Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g41320 | OGI:06065130 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:24733918-24736916 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATAAGTCATTTTCAGTGAATCTATACTTGTCTTTATACTCAATCCAACTTCTGTCAAACTCATCAGCATCTATATTATCATAAAGGAATTTCTTGAAGTATGCAAGCTTTTGCCAACGAAGGTGACGTTTCATATTCTCCTCAATGTGCCAACTACACAATCTATTATCAGTATTGGGCATAACCTTCATAATTGCCTTCGCCGTTGATGCATCCCCGTCAGTGATCAATGACTTTCGATGTTTTTGGTGCATTGCCTCCAAAAGAGTTTGCCACAGCCAAACATATGAAGAAATTGTCTCATTTGACAAAATACCACACCCAAAAATAATTGTGTTGCAATGATGGTTAGCTTCAACAAAAGGTACAAATGGAATATTGTACCAGTTCACACAACATATACTGTCAAATATTACCATGTCACCGAATGCTTCATAGACAAGCTGTGATTGACTGTTTGTCAAAATAAATTCCTTAGACGCCCCTTTTTTGTTTATGCTATATCTAAAGAAGACCTGGGTCTTCTTATTGCTGAGCCATCAGATGGTCCACCATGAGATCAGCAAATTGGGTGCCTTCAAGAATAGCAGAGAGAGGATGTGGACAAAAGTTTCAGGTTTTAAAGGGCAGGGTTTATCGAATGCAGGAAAAGATGTGTAAAAAAAATCAGTCCTATTAGCAGTTCCAACCTACTCCATGAGAGATTGCCAAAAGGTTTGTGCTCCAAATTATTAACCACCATTGTCAGGAATTTCTAGTGGGGGCGACAGCAGGGAAGAAGAAGACTAAATAGATTTCTTGGCAAAGATTATGTAAATCAAAGAGTGGAGGCATAGGGTTTCGGGATTTCAAGATTTTTAATCAAGCAATGCTTGCTAGGCAGGGGTGGAGGATTTTGACATGTCCAGAGTGTCTGTGTTCCAAAGTATTAAAGGCTCTCTATTTTAAAAATTGCTCCTTTCTGGAAGCTACATGTCCAAGGAAGGCTTTGTATATGTGGAGAAGCATTATTTTTGGTAGAGAGCTGCTGAGCAAGGGCCTGTTATGGCATATTACCGATGGTAAATCAATCAAAATTAAAAGAGATAATTTGATCCCATGGGTGGGCTCCTAGAGACCGCTAGGTTTTAAGGAGCCGGTGGGCGACCAGACAGTATCAAAACTATTTATATCAAGCACAAAACAATGGGACAATGATAGAGTTTCTGTTTTTTCGTTTGAGTGTGACACCACCGATGTGCTTAATATACCGTTACCTGAACATGATGGAGAAGATTTTGTTGCCTAGCAATTCACAAAGTCTTGGGTGTTTTTGGTGAAATGCTCCTGTCATATGCAGCAGAGCGCAATCGCAGTAGGCCAGTAGGCGTCAACCTGTAATCAACTGTTATAAAAACCAGCTCCGAAATCGACATCGGTAGCTAAACGCGGAAGAAAACGCCATAGGAGATCCAAATATGATGACGACACCGAGGCACGATATTTGATAACGGAGTTCAGCCGAGGCCTACATCTCCAGGGCACTGATTACGGGTGCTCCTCCCCAATCCAGCATATACAGCGTATCAGAGTTACAACGACTCACGGCCGGTCGCCGCCGGCAGCCGCTCACTCTCGCTATGCTATGTCGCCATGCGGTTACAACAGGCACGCTCCTCTATTTATGAGAGATCCTAGGATTGAGTCCGACTCATACTCTAGTCCTACACATAGTACAACTCCAAATCCTAAACTGTAACCGACTACGTACACATATTCGACACAAACTCTAACAAACTCCACCTTGGCGAATATGCCACGCCAATCCGAATATGTTACTTGCTCGAACCTTCGTGTACCAAGACTTGAGTTGATCCTTTTTTACCGCTCACGCCGAGCCGCCCCGATAAGTCTTCACCAGACTCACCGTAACAAGAGACTCCCGCTATCCCTGTAATTTCTTCCTCTTGACTCCACCTGCAACAGTGCTCCACCTTCTCTCATATCACCACAGTCGTCTTGCCAAGTGAAATTGGATCCTTCCTAGCTGTCACATCATAGACTTCCCGAAGACCATGTTCACCTCCATCTACCGTTTTAAATTTGACTTGATCTAATCCATGGCCAGATAACCGATGTCATCACCAAATAGATAAATCAAACTCACCAAACTTGAAGAGAACCTTTTCTTCCTTGTCCTCTTATGAACCGAGCTAATAAATCCAACATCCACGCTTTCCCGCATCCGTAGACTGAATTCCTAATAGTTTGAGAAAATCACCGTTGCTTTGAATCATCTGAAGAAATTACCACTATAGCGTTTACTCTTCTCCTTCAGTGACGCAGATTTCATATATCCCTATCATGCAATTCCCGCAGATCCTGGATATATCCTGTACTGCCAGACAACCCGTTGACGCCCTCAACGATTTTCACCCGCTGTTGCCGGGGAAATTGATTTACCCTGATTATATATATCAACCAGTCTTCCTACACATATATAGCACCCGCGCCTCCCTTCAACCTCAAGCTTCACCGAGCCTCCAGCCGTTGAGATGTCATGAGCCGCCAAAGTTCAATTACGAATACAACTCTACCACGGACTCCTCCTCTCAACCTGCTAATTTTTTCGGTATCCATGCATACACGTACCGTGTCCCTGCATCCTATCCGGACTCCTGAGCTCCCTTTTGGATTGCAACACCAACACATGCTTGATTTGATCCTGCATGCATGCAACATGCATGCTTTCCTCCAATAATCTATGCATGTTGACCGTCTCTCCAATTTTGGCTCAAGTTCCCATGTACATGCAGCCAGCTACACGATACTTCCTATGCACCTTGCTTCTTGTGTTGAAGAAAACCAAGCCAAACCCAAGTCCCTGTTAGACTCTGCTACCCAGCTTGGTCTGTTGTGCGCCCTGCTATTGTGCGTGTCGAGCCTCACGACTTTGCTGCCGCAGCCATACCGCACGCTTCTCCCTGAGCGCCGGTCCTTCTGTAGCAGTTGCCGTCAT
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| CDS seq | ATGACGGCAACTGCTACAGAAGGACCGGCGCTCAGGGAGAAGCGTGCGGATCAAATCAAGCATGTGTTGGTGTTGCAATCCAAAAGGGAGCTCAGGAGTCCGGATAGGATGCAGGGACACGATCAAGTCAAATTTAAAACGGTAGATGGAGGTGAACATGGTCTTCGGGAAGTCTATGATGTGACAGCTAGGAAGGATCCAATTTCACTTGGCAAGACGACTGTGGTGGAGTCAAGAGGAAGAAATTACAGGGATAGCGGGAGTCTCTTGTTACGCAATAAGAAGACCCAGGTCTTCTTTAGATATAGCATAAACAAAAAAGGGGCGTCTAAGGAATTTATTTTGACAAACAGTCAATCACAGCTTGTCTATGAAGCATTCGGTGACATGGTAATATTTGACAGTATATGTTGTGTGAACTGGTACAATATTCCATTTGTACCTTTTGTTGAAGCTAACCATCATTGCAACACAATTATTTTTGGGTGTGGTATTTTGTCAAATGAGACAATTTCTTCATATGTTTGGCTGTGGCAAACTCTTTTGGAGGCAATGCACCAAAAACATCGAAAGTCATTGATCACTGACGGGGATGCATCAACGGCGAAGGCAATTATGAAGGTTATGCCCAATACTGATAATAGATTGTGTAGTTGGCACATTGAGGAGAATATGAAACGTCACCTTCGTTGGCAAAAGCTTGCATACTTCAAGAAATTCCTTTATGATAATATAGATGCTGATGAGTTTGACAGAAGTTGGATTGAGTATAAAGACAAGTATAGATTCACTGAAAATGACTTATGA
