Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g42720 | OGI:06072680 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:25690097-25693908 | ||||||||
| Gene Symbol | OsATL5 | ||||||||||
| DNA seq | GGGCGCGGTTAGGCGCCGCCATCGATCGAAGCAGCAAGCGAGGAAAAACAGCCAAGAGAGAGGAACATCAAGACGGCAAGAAAGCAGCAACAGGACCAGAGCAAGCAAGACCCCATCAATCAATCATCGGATACCACCTCTCGCTGCCCTGCGCCCCCCACAAGATTCCGACGACAGCAAAGACAGCGACGGGAGGGGAGGGATCGCGCGTTCTCGATTCGGAAATATTTTTTTTGTTCCCTCTCTTGCCGTTGATGTCGACGGAAATCACAGTGTGGAGGTGGGGGCAAGGAGAAGTACTGTAGCTTGTGAAAGCGAGTGGTTTTGGATCCAAGCTGGTTGATTGATTGCTCTTCGTCTCCCCTGGCTATAAAACGAGCGGGGCCGCAGCCGGGCTGCGGCGAGGCCGCCCTCCACAGATTTCTTGGCGATTTGTCTGGTTCTGCCTGCTCTTGCTGGTTTCAGATCCGGGAGGGGACTGAGCCTCCGAAGTTATCAGGTATCCCCTTTTCTTTTGCTTCAGTTTTGAGTTCTTGGTGAGGATTCTTGCTTGGATTGGGAAGATCGTTGCTTTTCTTGGGGGGCTTTGTGTCGGTGGTGGGATTCCTGATCAATTCTAGGAGAAGACTGGTTCTGAGTAGCTGGTTCGTGGGTCGCAGTGATTTTGGGGATAAATTTTGGATATGTATGCTGATTAGGATGGACTTGAAGTATCATTCGTACAACCGTGTCGTAGCCTCGTAGGCTTATGCCCGTGGTTGTGAATTGTGGTGGAAAGGTTGGATTTTTTGGGCTGAGCTTTAGTTGGTCTAACATGATCTTGCAGCTTGTTTCTTTGTGCGTTTTGTCTCATATTCTGGATATAATTTTATTTACTTTATGTTTTGACTTAGAGAGTTGCGTTTCTAAATTCTTAAAGTCTTTTGGTAGAAGAGAGAATGAACTTCTTGCTTCAAGGGAGTACCTAGTATCAGAAATTTCTTCTCTCCATAAGTCCATACTTGCATTAATTAAAAATGTGATACATTCATTTTGGGGAATATTAAAGCTGAACAGCATAAGAAATGGAAACCAAGTTAAAACTGTCTGATTCAAAGAAAGTTAGATGCATGATAATAAGCATACTTGGTTTTCCAGATAAAAATCTGACTGAATCCTTGCTATCCAGGAGAGTGAAAGACATAATGGGGATCAGCAGCGAATCGCCGAATGGGAGCCAGCAGATTGTACAAAAGGAAACACGAGATGAGACAACACCACTTCTGCCGGTCAAGGTGGAGGAGGAGGGGTTTCATGAGTTCAATGGAGCTTCATTTTCCGGGGCGGTTTTCAATTTATCGACCACTATTGTTGGGGCTGGAATTATGGCCTTGCCAGCCAGTATCAAGATGTTGGGCATCATCCCAGGGATTCTGATGATCATCGTTGTGGCGTTGCTCACAGAGGCATCAATTGACATGCTTGTCAGGTGCAGCCACCAGGGCAAGATTACATCTTATGGTTGGCTAATGGGTGAGGCTTACGGACAGTGGGGAAGAATTGCACTGCAGGCCTCTGTCGTCATAAACAACATTGGCGTGATGATTGTTTACATGATTATCATTGGTATCCCTTCTATGCTCTGCTGTTACATTTGAACATTTGACTTTTTTAGATGTGCAACCAAAAATTGCTGAGCTGGACTTTGTGCAAATAATCTACAGATTGGGTAGAACATCTTTTATTCTAGTGTAGTTAACTTAGGGCCAAACATTTTGTTGTGAAAAAAACCCCATTATTTTGGTGATTTTTTATTTAGAGGTTTAGAGCTAGCTGTTAGGCTTGGATTTCTTAGCACTTCATTCTCAAGCAAAAACAATACAATTTGTCATCGCTGTCAGCTAGTTTGATCAGTTTTTTACTACCAACTGGAATCTTTGCTTCTCTGAAAAGAAACAATGACCTATCCATTCTAAGCTATGTGGAGTCATAGGATAATTCCTCCTAATCAACACCTGTCTTGACAGATAACTTTGTTTTTCCCTAACTGAAGTCGATATTAATTCTTAAATTTGTAAAATAGGTGATGTATTATCTGGAACATCATCAACCGGTGTTCACCATCGTGGTATACTTGAGGGCTGGTTTGGAGCTCATCTCTGGAATTCACGTGCCATTGTTCTTCTTGCGACGACTCTTTTCGTGTTTGCTCCATTGGTGAGCTTTAAGCGTCTGGGTACGTCTTAGTGTTTTCATATTGGTAAAGAAAAAATATCCTTCATTGTATTTGATGTTATTGGCAGCATGATGTTACTTATAGATTTTGTCAATTGTCATGCCTTGTAGATTCATTGAGATACACCTCTGCCCTATCGGTTGCTCTTGCTGTGGTTTTTGTCGTCATTACTGCTGGAATTGCTATCATCAAACTCTTCAATGGAACTGTAGCGATGCCCAAACTTTTTCCAGAACTAGATGGTCTTAGTTCCATCTGGAAGCTCTTCACAGCTGTCCCTGTTCTTGTCACTGCCTACATCTGCCATTACAATGGTATGCACTCTCAGTGCTCAGACCTTTTTTTTTCAAGTGTTCAATAATCTGATGTCTAAATGCACGCTCTCATGATTCACAGTTCACAGCATTGACAATGAGCTTGAAGACAGAACACAAATTAAACCTATTGTGCGAACATCCCTGTTCCTCTGCTCCAGTGTTTACATTGCTACAAGTTTCTTTGCATATCTCCTCTTCGGCGAGGGTACCCTAGATGATGTTCTCGCTAACTTCGATGCAAATCTTGGGATTCCATTTAGTTCCGTCTTTGATGATATAGTGCGAGTGAGCTATGCTGCTCACGTTATGCTTGTCTTTCCCATAGTCTTCTTTGCCCTTAGGCTCAACTTGGATGGACTGCTCTTCCCCACATCAAGGCACATTTCTCGTGACAACAAGAGATTTGCCATAATCACTATCTCACTCCTCACAGTAATTTATCTTGCTGCCATTTTCATACCGAGCATTTGGGATGCATTCCAGTTTACTGGTGCAACTGCTGCTGTCCTGATTGGTTTCATCTTCCCTGCCATGGTTATACTTAGGTAACTAAATTATGTCTCGATGTGTTATATATTCCCTCTGTGTTCATGCATTTTCATATTGACATATAACATTTTGGCTTTCTTTTTTCTAGGGATCCTTATGGAATCGCATCCAAGCGTGACAAGATCTTGGCTGTAACCATGATCGTGCTTGCTGTCCTCTCCAATTCTGTTGCTTTATACAGCGATGCAATGAATATCTTCCGTAAGGAAGAGGAGGCATGAATGTCAGACTCCAAAGGAATGTCATCAAATATCAGTGATGAAGGAAGCGTGGCTTCATGTTATGAGACACAGATGCTGTGAAGGGAAATTATTTCCTGGAATCCAGCGAACGAAGATTTCTTGGTCAGCGGTCGAGGTTCCAGTCACTCGAATGAATTGGATGGTTGAATCTGCGTGGCTTCTGTGCGAACCGGCTCAAATTCGAATTGAGCTGCTCGCGATATCTGTATTGTTAGTGTTCTTGTATCCACAAGCAATGTATGGCTTTAAAATGCCTGGTTTACAATAATGTACAGTTTCAAAAATACTTCAGATGAGTTAAATGTCTATGTGAACCTGGACTCAGTGTCGATTTAAAATTGGAATGGCTGTTGTTGCCATCTTTCGGACTTTCACTTGTGTGTCAAGTCTCTGCATGTTTGAATTAAGGCAATATGAGAATTTAATTTACTTTTGAAAAACTCTGGTTTCCAATGATGTTGAAAAGTACAATGCTAAATTTTCATCACA
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| CDS seq | ATGGGGATCAGCAGCGAATCGCCGAATGGGAGCCAGCAGATTGTACAAAAGGAAACACGAGATGAGACAACACCACTTCTGCCGGTCAAGGTGGAGGAGGAGGGGTTTCATGAGTTCAATGGAGCTTCATTTTCCGGGGCGGTTTTCAATTTATCGACCACTATTGTTGGGGCTGGAATTATGGCCTTGCCAGCCAGTATCAAGATGTTGGGCATCATCCCAGGGATTCTGATGATCATCGTTGTGGCGTTGCTCACAGAGGCATCAATTGACATGCTTGTCAGGTGCAGCCACCAGGGCAAGATTACATCTTATGGTTGGCTAATGGGTGAGGCTTACGGACAGTGGGGAAGAATTGCACTGCAGGCCTCTGTCGTCATAAACAACATTGGCGTGATGATTGTTTACATGATTATCATTGGTGATGTATTATCTGGAACATCATCAACCGGTGTTCACCATCGTGGTATACTTGAGGGCTGGTTTGGAGCTCATCTCTGGAATTCACGTGCCATTGTTCTTCTTGCGACGACTCTTTTCGTGTTTGCTCCATTGGTGAGCTTTAAGCGTCTGGATTCATTGAGATACACCTCTGCCCTATCGGTTGCTCTTGCTGTGGTTTTTGTCGTCATTACTGCTGGAATTGCTATCATCAAACTCTTCAATGGAACTGTAGCGATGCCCAAACTTTTTCCAGAACTAGATGGTCTTAGTTCCATCTGGAAGCTCTTCACAGCTGTCCCTGTTCTTGTCACTGCCTACATCTGCCATTACAATGTTCACAGCATTGACAATGAGCTTGAAGACAGAACACAAATTAAACCTATTGTGCGAACATCCCTGTTCCTCTGCTCCAGTGTTTACATTGCTACAAGTTTCTTTGCATATCTCCTCTTCGGCGAGGGTACCCTAGATGATGTTCTCGCTAACTTCGATGCAAATCTTGGGATTCCATTTAGTTCCGTCTTTGATGATATAGTGCGAGTGAGCTATGCTGCTCACGTTATGCTTGTCTTTCCCATAGTCTTCTTTGCCCTTAGGCTCAACTTGGATGGACTGCTCTTCCCCACATCAAGGCACATTTCTCGTGACAACAAGAGATTTGCCATAATCACTATCTCACTCCTCACAGTAATTTATCTTGCTGCCATTTTCATACCGAGCATTTGGGATGCATTCCAGTTTACTGGTGCAACTGCTGCTGTCCTGATTGGTTTCATCTTCCCTGCCATGGTTATACTTAGGGATCCTTATGGAATCGCATCCAAGCGTGACAAGATCTTGGCTGTAACCATGATCGTGCTTGCTGTCCTCTCCAATTCTGTTGCTTTATACAGCGATGCAATGAATATCTTCCGTAAGGAAGAGGAGGCATGA
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| Protein seq | MGISSESPNGSQQIVQKETRDETTPLLPVKVEEEGFHEFNGASFSGAVFNLSTTIVGAGIMALPASIKMLGIIPGILMIIVVALLTEASIDMLVRCSHQGKITSYGWLMGEAYGQWGRIALQASVVINNIGVMIVYMIIIGDVLSGTSSTGVHHRGILEGWFGAHLWNSRAIVLLATTLFVFAPLVSFKRLDSLRYTSALSVALAVVFVVITAGIAIIKLFNGTVAMPKLFPELDGLSSIWKLFTAVPVLVTAYICHYNVHSIDNELEDRTQIKPIVRTSLFLCSSVYIATSFFAYLLFGEGTLDDVLANFDANLGIPFSSVFDDIVRVSYAAHVMLVFPIVFFALRLNLDGLLFPTSRHISRDNKRFAIITISLLTVIYLAAIFIPSIWDAFQFTGATAAVLIGFIFPAMVILRDPYGIASKRDKILAVTMIVLAVLSNSVALYSDAMNIFRKEEEA |
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| Function | Amino acid transporter AVT6A [UniProtKB/Swiss-Prot:Q9LI61] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g42720 | LOC_Os06g42720.1 | Chr06 | 25690097 | 25693908 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGGATCAGCAGCGAATCGCCGAATGGGAGCCAGCAGATTGTACAAAAGGAAACACGAGATGAGACAACACCACTTCTGCCGGTCAAGGTGGAGGAGGAGGGGTTTCATGAGTTCAATGGAGCTTCATTTTCCGGGGCGGTTTTCAATTTATCGACCACTATTGTTGGGGCTGGAATTATGGCCTTGCCAGCCAGTATCAAGATGTTGGGCATCATCCCAGGGATTCTGATGATCATCGTTGTGGCGTTGCTCACAGAGGCATCAATTGACATGCTTGTCAGGTGCAGCCACCAGGGCAAGATTACATCTTATGGTTGGCTAATGGGTGAGGCTTACGGACAGTGGGGAAGAATTGCACTGCAGGCCTCTGTCGTCATAAACAACATTGGCGTGATGATTGTTTACATGATTATCATTGGTGATGTATTATCTGGAACATCATCAACCGGTGTTCACCATCGTGGTATACTTGAGGGCTGGTTTGGAGCTCATCTCTGGAATTCACGTGCCATTGTTCTTCTTGCGACGACTCTTTTCGTGTTTGCTCCATTGGTGAGCTTTAAGCGTCTGGATTCATTGAGATACACCTCTGCCCTATCGGTTGCTCTTGCTGTGGTTTTTGTCGTCATTACTGCTGGAATTGCTATCATCAAACTCTTCAATGGAACTGTAGCGATGCCCAAACTTTTTCCAGAACTAGATGGTCTTAGTTCCATCTGGAAGCTCTTCACAGCTGTCCCTGTTCTTGTCACTGCCTACATCTGCCATTACAATGTTCACAGCATTGACAATGAGCTTGAAGACAGAACACAAATTAAACCTATTGTGCGAACATCCCTGTTCCTCTGCTCCAGTGTTTACATTGCTACAAGTTTCTTTGCATATCTCCTCTTCGGCGAGGGTACCCTAGATGATGTTCTCGCTAACTTCGATGCAAATCTTGGGATTCCATTTAGTTCCGTCTTTGATGATATAGTGCGAGTGAGCTATGCTGCTCACGTTATGCTTGTCTTTCCCATAGTCTTCTTTGCCCTTAGGCTCAACTTGGATGGACTGCTCTTCCCCACATCAAGGCACATTTCTCGTGACAACAAGAGATTTGCCATAATCACTATCTCACTCCTCACAGTAATTTATCTTGCTGCCATTTTCATACCGAGCATTTGGGATGCATTCCAGTTTACTGGTGCAACTGCTGCTGTCCTGATTGGTTTCATCTTCCCTGCCATGGTTATACTTAGGGATCCTTATGGAATCGCATCCAAGCGTGACAAGATCTTGGCTGTAACCATGATCGTGCTTGCTGTCCTCTCCAATTCTGTTGCTTTATACAGCGATGCAATGAATATCTTCCGTAAGGAAGAGGAGGCATGA
