Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g39780 | OGI:06067130 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:23632462-23634203 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCAGGTAGAAAAATTAAGAACAACGATACCAGTAGTGCACCACAGCTTCATCGCAACAATGGAGAATAGCCAGGTGTGGCTGCTATGGGGAGCTCTCTCCGTCGCTGTCCTCTTCTACCTCTCCACCCTGCGACGACGCCACGCGGGAGGCAAGCCCCTTCCCCCGGGCCCGACGCCGCTGCCGCTCATCGGCAACCTCCACTTGGCCGGCGGCACGTCGTTCCACCACAAGCTCAGGGACCTGGCGCGCGTCCACGGCCCCGTGATGACGCTCAAGCTCGGCCTCGCCACCAACGTGGTCATCTCCTCCCGTGAGGCCGCCATCGAGGCGTACACCAAGTACGACCGCCACCTCGCCGCGCGCGCCACCCCGGACACCTTCCGCGCGTGCGGCTTCGCCGACCGGTCCATGGTGTTCATCCCGAGCTCCGACCCGCGGTGGAAGGCCCTGCGGGGGATCCAGGGCTCCCACGTCTTCACCCCGCGTGGCCTCGCCGCCGTGCGCCCCATCCGCGAGCGGAAGGTGGGCGACCTCATGGCCTACCTCCGCGCGCACGCCGGCGAGGAGGTGCTCCTCGGCCAGGCCATGCACACGGGCCTCCTCAACCTCGTGTCCTTCTCCTACTTCTCCATCGACATCGTCGACATGGGCTCGCAGATGGCTCGCGACCTGCGGGAGGTGGTGGACGACATCATCTCGGTGGTCGGGAAGCCCAACATCTCCGACTTCTACCCGTTCCTCCGGCCGCTGGACCTGCAGGGCCTGCGGCGCTGGACGACGAAGCGGTTCAACAGGGTGTTCTCCATCATGGGCGACATCATCGACCGCCGTTTGGCTCACATCCGCGACAACAAGCCAAGCCATAACGATTTCCTCGACTCACTCCTCGAGCTCATGGCTGCCGGCAAGATCGATCGGGTCAACGTGCTCGACATGTTGTTCGAGGCTTTCGTTGCCGGGGCTGACACCATGGCTCTTACCTTGGAGTGGGTGATGGCCGAGCTGCTCAAGAACCCGGGCGTGATGGCCAAGGCGCGAGCTGAGCTGAGGGATGTGCTTGGCGACAAGGAGGTTGTGGAGGAGGCCGACGCGGCGAGGCTGCCCTACCTGCAGGCCGTGCTGAAGGAGGCCATGAGGCTGCACCCGGTGGGCGCGCTGCTGCTGCCGCACTTCGCCGTGGAGGACGGCGTGGAGGTCGGCGGCTACGCGGTGCCCAAGGGCTCCACGGTGCTCTTCAACGCGTGGGCGATCATGCGCGACCCGGCGGCGTGGGAGAGGCCCGACGAGTTCGTGCCGGAGCGGTTCGTGGAGAGGGCGCCGCTGCTGGACTTCAGGGGGAAGGACGCCGAGTTCATGCCGTTCGGCTCCGGGAGGCGGCTGTGCCCCGGGCTGCCGTTGGCGGAGCGCGTCATGCCGTTCATACTTGCGTCGATGCTGCACACGTTCGAGTGGAAGCTCCCCGGCGGCATGACAGCGGAGGACGTGGACGTGTCCGAGAAGTTCAAGTCTGCCAATGTGCTTGCTGTGCCTCTCAAGGCCGTGCCTGTCCTGATCAAATAGTCGGACGTACGACTATATTATTAGCCCGGTAGTCAATATTAGTTTTTCAATATATGGGACCAGTCGCACGAGAATAATATGCATATGCATATATATGAATAAGATTGTGTCTACGTATATCCACCTTGCAATTTTAGACGTTGGATGAATTAAGATGGTTCAGTGCAGAAACTTATGTGT
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| CDS seq | ATGGAGAATAGCCAGGTGTGGCTGCTATGGGGAGCTCTCTCCGTCGCTGTCCTCTTCTACCTCTCCACCCTGCGACGACGCCACGCGGGAGGCAAGCCCCTTCCCCCGGGCCCGACGCCGCTGCCGCTCATCGGCAACCTCCACTTGGCCGGCGGCACGTCGTTCCACCACAAGCTCAGGGACCTGGCGCGCGTCCACGGCCCCGTGATGACGCTCAAGCTCGGCCTCGCCACCAACGTGGTCATCTCCTCCCGTGAGGCCGCCATCGAGGCGTACACCAAGTACGACCGCCACCTCGCCGCGCGCGCCACCCCGGACACCTTCCGCGCGTGCGGCTTCGCCGACCGGTCCATGGTGTTCATCCCGAGCTCCGACCCGCGGTGGAAGGCCCTGCGGGGGATCCAGGGCTCCCACGTCTTCACCCCGCGTGGCCTCGCCGCCGTGCGCCCCATCCGCGAGCGGAAGGTGGGCGACCTCATGGCCTACCTCCGCGCGCACGCCGGCGAGGAGGTGCTCCTCGGCCAGGCCATGCACACGGGCCTCCTCAACCTCGTGTCCTTCTCCTACTTCTCCATCGACATCGTCGACATGGGCTCGCAGATGGCTCGCGACCTGCGGGAGGTGGTGGACGACATCATCTCGGTGGTCGGGAAGCCCAACATCTCCGACTTCTACCCGTTCCTCCGGCCGCTGGACCTGCAGGGCCTGCGGCGCTGGACGACGAAGCGGTTCAACAGGGTGTTCTCCATCATGGGCGACATCATCGACCGCCGTTTGGCTCACATCCGCGACAACAAGCCAAGCCATAACGATTTCCTCGACTCACTCCTCGAGCTCATGGCTGCCGGCAAGATCGATCGGGTCAACGTGCTCGACATGTTGTTCGAGGCTTTCGTTGCCGGGGCTGACACCATGGCTCTTACCTTGGAGTGGGTGATGGCCGAGCTGCTCAAGAACCCGGGCGTGATGGCCAAGGCGCGAGCTGAGCTGAGGGATGTGCTTGGCGACAAGGAGGTTGTGGAGGAGGCCGACGCGGCGAGGCTGCCCTACCTGCAGGCCGTGCTGAAGGAGGCCATGAGGCTGCACCCGGTGGGCGCGCTGCTGCTGCCGCACTTCGCCGTGGAGGACGGCGTGGAGGTCGGCGGCTACGCGGTGCCCAAGGGCTCCACGGTGCTCTTCAACGCGTGGGCGATCATGCGCGACCCGGCGGCGTGGGAGAGGCCCGACGAGTTCGTGCCGGAGCGGTTCGTGGAGAGGGCGCCGCTGCTGGACTTCAGGGGGAAGGACGCCGAGTTCATGCCGTTCGGCTCCGGGAGGCGGCTGTGCCCCGGGCTGCCGTTGGCGGAGCGCGTCATGCCGTTCATACTTGCGTCGATGCTGCACACGTTCGAGTGGAAGCTCCCCGGCGGCATGACAGCGGAGGACGTGGACGTGTCCGAGAAGTTCAAGTCTGCCAATGTGCTTGCTGTGCCTCTCAAGGCCGTGCCTGTCCTGATCAAATAG
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| Protein seq | MENSQVWLLWGALSVAVLFYLSTLRRRHAGGKPLPPGPTPLPLIGNLHLAGGTSFHHKLRDLARVHGPVMTLKLGLATNVVISSREAAIEAYTKYDRHLAARATPDTFRACGFADRSMVFIPSSDPRWKALRGIQGSHVFTPRGLAAVRPIRERKVGDLMAYLRAHAGEEVLLGQAMHTGLLNLVSFSYFSIDIVDMGSQMARDLREVVDDIISVVGKPNISDFYPFLRPLDLQGLRRWTTKRFNRVFSIMGDIIDRRLAHIRDNKPSHNDFLDSLLELMAAGKIDRVNVLDMLFEAFVAGADTMALTLEWVMAELLKNPGVMAKARAELRDVLGDKEVVEEADAARLPYLQAVLKEAMRLHPVGALLLPHFAVEDGVEVGGYAVPKGSTVLFNAWAIMRDPAAWERPDEFVPERFVERAPLLDFRGKDAEFMPFGSGRRLCPGLPLAERVMPFILASMLHTFEWKLPGGMTAEDVDVSEKFKSANVLAVPLKAVPVLIK |
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| Function | Ent-cassadiene C11-alpha-hydroxylase 1 [UniProtKB/Swiss-Prot:Q69X58] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g39780 | LOC_Os06g39780.1 | Chr06 | 23632462 | 23634203 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAATAGCCAGGTGTGGCTGCTATGGGGAGCTCTCTCCGTCGCTGTCCTCTTCTACCTCTCCACCCTGCGACGACGCCACGCGGGAGGCAAGCCCCTTCCCCCGGGCCCGACGCCGCTGCCGCTCATCGGCAACCTCCACTTGGCCGGCGGCACGTCGTTCCACCACAAGCTCAGGGACCTGGCGCGCGTCCACGGCCCCGTGATGACGCTCAAGCTCGGCCTCGCCACCAACGTGGTCATCTCCTCCCGTGAGGCCGCCATCGAGGCGTACACCAAGTACGACCGCCACCTCGCCGCGCGCGCCACCCCGGACACCTTCCGCGCGTGCGGCTTCGCCGACCGGTCCATGGTGTTCATCCCGAGCTCCGACCCGCGGTGGAAGGCCCTGCGGGGGATCCAGGGCTCCCACGTCTTCACCCCGCGTGGCCTCGCCGCCGTGCGCCCCATCCGCGAGCGGAAGGTGGGCGACCTCATGGCCTACCTCCGCGCGCACGCCGGCGAGGAGGTGCTCCTCGGCCAGGCCATGCACACGGGCCTCCTCAACCTCGTGTCCTTCTCCTACTTCTCCATCGACATCGTCGACATGGGCTCGCAGATGGCTCGCGACCTGCGGGAGGTGGTGGACGACATCATCTCGGTGGTCGGGAAGCCCAACATCTCCGACTTCTACCCGTTCCTCCGGCCGCTGGACCTGCAGGGCCTGCGGCGCTGGACGACGAAGCGGTTCAACAGGGTGTTCTCCATCATGGGCGACATCATCGACCGCCGTTTGGCTCACATCCGCGACAACAAGCCAAGCCATAACGATTTCCTCGACTCACTCCTCGAGCTCATGGCTGCCGGCAAGATCGATCGGGTCAACGTGCTCGACATGTTGTTCGAGGCTTTCGTTGCCGGGGCTGACACCATGGCTCTTACCTTGGAGTGGGTGATGGCCGAGCTGCTCAAGAACCCGGGCGTGATGGCCAAGGCGCGAGCTGAGCTGAGGGATGTGCTTGGCGACAAGGAGGTTGTGGAGGAGGCCGACGCGGCGAGGCTGCCCTACCTGCAGGCCGTGCTGAAGGAGGCCATGAGGCTGCACCCGGTGGGCGCGCTGCTGCTGCCGCACTTCGCCGTGGAGGACGGCGTGGAGGTCGGCGGCTACGCGGTGCCCAAGGGCTCCACGGTGCTCTTCAACGCGTGGGCGATCATGCGCGACCCGGCGGCGTGGGAGAGGCCCGACGAGTTCGTGCCGGAGCGGTTCGTGGAGAGGGCGCCGCTGCTGGACTTCAGGGGGAAGGACGCCGAGTTCATGCCGTTCGGCTCCGGGAGGCGGCTGTGCCCCGGGCTGCCGTTGGCGGAGCGCGTCATGCCGTTCATACTTGCGTCGATGCTGCACACGTTCGAGTGGAAGCTCCCCGGCGGCATGACAGCGGAGGACGTGGACGTGTCCGAGAAGTTCAAGTCTGCCAATGTGCTTGCTGTGCCTCTCAAGGCCGTGCCTGTCCTGATCAAATAG
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| Protein seq | MENSQVWLLWGALSVAVLFYLSTLRRRHAGGKPLPPGPTPLPLIGNLHLAGGTSFHHKLRDLARVHGPVMTLKLGLATNVVISSREAAIEAYTKYDRHLAARATPDTFRACGFADRSMVFIPSSDPRWKALRGIQGSHVFTPRGLAAVRPIRERKVGDLMAYLRAHAGEEVLLGQAMHTGLLNLVSFSYFSIDIVDMGSQMARDLREVVDDIISVVGKPNISDFYPFLRPLDLQGLRRWTTKRFNRVFSIMGDIIDRRLAHIRDNKPSHNDFLDSLLELMAAGKIDRVNVLDMLFEAFVAGADTMALTLEWVMAELLKNPGVMAKARAELRDVLGDKEVVEEADAARLPYLQAVLKEAMRLHPVGALLLPHFAVEDGVEVGGYAVPKGSTVLFNAWAIMRDPAAWERPDEFVPERFVERAPLLDFRGKDAEFMPFGSGRRLCPGLPLAERVMPFILASMLHTFEWKLPGGMTAEDVDVSEKFKSANVLAVPLKAVPVLIK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.284333 | 0.547687 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0599200 | RBH | 0.436490 | 0.845362 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g11020 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0599200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021440 | RBH | 0.0 | 3.085738 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021380 | RBH | 0.240236 | 1.315316 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022950 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023370 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0408900 | SBH | 2.8028335 | 0.120393 | 0.004559 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022840 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0352800 | RBH | 0.7395675 | 0.6881355 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0021370 | RBH | 0.000000 | 0.071687 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023230 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022900 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0023580 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0021240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022940 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023160 | SBH | 0.0 | 0.0 | 0.0 |
