Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g41010 | OGI:06069400 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:24491979-24494238 | ||||||||
| Gene Symbol | SAP8, Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1 | ||||||||||
| DNA seq | CCCCACGTTTCGCCCCCCATTTCGAAGCCCACCGAATTCCATTCCTCGCGATTCCTCTCCCCTCGCCTCCTCGTCCTCCCCCTCCTAGGGTTCGTTCCTACTCCCTTTCCCCCCCCCCCCCCCGATTCAATCGCGCCTCGATCTCTCGCCCCCGGTGCTCCTCCCTGGCCGATCCGGGATGCTGTTGATTTGAGGGGTTTTCTTTTTTCTTTTCTTTTCTTTTCTTTTTCTTGATGGTTTCTTGATGGGGGGTTCTGTGATGCAGGGATCGCCGGAGAGGAATCGCGCGGAGGAAAAAAAAAGAAAAGGGCTTCCTCGTCGTCTAAGGTTCGTGGCTCGATTGCTTCCCTGTTCGATTTATGATTATTATTGGTTTAATTTAGCGTGTTTTTTTTCCTTTTTCCGCGGTCAAAAGGTGTGATTTTTTTTGATTTGTTGATTTGATGTGTTTGGGGTTGGGGTTGGGTGTGGAAGGAACGGCGATGAGCGGCGAGCGAATTCGGGGGAGGTATGGTGTAAAGGCGGTGTTCCCTTTACACGTATTGGGGGTGTGGTTGTTGCGCCTAGTTGATGGATGGATGAATGGATGGATGGCTTCTTTGGGGCGCTTTGGGCAAAGTCAGTGAGCAGATATGGCTGCAACTTTATGGATTTGTTGCTCTGTTGCGTAAAGCGGCGTAAAGTTGGGAGCCTCTTTCTAGAACCAATATATATATATATCCCCTGCTCTCTGATGTTGTTAGGTAATTAGTCTGTTGGGCTAGATAGATTTATAGCAAGGCAGGTTGGACTGTTAGTGGTACATCCACTTTTCTTCGGAGTTCTTTTACATGATGCTTTGCTAGAGTGAAATTTGACATGTATACTATGCTTCTTGTTTTTGTCGCGGTGTATTTTGCGCAATCAAGAACATATGCCATCATTGGCAGATATTGTCTGCTCAGTTTTGCTACCCTGAAGTGGAACATTTGATTGTAATGCATTTGCTTTTAGAGAGTGGAAAAATGGAACCTGTTTTTCTTCTTTAGTCTTGTATTTACGCATTTTTTCTTCTTCTGATTTATAGTTAAAAGGAAGCCATGGAGCACAAGGAGACTGGATGCCAGCAGCCAGAAGGCCCGATCCTTTGCATCAATAACTGCGGCTTCTTTGGCAGTGCGGCTACCATGAACATGTGCTCAAAGTGCCACAAGGAGATGATAATGAAGCAGGAGCAGGCCAAGCTGGCAGCCTCCTCTATCGACAGCATTGTCAATGGTGGTGATTCCGGGAAGGAACCAATTATTGCTGGTCACGCTGAAGTAGCTGTTGCTCAAGTCGAGGTGAAGACGCTTGTTGCGCAGCCTGCTGAGATTGCTGGTCCTAGTGAGGGGGTCACGGTGAACCCCAAGGGGAGGGAAGGACCAAATCGGTGCTCCACTTGTCGGAAGAGGGTTGGTCTTACCGGATTCAACTGCCGATGTGGCAACTTGTACTGCGCAATGCACCGCTATTCCGATAAGCATGACTGCCAGTTTGACTATCGGACCGCTGCTAGGGATGCTATTGCCAAGGCTAATCCGGTGGTGAAGGCGGAGAAACTTGACAAAATTTAGGGGTTTCATATGGTTGGTGAACGAAGCGTCACAATCTGCGGTCTTCATCATCCATCTTTGCTGCATTATCCATGCCTTTTCCTTTCATGTTGGCTGCTACAATCTAGTTGTTCGGCATTTGTGATGCATGGCACACCACGGCAGCTTCAAGAACCCTCATCTCTGGTCAGTCCGAATGGTTTGCATGTTGGCTATGTTGTGTAAGCTTTATTTATGATCGTCTTGCGCTGACGGTATTGTGGCTTCGCATTTAGCTAGCTCTGTAATGTACTATTGTATCCGAAGTGTTACATTGCAACCAGTAATAGTAATCAGCAATCGTCCGTTATATGGTACTGATGACCATTCCTGTGTGCAGTACATCTCAATCTTCTACATGGTAAACTCTGGGTGAGGATTCACAATATATATACTACCTGGATATCTCCCACAAAGACTTGTTTAGAAGTTTAGGTGACCTGGTGAGAATGTGGTTCTGTGGTTGGTTTGTGTAGGCTTTGGCTTTACCTGGATATTATACACTGGAATATATACTTTTGCATGTGGAGCTTCTCTATGTGATCTATTTTTGGTTGTCTGTTAGGTTTGAATATGCAACTAAATGAAATAGATGGTAAAAAAGATCAAACAAAAGGTGAATATCATAAATGTTTGGTTCCGTGATC
