Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g46700 | OGI:06079720 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:28368887-28371712 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACTCTAGCTTGACTTCCGCTCTCTTGGGAGGATCCAGCTGCAGGTAAGTATACGGCTCCGTTGGCTCCTCCCTGTAAATAACAGGTTGTTACATGAAAACTTCAGATACAAACGTAAGAGAAATATTCAGGGTTACGATGCTCATTACAATCTAACTACTACTAGTCACACACAAGTACATTTGTCATAACAACATTTCTCACAGCTTCACATTTTAGTGGACTCAAGTAAATAGCGTTTTGTCTACAACAGTTTTCTGAAGTACAGAAGCTTCTTGGGGAAAGAATGTCTATCGAAAGGGTTGCCTCGATTTCTACCCCAAGGTATGGTAGCAACTAGCAACAATACTTCTTTTTCTCACTTGAGTGGCTATTGGTCAGTTCAGTGGTTCTAGCATTAGCCTGTTTGAAGCAGTTGCTCCCAGCCAGACAGTGTCAGTGCTCCTAACTTGACCAAACTGAACCAGCCAAATTGAGATAGACCATATTTTCCTTTCCCTTTCCCAGGTTTGACAACAACAAATTTCATTTGAAAAGAAACCCTACCCGCCATTGGAAGTGAAGAAAGCAACCAAACCACCATCCTAGAAGGTGATACATGACACATGTAACCAAGCAACGAATAACTACATGGCAAAACAGGCCAAGAAGCATACATAAAATTTTATTGGATTTGTATTTAATTGAGAATAGCCCTATATAACTTCTCAAATACAAAGTTGCCTTACAATCTAATTCACACAACTCTCAGAGATTACAAGTTCAGTTGGTCAGAAAACAAAGCTCATGCTAATCCATGTGGTGAAAGGAATCACAACACTAGAGCCTTTTACACTGCAAAGATTAGTCATCATGAGCATTTTCTGCAGCCACTAGGTATATTCACATGGCACATATTTCTTTAGGCTGCTGAAGGACCTATGGTGGAAGAGCCACCGGCAAGAAGGAGCATAAAGAGAAGAACATATCAAACAATAGGCACAATATAATGGTCCACCTTATCATGAGCATCCTGTGACCACTCCTTAAAACCCCTCAATCAGATGATTCCAATGTCCTTTATCAATCATATTAGTTCTTAATGTGCTAGACCTATTGAAACGTATGTTGCCTCATATTACTGGGAATATATGTGTGAACAAAAGCATGAAACATACAAATTGTAAGAAGTTGTACATACCCAGGTTTCGAACGCATGCATTGCCAAAAGAGCTTGAATGGACCTGGAACTGTCTTGAAAGGATTCCCCTCAAAGCAAGCCTGCAACAGAAATTAGAAAACCAGTTCAACATAGAAATGGACAAAATTTTCAGAATTAACAATTGCATCATTTTCCCTAATATGATCAACATAATGAGGCATAGAGCAAAATTCTTCAGCATTCTTGGGAAACATTCATTACGTAGCAGACGCAGATAACCAATGAAAACTCTTTACTGAATATCCTAGACAGGATGAGTTCAACATAAAGATGGCCAAGAATTTCAGAATTAACAATATCATCATTTGCTATAATATAATCAACACATTGAGGCACAGAGCAAAATTCTTCAGCATTCTTGGGAAACATTCATTACATAGCAGACGCTGATAACTGATGAAAACTCTTTACTGAATATCCTAGACAGGATGAGTTCAACATAAAGATGGCCAAGAATTTCAGAATTAACAATATCATCATTTGCTATAATATAATCAACACATTGAGGCACAGAGCAAAATTCTTCAGCATTCTTGGGAAACATTCATTACATAGCAGACGCTGATAACTGATGAAAACTCTTTACTGAAAATCCCAGACAGGATGAAAATTTTGGACCCTGGCAGGTTCAGTGTGAGTGGAACCAGCATGCTAGTTGAAATTAGGGGCAATTCCATACTGAAAATTCGTCCATTTCTACTTGTGATTAAATGGGTTCATGGCCTCCCCGAGGTTTCTTATTCACCTAGCAGTGTATGTTGTTATAATTTGCCTATTAGTTCCCACTTTTCTTATTCACCTAGTAGTGTATGTTGTTATAATTTGCCTATTAGTTCCCACTTTTCTTATTCACCTAGGAGTATAGACCAGTAATATGGCCAATAAGTGCAAATGAACCAATTTGAGTTTATTTCTGTACTTGATCAATACTGAGGATCTAATGTTCAGACATTTGGCCCCCTCACTATTTCGATGAAGCTCCGCCATTGGTTTTTGGGTTAATTACTGAGGCTTATTTCATCCTGGGTAAGCATAAGAATCTGATTGCCATCTAGGCCGTTCCTAAACATGGTTTTGGGATCAAACATGGAAATACCACCTGCAGCCTGAAAGCAACAACAATCGCAGCAATGGCGCAATGCACATGCAGGATCATGGTGGCTGGTGGGCAGAGAACATCATGCAATCTTGTTATGTAACACGAAGAGAAGACATTCAGTTAGGTAAACACTGAAATAATTGTAAGTAAGAAAGGCTAGTAATGCCAAAACAACTATGTTTAACGATGCAATTACAGCCAATTTCACTATCAAGCGCCTTCAAGATCCAAATTTAGTACTAGCAAACAGGCATAGCGACAAGAGGTTCTCCACAAAACTATCATCCGGGTAGCTCTGAGCTCCGCAATTTCCATTACACATTCATCACCACTCATTCATCGGTAGGAAGATAATAAGAGATCAATCAGGTCGTGAGCTGTGGTTGGATTAGGGTTGAGAGGGGGTGGAACCTGGACGACGTCCTCGGCGCGGTCGTTGCAGCGGTGCGCCTTGGGCTCCCGCTTGTCCCCCTCCGGCAAGCCCCATGGGCTCTCCCTCCTCGGCACCGGCCTCCCCTCGCTCAT