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| Protein seq | MGISSESPNGSQQIVQKETRDETTPLLPVKVEEEGFHEFNGASFSGAVFNLSTTIVGAGIMALPASIKMLGIIPGILMIIVVALLTEASIDMLVRCSHQGKITSYGWLMGEAYGQWGRIALQASVVINNIGVMIVYMIIIGDVLSGTSSTGVHHRGILEGWFGAHLWNSRAIVLLATTLFVFAPLVSFKRLDSLRYTSALSVALAVVFVVITAGIAIIKLFNGTVAMPKLFPELDGLSSIWKLFTAVPVLVTAYICHYNVHSIDNELEDRTQIKPIVRTSLFLCSSVYIATSFFAYLLFGEGTLDDVLANFDANLGIPFSSVFDDIVRVSYAAHVMLVFPIVFFALRLNLDGLLFPTSRHISRDNKRFAIITISLLTVIYLAAIFIPSIWDAFQFTGATAAVLIGFIFPAMVILRDPYGIASKRDKILAVTMIVLAVLSNSVALYSDAMNIFRKEEEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 14.771535 | 12.799508 | 26.743986 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0633800 | RBH | 26.743771 | 23.447897 | 130.390533 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09810 | RBH | 0.352115 | 0.447814 | 0.461672 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0633800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023440 | RBH | 20.393467 | 410.776459 | 123.125488 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023280 | RBH | 10.628093 | 62.860043 | 54.208290 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023400 | RBH | 34.410984 | 197.990662 | 130.645126 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023030 | RBH | 5.852575 | 4.273728 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023450 | RBH | 146.167557 | 190.241501 | 405.166901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0403300 | RBH | 296.097702 | 152.739067 | 61.834707 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022920 | RBH | 14.289362 | 14.822847 | 32.049316 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0384600 | RBH | 128.467899 | 31.5312795 | 57.2183265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023370 | RBH | 4.012211 | 1.686440 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023310 | RBH | 17.739714 | 174.447632 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022980 | RBH | 163.996872 | 197.973602 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0023650 | RBH | 35.852077 | 10.818464 | 44.762562 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023260 | RBH | 12.199121 | 75.926483 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023020 | RBH | 10.499952 | 21.971724 | 61.661163 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023240 | RBH | 74.069977 | 254.565079 | 250.763016 |
