGCGCGCGCCCACACGCGCGCGGCGGAGTCGAAGCAGGTGACAGCGGCGTCGAAGGACGCGCCCGGGGCGGACGCGGAGAGCGCGGTGGAGAGGAGCACCGCGAGCGCCGGAGTGGAGAGGAGGTGCGGGTGCGTGGGCGGGAGGGAGTCGAGCAGGCGGAACGAGAGGACGGCGTGGCGGCGGGAGCGCGCGAGGAGGCGGAGGAGGGCGGGGAGGGAGGCCTCCGGGACGGGGAAGCCCGGGAGGGCGAGGAGGCGGCGGAAGAGGGAGAGCGCCGGGAGGGGCGGGGAGTGGGAGAGGAGGAGGTGGGAGAGGAGCGGCGTGAGGAGAGGCGGCGAGGCCTGGAGTATCGCGAGGAGGAGCGGCGGGGTCTCCGGCGCGCCGGCGAGGAGGGTGCGCGCGAGGTGGGGCACGGTCGGGGCGAGCAGCGGGCGGGCGGCGCTCGGCGGCGGCGCCAGCAAGAGGGGCAT
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| CDS seq | ATGCCCCTCTTGCTGGCGCCGCCGCCGAGCGCCGCCCGCCCGCTGCTCGCCCCGACCGTGCCCCACCTCGCGCGCACCCTCCTCGCCGGCGCGCCGGAGACCCCGCCGCTCCTCCTCGCGATACTCCAGGCCTCGCCGCCTCTCCTCACGCCGCTCCTCTCCCACCTCCTCCTCTCCCACTCCCCGCCCCTCCCGGCGCTCTCCCTCTTCCGCCGCCTCCTCGCCCTCCCGGGCTTCCCCGTCCCGGAGGCCTCCCTCCCCGCCCTCCTCCGCCTCCTCGCGCGCTCCCGCCGCCACGCCGTCCTCTCGTTCCGCCTGCTCGACTCCCTCCCGCCCACGCACCCGCACCTCCTCTCCACTCCGGCGCTCGCGGTGCTCCTCTCCACCGCGCTCTCCGCGTCCGCCCCGGGCGCGTCCTTCGACGCCGCTGTCACCTGCTTCGACTCCGCCGCGCGCGTGTGGGCGCGCGCCGGGCGCGAGTTCGGGGTCGCCGAGCTCAACGCGCTGCTCCGCGCGTTCTGCGCCCGCGGCCGCGTCGCCGAGGCCCGCGCGCTGTTCCACCGGTACTGCGACGCGTACCCGCCCGACGCACGCACGTTCAACACGCTGCTGCTCGGATTCAAGGAGGCAGGGAACGCCCAGGCGCTGGACCTGTTCTACCATGACGCCGTGCTTCGCGGCTTCGTGCCGGACGCCGTGTCGTACTGCGTGAGGATGGACGCCTACTGCAAGAAAGGGAGATTCTTGGACGCCCTCGACCTGCTCGACGAAATGCGTAAGCGGGAGAACTGCAGGCCGACACTGCAGGTGTTCACCACGCTGATCTATGGAGCTGGGATTGTGAGGAATGCGATACGTGCGCGCCAGCTTTTCGATGAAATGGGGCAGTGGGGAGTGACCCCAGACCGTGGCGCTCACAATGCGCTCATGGGCGCATATGTTAGGGCGAGAGACTTGCAGTCTGGGATGACAGTCATGAGCGAGATGGAGCGCAAGGGGATTGGTCTGGATGACGTTAGCTACAATACAATGTTGTGTGGATTTCAGAGAATTGGGGATTTGGAGGGCATCTGGAAAGTGTATAGCAAGATGGTTGGTTCAGGGTTCATGCCGAGGACTAGGACAACAATGTTGCTTATGAAGGTCTTCTGCGAGAATGCACGACCAGATCTTGGGCTAGAGCTGTGGGATTATCTGCTGGGGAAGGGATGTGTGCCTCACCGGCATGCATTGGATGTTCTGGTCACTGGTTTATGCTGCAGAGGTGTGGTTTTGGAAGCATACAGGTGTTTTAGGGAGATGATTGAGATGGGGATGACTCCTACAGAACGAGCTTTTAGGGTTTTGGAAGGGTTTTTGAAGCGGAAGCGGGAATTCGAAAAGCTTGAGGAGATTAGGCAAATGATGAAGGCAGCCCAATTGGATGAACATCAATGTGATGAAGAGGCTGCCTGA
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| Protein seq | MPLLLAPPPSAARPLLAPTVPHLARTLLAGAPETPPLLLAILQASPPLLTPLLSHLLLSHSPPLPALSLFRRLLALPGFPVPEASLPALLRLLARSRRHAVLSFRLLDSLPPTHPHLLSTPALAVLLSTALSASAPGASFDAAVTCFDSAARVWARAGREFGVAELNALLRAFCARGRVAEARALFHRYCDAYPPDARTFNTLLLGFKEAGNAQALDLFYHDAVLRGFVPDAVSYCVRMDAYCKKGRFLDALDLLDEMRKRENCRPTLQVFTTLIYGAGIVRNAIRARQLFDEMGQWGVTPDRGAHNALMGAYVRARDLQSGMTVMSEMERKGIGLDDVSYNTMLCGFQRIGDLEGIWKVYSKMVGSGFMPRTRTTMLLMKVFCENARPDLGLELWDYLLGKGCVPHRHALDVLVTGLCCRGVVLEAYRCFREMIEMGMTPTERAFRVLEGFLKRKREFEKLEEIRQMMKAAQLDEHQCDEEAA |
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| Function | Pentatricopeptide repeat-containing protein At3g61360 [UniProtKB/Swiss-Prot:Q9M2C8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g47950 | LOC_Os06g47950.1 | Chr06 | 28995477 | 28997357 