More
|
||||||||||
| CDS seq | ATGGAGCACAAGGAGACTGGATGCCAGCAGCCAGAAGGCCCGATCCTTTGCATCAATAACTGCGGCTTCTTTGGCAGTGCGGCTACCATGAACATGTGCTCAAAGTGCCACAAGGAGATGATAATGAAGCAGGAGCAGGCCAAGCTGGCAGCCTCCTCTATCGACAGCATTGTCAATGGTGGTGATTCCGGGAAGGAACCAATTATTGCTGGTCACGCTGAAGTAGCTGTTGCTCAAGTCGAGGTGAAGACGCTTGTTGCGCAGCCTGCTGAGATTGCTGGTCCTAGTGAGGGGGTCACGGTGAACCCCAAGGGGAGGGAAGGACCAAATCGGTGCTCCACTTGTCGGAAGAGGGTTGGTCTTACCGGATTCAACTGCCGATGTGGCAACTTGTACTGCGCAATGCACCGCTATTCCGATAAGCATGACTGCCAGTTTGACTATCGGACCGCTGCTAGGGATGCTATTGCCAAGGCTAATCCGGTGGTGAAGGCGGAGAAACTTGACAAAATTTAG
More
|
||||||||||
| Protein seq | MEHKETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI |
||||||||||
| Function | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 [UniProtKB/Swiss-Prot:A3BDI8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g41010 | LOC_Os06g41010.1 | Chr06 | 24491979 | 24494238 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGCACAAGGAGACTGGATGCCAGCAGCCAGAAGGCCCGATCCTTTGCATCAATAACTGCGGCTTCTTTGGCAGTGCGGCTACCATGAACATGTGCTCAAAGTGCCACAAGGAGATGATAATGAAGCAGGAGCAGGCCAAGCTGGCAGCCTCCTCTATCGACAGCATTGTCAATGGTGGTGATTCCGGGAAGGAACCAATTATTGCTGGTCACGCTGAAGTAGCTGTTGCTCAAGTCGAGGTGAAGACGCTTGTTGCGCAGCCTGCTGAGATTGCTGGTCCTAGTGAGGGGGTCACGGTGAACCCCAAGGGGAGGGAAGGACCAAATCGGTGCTCCACTTGTCGGAAGAGGGTTGGTCTTACCGGATTCAACTGCCGATGTGGCAACTTGTACTGCGCAATGCACCGCTATTCCGATAAGCATGACTGCCAGTTTGACTATCGGACCGCTGCTAGGGATGCTATTGCCAAGGCTAATCCGGTGGTGAAGGCGGAGAAACTTGACAAAATTTAG
More
|
|||||||
| Protein seq | MEHKETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g41010 | LOC_Os06g41010.3 | Chr06 | 24492726 | 24494238 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGCACAAGGAGACTGGATGCCAGCAGCCAGAAGGCCCGATCCTTTGCATCAATAACTGCGGCTTCTTTGGCAGTGCGGCTACCATGAACATGTGCTCAAAGTGCCACAAGGAGATGATAATGAAGCAGGAGCAGGCCAAGCTGGCAGCCTCCTCTATCGACAGCATTGTCAATGGTGGTGATTCCGGGAAGGAACCAATTATTGCTGGTCACGCTGAAGTAGCTGTTGCTCAAGTCGAGGTGAAGACGCTTGTTGCGCAGCCTGCTGAGATTGCTGGTCCTAGTGAGGGGGTCACGGTGAACCCCAAGGGGAGGGAAGGACCAAATCGGTGCTCCACTTGTCGGAAGAGGGTTGGTCTTACCGGATTCAACTGCCGATGTGGCAACTTGTACTGCGCAATGCACCGCTATTCCGATAAGCATGACTGCCAGTTTGACTATCGGACCGCTGCTAGGGATGCTATTGCCAAGGCTAATCCGGTGGTGAAGGCGGAGAAACTTGACAAAATTTAG
More
|
|||||||