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| Protein seq | MTATATEGPALREKRADQIKHVLVLQSKRELRSPDRMQGHDQVKFKTVDGGEHGLREVYDVTARKDPISLGKTTVVESRGRNYRDSGSLLLRNKKTQVFFRYSINKKGASKEFILTNSQSQLVYEAFGDMVIFDSICCVNWYNIPFVPFVEANHHCNTIIFGCGILSNETISSYVWLWQTLLEAMHQKHRKSLITDGDASTAKAIMKVMPNTDNRLCSWHIEENMKRHLRWQKLAYFKKFLYDNIDADEFDRSWIEYKDKYRFTENDL |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g41320 | LOC_Os06g41320.1 | Chr06 | 24733918 | 24736916 | - | MSU_osa1r7 | ||
| CDS seq | ATGACGGCAACTGCTACAGAAGGACCGGCGCTCAGGGAGAAGCGTGCGGATCAAATCAAGCATGTGTTGGTGTTGCAATCCAAAAGGGAGCTCAGGAGTCCGGATAGGATGCAGGGACACGATCAAGTCAAATTTAAAACGGTAGATGGAGGTGAACATGGTCTTCGGGAAGTCTATGATGTGACAGCTAGGAAGGATCCAATTTCACTTGGCAAGACGACTGTGGTGGAGTCAAGAGGAAGAAATTACAGGGATAGCGGGAGTCTCTTGTTACGCAATAAGAAGACCCAGGTCTTCTTTAGATATAGCATAAACAAAAAAGGGGCGTCTAAGGAATTTATTTTGACAAACAGTCAATCACAGCTTGTCTATGAAGCATTCGGTGACATGGTAATATTTGACAGTATATGTTGTGTGAACTGGTACAATATTCCATTTGTACCTTTTGTTGAAGCTAACCATCATTGCAACACAATTATTTTTGGGTGTGGTATTTTGTCAAATGAGACAATTTCTTCATATGTTTGGCTGTGGCAAACTCTTTTGGAGGCAATGCACCAAAAACATCGAAAGTCATTGATCACTGACGGGGATGCATCAACGGCGAAGGCAATTATGAAGGTTATGCCCAATACTGATAATAGATTGTGTAGTTGGCACATTGAGGAGAATATGAAACGTCACCTTCGTTGGCAAAAGCTTGCATACTTCAAGAAATTCCTTTATGATAATATAGATGCTGATGAGTTTGACAGAAGTTGGATTGAGTATAAAGACAAGTATAGATTCACTGAAAATGACTTATGA
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| Protein seq | MTATATEGPALREKRADQIKHVLVLQSKRELRSPDRMQGHDQVKFKTVDGGEHGLREVYDVTARKDPISLGKTTVVESRGRNYRDSGSLLLRNKKTQVFFRYSINKKGASKEFILTNSQSQLVYEAFGDMVIFDSICCVNWYNIPFVPFVEANHHCNTIIFGCGILSNETISSYVWLWQTLLEAMHQKHRKSLITDGDASTAKAIMKVMPNTDNRLCSWHIEENMKRHLRWQKLAYFKKFLYDNIDADEFDRSWIEYKDKYRFTENDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0597800 | SBH | 0.999009 | 1.999418 | 1.365252 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0597800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020940 | SBH | 0.570616 | 17.879639 | 11.920716 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0365600 | RBH | 2.0760085 | 40.907898 | 0.455935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0345900 | SBH | 0.0045855 | 0.1103065 | 0.0064585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