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCCCTCTTGCTGGCGCCGCCGCCGAGCGCCGCCCGCCCGCTGCTCGCCCCGACCGTGCCCCACCTCGCGCGCACCCTCCTCGCCGGCGCGCCGGAGACCCCGCCGCTCCTCCTCGCGATACTCCAGGCCTCGCCGCCTCTCCTCACGCCGCTCCTCTCCCACCTCCTCCTCTCCCACTCCCCGCCCCTCCCGGCGCTCTCCCTCTTCCGCCGCCTCCTCGCCCTCCCGGGCTTCCCCGTCCCGGAGGCCTCCCTCCCCGCCCTCCTCCGCCTCCTCGCGCGCTCCCGCCGCCACGCCGTCCTCTCGTTCCGCCTGCTCGACTCCCTCCCGCCCACGCACCCGCACCTCCTCTCCACTCCGGCGCTCGCGGTGCTCCTCTCCACCGCGCTCTCCGCGTCCGCCCCGGGCGCGTCCTTCGACGCCGCTGTCACCTGCTTCGACTCCGCCGCGCGCGTGTGGGCGCGCGCCGGGCGCGAGTTCGGGGTCGCCGAGCTCAACGCGCTGCTCCGCGCGTTCTGCGCCCGCGGCCGCGTCGCCGAGGCCCGCGCGCTGTTCCACCGGTACTGCGACGCGTACCCGCCCGACGCACGCACGTTCAACACGCTGCTGCTCGGATTCAAGGAGGCAGGGAACGCCCAGGCGCTGGACCTGTTCTACCATGACGCCGTGCTTCGCGGCTTCGTGCCGGACGCCGTGTCGTACTGCGTGAGGATGGACGCCTACTGCAAGAAAGGGAGATTCTTGGACGCCCTCGACCTGCTCGACGAAATGCGTAAGCGGGAGAACTGCAGGCCGACACTGCAGGTGTTCACCACGCTGATCTATGGAGCTGGGATTGTGAGGAATGCGATACGTGCGCGCCAGCTTTTCGATGAAATGGGGCAGTGGGGAGTGACCCCAGACCGTGGCGCTCACAATGCGCTCATGGGCGCATATGTTAGGGCGAGAGACTTGCAGTCTGGGATGACAGTCATGAGCGAGATGGAGCGCAAGGGGATTGGTCTGGATGACGTTAGCTACAATACAATGTTGTGTGGATTTCAGAGAATTGGGGATTTGGAGGGCATCTGGAAAGTGTATAGCAAGATGGTTGGTTCAGGGTTCATGCCGAGGACTAGGACAACAATGTTGCTTATGAAGGTCTTCTGCGAGAATGCACGACCAGATCTTGGGCTAGAGCTGTGGGATTATCTGCTGGGGAAGGGATGTGTGCCTCACCGGCATGCATTGGATGTTCTGGTCACTGGTTTATGCTGCAGAGGTGTGGTTTTGGAAGCATACAGGTGTTTTAGGGAGATGATTGAGATGGGGATGACTCCTACAGAACGAGCTTTTAGGGTTTTGGAAGGGTTTTTGAAGCGGAAGCGGGAATTCGAAAAGCTTGAGGAGATTAGGCAAATGATGAAGGCAGCCCAATTGGATGAACATCAATGTGATGAAGAGGCTGCCTGA
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| Protein seq | MPLLLAPPPSAARPLLAPTVPHLARTLLAGAPETPPLLLAILQASPPLLTPLLSHLLLSHSPPLPALSLFRRLLALPGFPVPEASLPALLRLLARSRRHAVLSFRLLDSLPPTHPHLLSTPALAVLLSTALSASAPGASFDAAVTCFDSAARVWARAGREFGVAELNALLRAFCARGRVAEARALFHRYCDAYPPDARTFNTLLLGFKEAGNAQALDLFYHDAVLRGFVPDAVSYCVRMDAYCKKGRFLDALDLLDEMRKRENCRPTLQVFTTLIYGAGIVRNAIRARQLFDEMGQWGVTPDRGAHNALMGAYVRARDLQSGMTVMSEMERKGIGLDDVSYNTMLCGFQRIGDLEGIWKVYSKMVGSGFMPRTRTTMLLMKVFCENARPDLGLELWDYLLGKGCVPHRHALDVLVTGLCCRGVVLEAYRCFREMIEMGMTPTERAFRVLEGFLKRKREFEKLEEIRQMMKAAQLDEHQCDEEAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.338889 | 0.179052 | 0.081662 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0694600 | RBH | 0.537837 | 0.309971 | 0.281105 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05720 | SBH | 0.282516 | 0.230334 | 0.089298 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0694600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027530 | RBH | 0.103470 | 0.0 | 0.663339 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027330 | RBH | 0.272344 | 0.0 | 0.764069 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027470 | RBH | 0.119552 | 0.0 | 0.795000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027040 | RBH | 0.031435 | 0.031409 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027550 | RBH | 1.982350 | 0.0 | 0.602106 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0457300 | RBH | 0.6187025 | 0.636109 | 0.2351325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026940 | RBH | 0.145008 | 0.0 | 0.065625 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0439800 | RBH | 0.6255475 | 0.3986335 | 0.966891 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027440 | RBH | 0.044090 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027510 | RBH | 0.194250 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027730 | RBH | 0.0 | 0.0 | 0.122582 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027270 | RBH | 0.166969 | 0.472036 | 0.188947 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027350 | RBH | 0.228759 | 0.0 | 0.417951 |