| Protein seq | MEHKETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g41010 | LOC_Os06g41010.4 | Chr06 | 24492072 | 24494238 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGCACAAGGAGACTGGATGCCAGCAGCCAGAAGGCCCGATCCTTTGCATCAATAACTGCGGCTTCTTTGGCAGTGCGGCTACCATGAACATGTGCTCAAAGTGCCACAAGGAGATGATAATGAAGCAGGAGCAGGCCAAGCTGGCAGCCTCCTCTATCGACAGCATTGTCAATGGTGGTGATTCCGGGAAGGAACCAATTATTGCTGGTCACGCTGAAGTAGCTGTTGCTCAAGTCGAGGTGAAGACGCTTGTTGCGCAGCCTGCTGAGATTGCTGGTCCTAGTGAGGGGGTCACGGTGAACCCCAAGGGGAGGGAAGGACCAAATCGGTGCTCCACTTGTCGGAAGAGGGTTGGTCTTACCGGATTCAACTGCCGATGTGGCAACTTGTACTGCGCAATGCACCGCTATTCCGATAAGCATGACTGCCAGTTTGACTATCGGACCGCTGCTAGGGATGCTATTGCCAAGGCTAATCCGGTGGTGAAGGCGGAGAAACTTGACAAAATTTAG
More
|
|||||||
| Protein seq | MEHKETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.667462 | 10.776601 | 18.015184 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0612800 | RBH | 21.994894 | 26.081039 | 126.396057 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10200 | RBH | 3.117307 | 2.179319 | 6.967155 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0612800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022290 | RBH | 23.517637 | 260.747253 | 89.878151 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022140 | RBH | 3.828816 | 39.308346 | 34.867676 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022240 | RBH | 52.562359 | 166.889160 | 110.854973 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0021960 | RBH | 9.008114 | 4.386102 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022370 | RBH | 102.964417 | 140.515503 | 255.320099 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0385600 | RBH | 176.53997 | 994.3284915 | 571.3229675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0021820 | RBH | 8.767447 | 13.543431 | 20.729893 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0365500 | RBH | 191.4684605 | 1584.248352 | 440.408386 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022280 | RBH | 4.095725 | 3.956988 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022200 | RBH | 14.352691 | 127.224197 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0021890 | RBH | 170.325211 | 328.463165 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022560 | RBH | 12.927846 | 13.537379 | 31.646986 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022150 | RBH | 11.910604 | 109.837158 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021920 | RBH | 15.857223 | 35.406921 | 58.979591 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022120 | RBH | 41.466602 | 634.979492 | 183.995712 |