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| CDS seq | ATGAGCGAGGGGAGGCCGGTGCCGAGGAGGGAGAGCCCATGGGGCTTGCCGGAGGGGGACAAGCGGGAGCCCAAGGCGCACCGCTGCAACGACCGCGCCGAGGACGTCGTCCAGGCTTGCTTTGAGGGGAATCCTTTCAAGACAGTTCCAGGTCCATTCAAGCTCTTTTGGCAATGCATGCGTTCGAAACCTGGGGAGGAGCCAACGGAGCCGTATACTTACCTGCAGCTGGATCCTCCCAAGAGAGCGGAAGTCAAGCTAGAGTAA |
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| Protein seq | MSEGRPVPRRESPWGLPEGDKREPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEPYTYLQLDPPKRAEVKLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g46700 | LOC_Os06g46700.1 | Chr06 | 28368887 | 28371712 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGCGAGGGGAGGCCGGTGCCGAGGAGGGAGAGCCCATGGGGCTTGCCGGAGGGGGACAAGCGGGAGCCCAAGGCGCACCGCTGCAACGACCGCGCCGAGGACGTCGTCCAGGCTTGCTTTGAGGGGAATCCTTTCAAGACAGTTCCAGGTCCATTCAAGCTCTTTTGGCAATGCATGCGTTCGAAACCTGGGGAGGAGCCAACGGAGCCGTATACTTACCTGCAGCTGGATCCTCCCAAGAGAGCGGAAGTCAAGCTAGAGTAA
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| Protein seq | MSEGRPVPRRESPWGLPEGDKREPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEPYTYLQLDPPKRAEVKLE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.466721 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026450 | RBH | 0.629058 | 10.746394 | 4.309715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026280 | RBH | 0.381704 | 3.459696 | 0.947955 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026450 | RBH | 1.377740 | 7.228860 | 3.683287 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026080 | RBH | 0.151088 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026560 | RBH | 0.000000 | 0.0 | 5.555840 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0445100 | RBH | 2.1048555 | 3.147228 | 11.6266845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025960 | RBH | 0.210447 | 0.348293 | 0.320943 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0427200 | RBH | 0.7465775 | 0.897628 | 2.9640055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026410 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026510 | RBH | 0.586498 | 9.327965 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026130 | RBH | 3.596538 | 9.287777 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026770 | RBH | 0.0 | 0.000000 | 0.688713 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026380 | RBH | 0.248416 | 12.440021 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026260 | RBH | 0.000000 | 4.412810 | 2.937443 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026310 | RBH | 0.000000 | 0.000000 | 2.603590 |
