Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g47150 | OGI:06080410 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:28586445-28590358 | ||||||||
| Gene Symbol | ARF10, OsARF10, OsARF18, ARF18 | ||||||||||
| DNA seq | AGTGGGTAGTAGTAGAAGTACTTGCTTAAGCTCCTCTTCTTCCCTTGACTCCTCTTCTCCTCTCTTTCTCTCTCCTTTCCCCTCTCTCTCTCTCTCTATTTAGTTCTTTTGCCCCCATGTCAGCTGCAGTCTGGGGGAATCTGAGGCTGCTGCTCACCTGAGAGACTGAAAGGAGGCAGAAGCAGCAGCAGCATCAGCATCAGCAGCAGAGCAGATAGCTGAGCTGCAGAGGGGGAGGAGAGAAGATAGTAGTGGTAGTAGTAGCTGAGCTGTGTCAAGATTGCCCTTCAAATTCATCATCTTTTGCTCTTGTGAGAAAAGGTGAGTAGTGGTTTCTGGGTTGCGTCTCCCTTTTTCTGCAAGATTTCTGAGCCAAAATTCTCTCTTTTGCTCGCTTTGTTCCCTTTTCTTTCTTTTCTTTTTTTCCCTTCTTCCTCCTTTCTGCTCTGCTGGTTGGTTGGTTCTTTCTCCTCCCCCAGCCTTTTTCAGCTATGAGCTCTGATTGATGATGACGATGATGGCGGCTGTGCAGCTGAAAAGCTTCTTCACCTTGTGGTAGTGGTAAAAGCTGTGGGAAATTTCATCCATAAAGATCGCCGTGGCGCTCGAATTCCGCTGAATTTTGTTTGTGCTCGAGCTGATCGGTGGAGGTGAAAGATTTTTGCGTCGAAGAGATGATAACTTTCGTGGATTCCGCGGCGAAGGAGCGGGAGCGGGAGAGTGACAAGTGCTTGGACCCGCAGCTGTGGCACGCCTGCGCCGGCGGCATGGTCCAGATGCCGCCGGTGAGCTCCAAGGTGTACTACTTCCCGCAAGGCCACGCCGAGCACGCGCAGGGGCATGGCCCCGTCGAGTTCCCGGGCGGGCGCGTCCCGGCGCTCGTGCTCTGCCGCGTCGCGGGCGTCAGGTTCATGGCCGATCCGGACACCGACGAGGTGTTCGCCAAGATCCGCCTCGTCCCCGTCCGCGCCAACGAGCAGGGCTACGCCGGTGACGCCGACGACGGCATTGGCGCCGCCGCGGCCGCGGCGGCGCAGGAGGAGAAGCCCGCGTCGTTCGCCAAGACGCTCACGCAGTCCGACGCCAACAACGGCGGGGGGTTCTCCGTGCCGCGCTACTGCGCCGAGACCATCTTCCCGCGTCTCGACTACTCCGCCGATCCCCCCGTCCAGACCGTCCTCGCCAAGGACGTCCATGGCGTGGTCTGGAAGTTCCGCCACATCTACCGCGGCACGCCGAGGCGCCACCTCCTCACCACGGGGTGGAGCACCTTCGTGAACCAGAAGAAGCTCGTCGCCGGCGACTCCATCGTGTTCATGCGCACCGAGAACGGGGATCTCTGCGTCGGCATCCGCCGCGCCAAGAAAGGGGGCGTGGGAGGCCCGGAGTTCCTGCCGCCGCCGCCGCCGCCGCCGCCGACACCTGCCGCCGGCGGCAATTACGGCGGGTTCTCCATGTTCCTGAGGGGCGACGACGACGGCAACAAGATGGCGGCGGCGGCCAGGGGCAAGGTCAGAGCCCGTGTCCGGCCAGAGGAGGTCGTCGAGGCGGCCAATCTCGCCGTGAGCGGGCAACCATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGTCAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTACAATCCAGTTCTGAATTCTCTGTCTCAAAGTGCACTGTCCTATGAAGGACTACTGCAACTGCAAACAAAATGTTCCAGTAGCATTATTGGTATTCAGGATCGTGTCCATGGTTTGTTGCTTGCATTGATGTTTTGGGAATGGCTTTTGCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTATCGCCCCACGGCCTTCACCAGCTTGATCACGGCATGCAGCCGAGGATCGCCGCTGGTCTAATTATCGGTCATCCGGCTGCTCGGGATGATATCTCATGCTTGTTGACCATTGGTAGCCCCCAGAACAACAAGAAATCAGATGGCAAGAAGGCGCCAGCCCAGCTGATGCTTTTCGGAAAACCCATACTCACAGAGCAGCAGATATCCTTGGGTGATGCTGCTTCGGTGGATGTTAAGAAGAGCTCTTCTGATGGTAATGCTGAAAATACGGTGAATAAGAGTAACTCCGATGTTTCAAGCCCGAGAAGTAATCAGAATGGCACCACAGATAATTTGTCATGTGGAGGAGTTCCATTGTGCCAAGACAACAAGGTACTTGATGTTGGGCTGGAAACAGGGCACTGCAAGGTATTCATGCAGTCGGAGGATGTCGGGCGCACACTTGATCTCTCTGTTGTTGGTTCATATGAGGAATTATACCGGCGGCTTGCTGACATGTTCGGCATCGAGAAAGCTGAGCTGATGAGTCATGTTTTCTACCGTGATGCGGCTGGGGCACTCAAGCACACTGGAGATGAACCTTTCAGGTCAGTCCAGTTTTAGATTATTGTTATAGTTTGTTCAAGCAGAATACTTCCTGTTTTATGAATTGGTTAGTTATTTAGTCATGTCCACTCATCAAATAGAAGGCCGTTTATCCTATTTTCTCGGGTTTTATGCTGTAAACAAATCATTAATGCGCTGGTACTTACTTCAAATTTTCCCTAGGGTCATCTGATAAGATGCATATGGTAACCTTTATAACTCCATTTAAATTGGCTAATGGCTATCATTTTAAGAACATTGAAATGTCCACATTGTCGTAGTTGTGATATTTCTAGGCTTTTAAGTGGTATATTTAAGTTAGCTTAACTTGAAGCACCCAAACTCTAGGTCTTCTTGCCTTGGAAGCATCCATATGGTACATTGACTTTAGAGGAGTTCCAAGCTGGGACACCAAAACACCTTCTATCCATTATGTCCAAGAAACCATCGTTCTCAATTCGTGTTTGCTACAGTTCTTTCTTCCTTGTGTACCGAACATAATACTTGATGGACTAAAGTACCTGTTCTGAATTTGCAGCGAGTTCACGAAGACGGCGCGTAGGCTGAATATACTAACAGATACAAGCGGCGATAACTTAGCGAGGTAGGGTAAATTAAAGCTATTCTCAATTGTACAGCTGGTGGAGCACGGTGGCAATTTTGAAGGCAAAAATTGCCGGTTTCCTAGTACTGGTGCAATTTCAAGGAGGCAATTCAGTTTTCTTTAATTAGAGCTCCCAGAATGGGATTGACTGTAATCCGGTACCCATATTTATCGGCAGATTTACCAGACTGGATCTATCCTACTGTCATGTAAACCGATCATATTGCATTTGATCGTTGGTGTGTACTCGGCCATGAACCGTTACTAAACGAATGCGATTACGGGAATTTTTGCGCGCAAATGCGTTGAATTGTCTGAAAAAAAAAACTACATCTGCATGCTCTGTTTGTAGTACTTCATCATACCAAAGAATCGAAGAAGTGGAGTCAGAATGGCCCAAAATTTGTGTGTGTCACTGAATTTGGAATTGAAATTTTGCAAGATTGTACTA
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| CDS seq | ATGATAACTTTCGTGGATTCCGCGGCGAAGGAGCGGGAGCGGGAGAGTGACAAGTGCTTGGACCCGCAGCTGTGGCACGCCTGCGCCGGCGGCATGGTCCAGATGCCGCCGGTGAGCTCCAAGGTGTACTACTTCCCGCAAGGCCACGCCGAGCACGCGCAGGGGCATGGCCCCGTCGAGTTCCCGGGCGGGCGCGTCCCGGCGCTCGTGCTCTGCCGCGTCGCGGGCGTCAGGTTCATGGCCGATCCGGACACCGACGAGGTGTTCGCCAAGATCCGCCTCGTCCCCGTCCGCGCCAACGAGCAGGGCTACGCCGGTGACGCCGACGACGGCATTGGCGCCGCCGCGGCCGCGGCGGCGCAGGAGGAGAAGCCCGCGTCGTTCGCCAAGACGCTCACGCAGTCCGACGCCAACAACGGCGGGGGGTTCTCCGTGCCGCGCTACTGCGCCGAGACCATCTTCCCGCGTCTCGACTACTCCGCCGATCCCCCCGTCCAGACCGTCCTCGCCAAGGACGTCCATGGCGTGGTCTGGAAGTTCCGCCACATCTACCGCGGCACGCCGAGGCGCCACCTCCTCACCACGGGGTGGAGCACCTTCGTGAACCAGAAGAAGCTCGTCGCCGGCGACTCCATCGTGTTCATGCGCACCGAGAACGGGGATCTCTGCGTCGGCATCCGCCGCGCCAAGAAAGGGGGCGTGGGAGGCCCGGAGTTCCTGCCGCCGCCGCCGCCGCCGCCGCCGACACCTGCCGCCGGCGGCAATTACGGCGGGTTCTCCATGTTCCTGAGGGGCGACGACGACGGCAACAAGATGGCGGCGGCGGCCAGGGGCAAGGTCAGAGCCCGTGTCCGGCCAGAGGAGGTCGTCGAGGCGGCCAATCTCGCCGTGAGCGGGCAACCATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGTCAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTATCGCCCCACGGCCTTCACCAGCTTGATCACGGCATGCAGCCGAGGATCGCCGCTGGTCTAATTATCGGTCATCCGGCTGCTCGGGATGATATCTCATGCTTGTTGACCATTGGTAGCCCCCAGAACAACAAGAAATCAGATGGCAAGAAGGCGCCAGCCCAGCTGATGCTTTTCGGAAAACCCATACTCACAGAGCAGCAGATATCCTTGGGTGATGCTGCTTCGGTGGATGTTAAGAAGAGCTCTTCTGATGGTAATGCTGAAAATACGGTGAATAAGAGTAACTCCGATGTTTCAAGCCCGAGAAGTAATCAGAATGGCACCACAGATAATTTGTCATGTGGAGGAGTTCCATTGTGCCAAGACAACAAGGTACTTGATGTTGGGCTGGAAACAGGGCACTGCAAGGTATTCATGCAGTCGGAGGATGTCGGGCGCACACTTGATCTCTCTGTTGTTGGTTCATATGAGGAATTATACCGGCGGCTTGCTGACATGTTCGGCATCGAGAAAGCTGAGCTGATGAGTCATGTTTTCTACCGTGATGCGGCTGGGGCACTCAAGCACACTGGAGATGAACCTTTCAGCGAGTTCACGAAGACGGCGCGTAGGCTGAATATACTAACAGATACAAGCGGCGATAACTTAGCGAGGTAG
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| Protein seq | MITFVDSAAKERERESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVEFPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFLPPPPPPPPTPAAGGNYGGFSMFLRGDDDGNKMAAAARGKVRARVRPEEVVEAANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLAPFSPPRKKLCVPLYPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGARHAQFGISLSDLHLNKLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIGSPQNNKKSDGKKAPAQLMLFGKPILTEQQISLGDAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSGDNLAR |
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| Function | Auxin response factor 18 [UniProtKB/Swiss-Prot:Q653H7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g47150 | LOC_Os06g47150.1 | Chr06 | 28586445 | 28590358 | + | MSU_osa1r7 | ||
| CDS seq | ATGATAACTTTCGTGGATTCCGCGGCGAAGGAGCGGGAGCGGGAGAGTGACAAGTGCTTGGACCCGCAGCTGTGGCACGCCTGCGCCGGCGGCATGGTCCAGATGCCGCCGGTGAGCTCCAAGGTGTACTACTTCCCGCAAGGCCACGCCGAGCACGCGCAGGGGCATGGCCCCGTCGAGTTCCCGGGCGGGCGCGTCCCGGCGCTCGTGCTCTGCCGCGTCGCGGGCGTCAGGTTCATGGCCGATCCGGACACCGACGAGGTGTTCGCCAAGATCCGCCTCGTCCCCGTCCGCGCCAACGAGCAGGGCTACGCCGGTGACGCCGACGACGGCATTGGCGCCGCCGCGGCCGCGGCGGCGCAGGAGGAGAAGCCCGCGTCGTTCGCCAAGACGCTCACGCAGTCCGACGCCAACAACGGCGGGGGGTTCTCCGTGCCGCGCTACTGCGCCGAGACCATCTTCCCGCGTCTCGACTACTCCGCCGATCCCCCCGTCCAGACCGTCCTCGCCAAGGACGTCCATGGCGTGGTCTGGAAGTTCCGCCACATCTACCGCGGCACGCCGAGGCGCCACCTCCTCACCACGGGGTGGAGCACCTTCGTGAACCAGAAGAAGCTCGTCGCCGGCGACTCCATCGTGTTCATGCGCACCGAGAACGGGGATCTCTGCGTCGGCATCCGCCGCGCCAAGAAAGGGGGCGTGGGAGGCCCGGAGTTCCTGCCGCCGCCGCCGCCGCCGCCGCCGACACCTGCCGCCGGCGGCAATTACGGCGGGTTCTCCATGTTCCTGAGGGGCGACGACGACGGCAACAAGATGGCGGCGGCGGCCAGGGGCAAGGTCAGAGCCCGTGTCCGGCCAGAGGAGGTCGTCGAGGCGGCCAATCTCGCCGTGAGCGGGCAACCATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGTCAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTATCGCCCCACGGCCTTCACCAGCTTGATCACGGCATGCAGCCGAGGATCGCCGCTGGTCTAATTATCGGTCATCCGGCTGCTCGGGATGATATCTCATGCTTGTTGACCATTGGTAGCCCCCAGAACAACAAGAAATCAGATGGCAAGAAGGCGCCAGCCCAGCTGATGCTTTTCGGAAAACCCATACTCACAGAGCAGCAGATATCCTTGGGTGATGCTGCTTCGGTGGATGTTAAGAAGAGCTCTTCTGATGGTAATGCTGAAAATACGGTGAATAAGAGTAACTCCGATGTTTCAAGCCCGAGAAGTAATCAGAATGGCACCACAGATAATTTGTCATGTGGAGGAGTTCCATTGTGCCAAGACAACAAGGTACTTGATGTTGGGCTGGAAACAGGGCACTGCAAGGTATTCATGCAGTCGGAGGATGTCGGGCGCACACTTGATCTCTCTGTTGTTGGTTCATATGAGGAATTATACCGGCGGCTTGCTGACATGTTCGGCATCGAGAAAGCTGAGCTGATGAGTCATGTTTTCTACCGTGATGCGGCTGGGGCACTCAAGCACACTGGAGATGAACCTTTCAGCGAGTTCACGAAGACGGCGCGTAGGCTGAATATACTAACAGATACAAGCGGCGATAACTTAGCGAGGTAG
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| Protein seq | MITFVDSAAKERERESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVEFPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFLPPPPPPPPTPAAGGNYGGFSMFLRGDDDGNKMAAAARGKVRARVRPEEVVEAANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLAPFSPPRKKLCVPLYPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGARHAQFGISLSDLHLNKLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIGSPQNNKKSDGKKAPAQLMLFGKPILTEQQISLGDAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSGDNLAR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g47150 | LOC_Os06g47150.2 | Chr06 | 28586485 | 28590358 | + | MSU_osa1r7 | ||
| CDS seq | ATGATAACTTTCGTGGATTCCGCGGCGAAGGAGCGGGAGCGGGAGAGTGACAAGTGCTTGGACCCGCAGCTGTGGCACGCCTGCGCCGGCGGCATGGTCCAGATGCCGCCGGTGAGCTCCAAGGTGTACTACTTCCCGCAAGGCCACGCCGAGCACGCGCAGGGGCATGGCCCCGTCGAGTTCCCGGGCGGGCGCGTCCCGGCGCTCGTGCTCTGCCGCGTCGCGGGCGTCAGGTTCATGGCCGATCCGGACACCGACGAGGTGTTCGCCAAGATCCGCCTCGTCCCCGTCCGCGCCAACGAGCAGGGCTACGCCGGTGACGCCGACGACGGCATTGGCGCCGCCGCGGCCGCGGCGGCGCAGGAGGAGAAGCCCGCGTCGTTCGCCAAGACGCTCACGCAGTCCGACGCCAACAACGGCGGGGGGTTCTCCGTGCCGCGCTACTGCGCCGAGACCATCTTCCCGCGTCTCGACTACTCCGCCGATCCCCCCGTCCAGACCGTCCTCGCCAAGGACGTCCATGGCGTGGTCTGGAAGTTCCGCCACATCTACCGCGGCACGCCGAGGCGCCACCTCCTCACCACGGGGTGGAGCACCTTCGTGAACCAGAAGAAGCTCGTCGCCGGCGACTCCATCGTGTTCATGCGCACCGAGAACGGGGATCTCTGCGTCGGCATCCGCCGCGCCAAGAAAGGGGGCGTGGGAGGCCCGGAGTTCCTGCCGCCGCCGCCGCCGCCGCCGCCGACACCTGCCGCCGGCGGCAATTACGGCGGGTTCTCCATGTTCCTGAGGGGCGACGACGACGGCAACAAGATGGCGGCGGCGGCCAGGGGCAAGGTCAGAGCCCGTGTCCGGCCAGAGGAGGTCGTCGAGGCGGCCAATCTCGCCGTGAGCGGGCAACCATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGTCAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTATCGCCCCACGGCCTTCACCAGCTTGATCACGGCATGCAGCCGAGGATCGCCGCTGGTCTAATTATCGGTCATCCGGCTGCTCGGGATGATATCTCATGCTTGTTGACCATTGGTAGCCCCCAGAACAACAAGAAATCAGATGGCAAGAAGGCGCCAGCCCAGCTGATGCTTTTCGGAAAACCCATACTCACAGAGCAGCAGATATCCTTGGGTGATGCTGCTTCGGTGGATGTTAAGAAGAGCTCTTCTGATGGTAATGCTGAAAATACGGTGAATAAGAGTAACTCCGATGTTTCAAGCCCGAGAAGTAATCAGAATGGCACCACAGATAATTTGTCATGTGGAGGAGTTCCATTGTGCCAAGACAACAAGGTACTTGATGTTGGGCTGGAAACAGGGCACTGCAAGGTATTCATGCAGTCGGAGGATGTCGGGCGCACACTTGATCTCTCTGTTGTTGGTTCATATGAGGAATTATACCGGCGGCTTGCTGACATGTTCGGCATCGAGAAAGCTGAGCTGATGAGTCATGTTTTCTACCGTGATGCGGCTGGGGCACTCAAGCACACTGGAGATGAACCTTTCAGCGAGTTCACGAAGACGGCGCGTAGGCTGAATATACTAACAGATACAAGCGGCGATAACTTAGCGAGGTAG
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| Protein seq | MITFVDSAAKERERESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVEFPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFLPPPPPPPPTPAAGGNYGGFSMFLRGDDDGNKMAAAARGKVRARVRPEEVVEAANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLAPFSPPRKKLCVPLYPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGARHAQFGISLSDLHLNKLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIGSPQNNKKSDGKKAPAQLMLFGKPILTEQQISLGDAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSGDNLAR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g47150 | LOC_Os06g47150.3 | Chr06 | 28586465 | 28590358 | + | MSU_osa1r7 | ||
| CDS seq | ATGATAACTTTCGTGGATTCCGCGGCGAAGGAGCGGGAGCGGGAGAGTGACAAGTGCTTGGACCCGCAGCTGTGGCACGCCTGCGCCGGCGGCATGGTCCAGATGCCGCCGGTGAGCTCCAAGGTGTACTACTTCCCGCAAGGCCACGCCGAGCACGCGCAGGGGCATGGCCCCGTCGAGTTCCCGGGCGGGCGCGTCCCGGCGCTCGTGCTCTGCCGCGTCGCGGGCGTCAGGTTCATGGCCGATCCGGACACCGACGAGGTGTTCGCCAAGATCCGCCTCGTCCCCGTCCGCGCCAACGAGCAGGGCTACGCCGGTGACGCCGACGACGGCATTGGCGCCGCCGCGGCCGCGGCGGCGCAGGAGGAGAAGCCCGCGTCGTTCGCCAAGACGCTCACGCAGTCCGACGCCAACAACGGCGGGGGGTTCTCCGTGCCGCGCTACTGCGCCGAGACCATCTTCCCGCGTCTCGACTACTCCGCCGATCCCCCCGTCCAGACCGTCCTCGCCAAGGACGTCCATGGCGTGGTCTGGAAGTTCCGCCACATCTACCGCGGCACGCCGAGGCGCCACCTCCTCACCACGGGGTGGAGCACCTTCGTGAACCAGAAGAAGCTCGTCGCCGGCGACTCCATCGTGTTCATGCGCACCGAGAACGGGGATCTCTGCGTCGGCATCCGCCGCGCCAAGAAAGGGGGCGTGGGAGGCCCGGAGTTCCTGCCGCCGCCGCCGCCGCCGCCGCCGACACCTGCCGCCGGCGGCAATTACGGCGGGTTCTCCATGTTCCTGAGGGGCGACGACGACGGCAACAAGATGGCGGCGGCGGCCAGGGGCAAGGTCAGAGCCCGTGTCCGGCCAGAGGAGGTCGTCGAGGCGGCCAATCTCGCCGTGAGCGGGCAACCATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGTCAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTATCGCCCCACGGCCTTCACCAGCTTGATCACGGCATGCAGCCGAGGATCGCCGCTGGTCTAATTATCGGTCATCCGGCTGCTCGGGATGATATCTCATGCTTGTTGACCATTGGTAGCCCCCAGAACAACAAGAAATCAGATGGCAAGAAGGCGCCAGCCCAGCTGATGCTTTTCGGAAAACCCATACTCACAGAGCAGCAGATATCCTTGGGTGATGCTGCTTCGGTGGATGTTAAGAAGAGCTCTTCTGATGGTAATGCTGAAAATACGGTGAATAAGAGTAACTCCGATGTTTCAAGCCCGAGAAGTAATCAGAATGGCACCACAGATAATTTGTCATGTGGAGGAGTTCCATTGTGCCAAGACAACAAGGTACTTGATGTTGGGCTGGAAACAGGGCACTGCAAGGTATTCATGCAGTCGGAGGATGTCGGGCGCACACTTGATCTCTCTGTTGTTGGTTCATATGAGGAATTATACCGGCGGCTTGCTGACATGTTCGGCATCGAGAAAGCTGAGCTGATGAGTCATGTTTTCTACCGTGATGCGGCTGGGGCACTCAAGCACACTGGAGATGAACCTTTCAGCGAGTTCACGAAGACGGCGCGTAGGCTGAATATACTAACAGATACAAGCGGCGATAACTTAGCGAGGTAG
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| Protein seq | MITFVDSAAKERERESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVEFPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFLPPPPPPPPTPAAGGNYGGFSMFLRGDDDGNKMAAAARGKVRARVRPEEVVEAANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLAPFSPPRKKLCVPLYPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGARHAQFGISLSDLHLNKLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIGSPQNNKKSDGKKAPAQLMLFGKPILTEQQISLGDAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSGDNLAR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g47150 | LOC_Os06g47150.4 | Chr06 | 28586485 | 28590358 | + | MSU_osa1r7 | ||
| CDS seq | ATGATAACTTTCGTGGATTCCGCGGCGAAGGAGCGGGAGCGGGAGAGTGACAAGTGCTTGGACCCGCAGCTGTGGCACGCCTGCGCCGGCGGCATGGTCCAGATGCCGCCGGTGAGCTCCAAGGTGTACTACTTCCCGCAAGGCCACGCCGAGCACGCGCAGGGGCATGGCCCCGTCGAGTTCCCGGGCGGGCGCGTCCCGGCGCTCGTGCTCTGCCGCGTCGCGGGCGTCAGGTTCATGGCCGATCCGGACACCGACGAGGTGTTCGCCAAGATCCGCCTCGTCCCCGTCCGCGCCAACGAGCAGGGCTACGCCGGTGACGCCGACGACGGCATTGGCGCCGCCGCGGCCGCGGCGGCGCAGGAGGAGAAGCCCGCGTCGTTCGCCAAGACGCTCACGCAGTCCGACGCCAACAACGGCGGGGGGTTCTCCGTGCCGCGCTACTGCGCCGAGACCATCTTCCCGCGTCTCGACTACTCCGCCGATCCCCCCGTCCAGACCGTCCTCGCCAAGGACGTCCATGGCGTGGTCTGGAAGTTCCGCCACATCTACCGCGGCACGCCGAGGCGCCACCTCCTCACCACGGGGTGGAGCACCTTCGTGAACCAGAAGAAGCTCGTCGCCGGCGACTCCATCGTGTTCATGCGCACCGAGAACGGGGATCTCTGCGTCGGCATCCGCCGCGCCAAGAAAGGGGGCGTGGGAGGCCCGGAGTTCCTGCCGCCGCCGCCGCCGCCGCCGCCGACACCTGCCGCCGGCGGCAATTACGGCGGGTTCTCCATGTTCCTGAGGGGCGACGACGACGGCAACAAGATGGCGGCGGCGGCCAGGGGCAAGGTCAGAGCCCGTGTCCGGCCAGAGGAGGTCGTCGAGGCGGCCAATCTCGCCGTGAGCGGGCAACCATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGTCAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTATCGCCCCACGGCCTTCACCAGCTTGATCACGGCATGCAGCCGAGGATCGCCGCTGGTCTAATTATCGGTCATCCGGCTGCTCGGGATGATATCTCATGCTTGTTGACCATTGGTAGCCCCCAGAACAACAAGAAATCAGATGGCAAGAAGGCGCCAGCCCAGCTGATGCTTTTCGGAAAACCCATACTCACAGAGCAGCAGATATCCTTGGGTGATGCTGCTTCGGTGGATGTTAAGAAGAGCTCTTCTGATGGTAATGCTGAAAATACGGTGAATAAGAGTAACTCCGATGTTTCAAGCCCGAGAAGTAATCAGAATGGCACCACAGATAATTTGTCATGTGGAGGAGTTCCATTGTGCCAAGACAACAAGGTACTTGATGTTGGGCTGGAAACAGGGCACTGCAAGGTATTCATGCAGTCGGAGGATGTCGGGCGCACACTTGATCTCTCTGTTGTTGGTTCATATGAGGAATTATACCGGCGGCTTGCTGACATGTTCGGCATCGAGAAAGCTGAGCTGATGAGTCATGTTTTCTACCGTGATGCGGCTGGGGCACTCAAGCACACTGGAGATGAACCTTTCAGGTCAGTCCAGTTTTAG
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| Protein seq | MITFVDSAAKERERESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVEFPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFLPPPPPPPPTPAAGGNYGGFSMFLRGDDDGNKMAAAARGKVRARVRPEEVVEAANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLAPFSPPRKKLCVPLYPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGARHAQFGISLSDLHLNKLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIGSPQNNKKSDGKKAPAQLMLFGKPILTEQQISLGDAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFRSVQF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.991614 | 2.683112 | 0.884479 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0685700 | RBH | 3.518028 | 4.160937 | 3.466290 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06910 | SBH | 1.348725 | 1.131968 | 2.745882 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0685700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026800 | RBH | 0.714803 | 8.840220 | 6.040182 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026630 | RBH | 0.693128 | 2.906965 | 3.074915 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026800 | RBH | 2.341342 | 8.357846 | 9.959682 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026420 | RBH | 0.385122 | 0.055558 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026890 | RBH | 14.040083 | 11.745374 | 13.532692 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0449600 | RBH | 8.9698 | 9.6670885 | 8.875848 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026300 | RBH | 0.482298 | 0.440012 | 1.356887 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0431400 | RBH | 8.1022925 | 7.224852 | 9.834582 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026740 | RBH | 0.362948 | 0.040516 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026840 | RBH | 1.316973 | 8.581018 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026460 | RBH | 6.086654 | 15.379875 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027110 | RBH | 0.821686 | 1.083893 | 1.862741 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026720 | RBH | 0.428935 | 2.792350 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026610 | RBH | 0.360375 | 1.289046 | 3.077114 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026710 | RBH | 0.850488 | 6.413197 | 7.068056 |
