Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g39400 | OGI:06066190 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:23382205-23388387 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACGAAATTCTGTAGGTACTACGCCATCCAAAATGAAATAAAAGTTCCTTGGCTACTATTTCCAAGCGTGTAGCACCATTGCGCATAGTATCCTGTTGTTCCTGTGAAAGCATCATACACCAAGAGTGGAGCCAATTGGAACACATGAAGATAACCTGCATGATGTTAGGCATTTTTTTATGGTTAAAAACTATATCATTACGGCAACGCCAAATTGACCAACATAAAGCACTAGCTCCAAATAAAATCATTTTTTTTGTGGGTCTAGGCACTCCCCTTAGCTAGTCACCAAATATATCTTTTGCATTGTGGGGAGGGGGGATGTTGAAGGCAAAGAAGACACATCGCCAAGCAAAACGTACAACATGACAGTCAAAGAAAAGATGTTGGATGGTCTCTTGTGTATTACAAAAACAACATTGCTTGTTTCCCCTCCAATTTCTCTTTATGAGATTATCTTTTGTCAAGATTACTTTTTTGTGAAGAAACCACATAAATACTTTGATTTTTAGTGGTACCTTTACCTCCCATAAGATCCTCTTGTGGATTCTTACATTGGAATTGATGATCGCATTATACATGGATTTGACCGAAAAATGGCCATTTTTATGTAGCGACCAAATAAAGCAATCCTTTTCATTTGACAGGGTTATGTTAGCTAGTTGAGAGATCAGATCGTTCCACTCAACTAACTTTGGTCCTACAATTGATCGTCGGAATGAAACATTCAACGGTGTTGTGCTCATAACCTCTGCCAAAGTAGAATGTCTTTTTCGGACCACATTGTACAGAGAAGGATATTGATATTTGAGAGGTTGTAAGCCCAACCATGTATCTTCCCAAAATCTTATTTCCATCCCATTACCAGGTTTAAAAGATCCATACTGAAAAAATTGATCTTTTACTTTCATTAGGCCAGCCCAAAATTGGGATGTTCCTGGTTTGTGTGACATGTGGGAGAGGGGTTTACCCTTTAAGTACTTGTTGCGCAAAAGGTTTTGCCATAGGCCATCACCATTAAGAAGCTTGAATAGCCATTTGCTCAACAAACATCTATTCATGATATCAAGATTTAGGACACCCAGTCCACCTTGATCTTTTGGCCGGCATATATAATCCCATTTTGTTAACTTATATTTCTTTTTCTGGCTATCACTGCTCCAGAAAAAGCTCGATCGGTAGTAATCTAGTCTTTGAAGTACACCTCGAGGTATTTCAAAAAAGGATAACATGAACATGGGAAGACTCGAAAGAACCAAGTTAAGAAGAACCAATCTCCCACCATAGGAGCTGTTTTTGCCCTTCCATGCGCTAAGTTTTCTTTGAAACCTATCCTCCACACATTTCCAATCAAAATTTCTGAGTTTTCGATAGTGTATGGGGATTCCTAAGTATTTGAATGGAAAGGAACCAGAATTACAACCAAACAGTTGTCTATATTGGTCCTCCATTTCCTTGGCTCCCCCAAAGCAGAAAATTTCACTTTTATGAAAGTTTATTTTCAGCCCCGAGAGATGTTCAAACACACAAAGAATGGCCTTCATGTTTTTTGCTTGTTCAAAATCATGTTCAAGAAATATTATTGTATCGTCGGCATATTGGAGAATGGACAAACCATCATCCACTAAGTGTGGAATTACCCCTCTAATTTGGCCATCGACTTTGACTTTTTCAATAAGAATGGCTAACATATCAGCCACTATGTTAAAAAGAATTGGGGACATTGGATCCCCTTGTCTCAAGCCTTTGCGTGTCCGGAAATTTTTTCCTACATTATCATTGACTTTGACACTTACAGTTCCTCCTTCCACCCAGTTGGAAATCCAATTGCACCACGATTGTGAAAACCCTTTCATTCGTAATGTCTGCTGAAGGAACTGCCATTTAACTTTGTCATAAGCCTTTTCAAAGTCAATTTTGAATATGATACCATCCATTTTCTTTGTGTGTAACTCATGGACAGTCTCATGCAAAATCACCACCCCTTCCATGATATTTCTATCTGGCAAAAACGCTGTTTGGGTTGGGCGAATGACTTTGTGAGCAACCGTTGTAATCCTATTGGTGTCCACTTTTGTAAAAATTTTAAAGCTGACATTCAGTAGGCAAATAGGCCTATATTGTTGAATTTGATTTGCATCAGCCTTTTTTGGCAATAGCGCGATGATCCCAAAGTTTAGGTTATAAAGGGATAATGTCCCTTTATGAAATTCTCTAAATAGAGCCATGAGATCATTCTTAACAATCTCCCAAAAGACCTGATAAAACTCTGCAGGAAAGCCATCTGGACCTAGGGAGGAGTTATGATCCATTTGAAAAATTGCCTCTTTGACTTCCTTTTCTGAAAATTCAGCAGTAAGGATGTCATTTTCCAAGTCGGACACTTGAGGAATATCATCAGTCCATCCCTCTATCATGGATACATGATTATGATCTGGAGGACCAAATAATCCTTTATAATAATTGGTGATGTATTCTTTGAGATTCCCCTCACCCGTTATTATAGTGTCCTCTTGTTCCAACTGGAAAATCATCTGCTTACGATGTTTACCATTGTCTATCAAGTGATAATATTTAGTATTACTATCCCCTTGGAGTAAATGATTTGTCTTAGATCGCTGGTACCAATACAACTCTTCGTCCCTTAACAGTTTTGCCAAATCATTTTTGACCTGCTTCAACGAAGAGTTATGTGTTTGGCTTTTTTGTCTAGTGTGTTAATTAAAACTAAAAGCTTTATTTTTTGTTTTTTATATGTGCCACTTAAACTTCGCGCCCACCCTCTTAAATGTTGCCTAAGGTGGACAATCTTGTGTTTCCAACGTTCCATAGGATTCCTTCCCTTGTTTATGCTTTGCCACTCTTTGGCTACCATCTCAAAGAATCCATCCCGCTCTAGCCAGCCTAATTCAAAACGAAATGGCGGCTGATTGCCAAAATGTGCATGCGATCCGGATCTCAGTATAATTGGAGAGTGGTCTGAAATGGCTCGAGGTAAGGCTTGACACGTAACTAAAGGATATTTTTGCTCCCAGTCAGTGTTCATTAACACTCTATCCAACTTCTCATAAGTTGTATTTTCGAGGTTCTTGGCCCAGGTGAATTGTCTCCCCGAAAGATAATCTCTCTCAAATTGAGACTATTGATGACCGCATTAAAAAGAAAAGGCCAACGAGGGTCAAAAGAATTATTATTCTTTTCTTCGGGTGATCTAATGATATTAAAGTCCCCCCCTACCAATAGAGGGTATGACTCCTTACCACAAGTCTGAGCTAGTTCCGTCAAAAATTATTCTTTTAACTCGGGTTGAGCAGCACCATATACTGCCATTAAAACCCATTTGAAACCATCCTCTTTATTTCTTCGAAGAAACTTCACATAGAAGTCCCCTTCTGAAATTTCACCTATATCAAAAACATTTAAATTTACTCCTAAAAGTATTCCTCCTGATCGCCCGATAGGAGGTTTCTCATGCCAAAGAAAATCTTTTCCACCACAAAGGTTTTTAAGATTTAAAGGGGTGAATGATGGTTTTCTAGTCTCAAGAATGGCAATAAAATCCAAATTTTGCTCCTTAACATATTCAGATATAAATCTAAATTTAGATGCATCACCAAAGCCACAACTATTCCAAAATATTCCTTTCATTTCTTAAACTTATTAGCTTTCTTTTTTGGACCAGTCAAAAGAGGACATACCACTTTATGTTTGACTTTGGTCGAAATCTTCCTCATTTGAGGTATGGCCTGAGAATCCATAGACTCATCGTCATTACTCTCAGCCTCTTCTAGCCAGTCACTACATAAGTGCTGGAGAGAAGACAATTTTAACAATTCATCATTGCTTTTATCTACATTACTAGTAGACGCTACAGCACTACTATAAAGAGTAGCAAATCTATCCACTTCTGAAATTTTAATCTGGTTAATGGACTCCTTTATTTCTAAATCATTCTTTCCTAGAGAAACCCCTAATTTAGAAAAATTTGCAGCAAGAGTCTTATCTGGAATTGAAGCAACAGAATTTGTGGTATTAAACTTGTTACCTGTTAGCGTCTCGAGGTTATGAACCTTTTTAAGCAGCTCTGCCCGGTTTGCCACCGGCGCATCTGCATTTGCCATCGCCTTCTGTCTTTCACTTTGCCTAGTTGGAATAGGGTCCACTGGGCGACGAGGTCGCCTTCTTGTCGGGGATCGAGCTCCAACTGCCTGTGCTGCATCCTGGGCTTTAGATGTGGCAGCACTGGAGGCACTAAGTTGGTCTTCATTGGTTGCTAGTACTGCCATCAAGTTCTTAGTCGATGTTACTCTTCCATCGCCTGCAAGCTGGCTATTCTTGGGGAGCAATTCAGACTGCACGTTGCAGTCCAATACATGCTCCACGGGAGACAAGAAGCTAGCTGAAACATGCTGTAATTCTTGTGCCATGCTGACAGGTTCTTGTTGTTGCTCTTTGCCATTCGTAACCACCTCATCTGTTCCTGCTAGCTGCACAGCAACCTCAGTAGAAAGTACCTTAGTCGTTGCCAACTTCGCTAGCTGTGTCGAAACCTCGTCGGAGTACACCACCTCACCGACAGCCTCCTTGGTTGACTCGGAGTTTCCTGTCCCTTGGGCTCCCAATTGACTCATGGGCGTTTCCAACACCACGGAGGAGTATGAGGCAAACGCTTCCAACTCCGTTGTTGTAGCAGGCGTATCTGAGCTAGGAGACGGTGAAAATGCTTCATTATCTAGAACCATATTATTGGTGCGCGTTGAGGGCAGCTTAGCTGGCGCTAAGCCTCCTATTTCCATCCTTAGCGACCCATCAGAACCATTCTTTTGGCGTTTTGGGTCCCTATCTTCCATGTGAACATCATGATCACCACCATTTTTTCTTTCTCCGTCCTGGTCAATATCATCAATCTTCTTCTTTCCTTTCCCATCCACCTCAGGCAATTCCGGTTCAAAGAAGATTTCATAGCCATGGTTTCGGACAACAACGTAAACACTAGGTGGTAAATCTGCTAACTCATCAACTGCCACCTGCATCCTAACCACACCATTTTTCCTGAGATAAATCATGTCCACAGTTGTTGTTTGACCAATGACAGAACCAACAGCATGTAGACTGAGAAAGTCTCTAATCTCATATGACACTCCATAAACTTTAAACCAAGTTTTCTTTAGAACAAACTTCGCTTCAATCTCTTGCTCCCACTTGTCAATGACTAGGTTCACATTAAAGTCAAAACTAGGAACACTGCCAACCCTACGCAACCTGTCTAATTCGATCACAGAGGGAAATTGAACCATATAAGTGTCTGGAGCAGTCTCCTTAACATCCCATTGGAACCTAACCGGCACCAACCTTCGCAATTCAATGATCAAGTTGTCCACAGAAATGTGGCCATTCTCCACCCGGATAATTGCTGTTTTGTTGTGTTCCCTGGGTTTCACTGCCCCTGTTGTTGGCGTGGGGATCATGAAAAAGCCTCCACCATCAACTCCCCATCCACACATGCTTGCTGTGGGTTTGGGAGCGAGTAAAAGCGGGCATGAAAGTGCAGTATGTTCAGGTGCTTCACAAATATCACACAAAATCTTTGTGCACTCTGAAACAGCATGGCTCTTCTCCTTGCATCTGAAACAACGCCCTTTTGACGCCTTTGAAGAAGTGCCAGCCTCTGCAGTCACTATGTCAACCCTAGACTCTCCTCTTGGAACATCAGTACCTGATGCTGTTGCTGCATTCAGATTCACAGCGAACTGACCATCCGGACCTCTGTTACTGTCTCCGCCACGGCCTTGATGACCACGGCCGGAAGCACCACCACTGCCATTCCCGGTAGCCGCTCCAGACAAAGCCGTGTTCCCGGGATGTCAACCTCTGCCGCGAGGCCGCCACGGTCCTCTCCCCCGCGGCCGCCCAGCGCCACCTTCTCCCCTGCCTGGATTGAACACGCCGCCACGGCCGTCACCATCCTGGCCATCGCCGCCGCTGCCGGTACCACGGCCGCCGCCATATCGTCCTCCACCACCAGCCATCTCACCCGCTCGCACCACTTCCGCAAAAGATCGCTTGGGGTTGATTGGTCGACGCTGTTTACGAGCTAGGGCAAGCAGCGCCTTTGGTTGTCGCTTGTAGAGGCCATCGCCAGGGCCCTTAGACTGGAGCCCATTAGGCGGCTGGGCCCGCAT
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| CDS seq | ATGCGGGCCCAGCCGCCTAATGGGCTCCAGTCTAAGGGCCCTGGCGATGGCCTCTACAAGCGACAACCAAAGGCGCTGCTTGCCCTAGCTCGTAAACAGCGTCGACCAATCAACCCCAAGCGATCTTTTGCGGAAGTGGTGCGAGCGGGTGAGATGGCTGGTGGTGGAGGACGATATGGCGGCGGCCGTGGTACCGGCAGCGGCGGCGATGGCCAGGATGGTGACGGCCGTGGCGGCGTGTTCAATCCAGGCAGGGGAGAAGCGGCTACCGGGAATGGCAGTGGTGGTGCTTCCGGCCGTGGTCATCAAGGCCGTGGCGGAGACAGTAACAGAGGTCCGGATGGTCAGTTCGCTGTGAATCTGAATGCAGCAACAGCATCAGGTACTGATGTTCCAAGAGGAGAGTCTAGGGTTGACATAGTGACTGCAGAGGCTGGCACTTCTTCAAAGGCGTCAAAAGGGCGTTGTTTCAGATGCAAGGAGAAGAGCCATGCTGTTTCAGAGTGCACAAAGATTTTGTGTGATATTTGTGAAGCACCTGAACATACTGCACTTTCATGCCCGCTTTTACTCGCTCCCAAACCCACAGCAAGCATGTGTGGATGGGGAGTTGATGGTGGAGGCTTTTTCATGATCCCCACGCCAACAACAGGGGCAGTGAAACCCAGGGAACACAACAAAACAGCAATTATCCGGGTGGAGAATGGCCACATTTCTGTGGACAACTTGATCATTGAATTGCGAAGGTTGGTGCCGGTTAGGTTCCAATGGGATGTTAAGGAGACTGCTCCAGACACTTATATGGTTCAATTTCCCTCTGTGATCGAATTAGACAGGTTGCGTAGGGTTGGCAGTGTTCCTAGTTTTGACTTTAATGTGAACCTAGTCATTGACAAGTGGGAGCAAGAGATTGAAGCGAAGTTTGTTCTAAAGAAAACTTGGTTTAAAGTTTATGGAGTGTCATATGAGATTAGAGACTTTCTCAGTCTACATGCTGTTGGTTCTGTCATTGGTCAAACAACAACTGTGGACATGATTTATCTCAGGAAAAATGGTGTGGTTAGGATGCAGGTGGCAGTTGATGAGTTAGCAGATTTACCACCTAGTGTTTACGTTGTTGTCCGAAACCATGGCTATGAAATCTTCTTTGAACCGGAATTGCCTGAGGTGGATGGGAAAGGAAAGAAGAAGATTGATGATATTGACCAGGACGGAGAAAGAAAAAATGGTGGTGATCATGATGTTCACATGGAAGATAGGGACCCAAAACGCCAAAAGAATGGTTCTGATGGGTCGCTAAGGATGGAAATAGGAGGCTTAGCGCCAGCTAAGCTGCCCTCAACGCGCACCAATAATATGGTTCTAGATAATGAAGCATTTTCACCGTCTCCTAGCTCAGATACGCCTGCTACAACAACGGAGTTGGAAGCGTTTGCCTCATACTCCTCCGTGGTGTTGGAAACGCCCATGAGTCAATTGGGAGCCCAAGGGACAGGAAACTCCGAGTCAACCAAGGAGGCTGTCGGTGAGGTGGTGTACTCCGACGAGGTTTCGACACAGCTAGCGAAGTTGGCAACGACTAAGGTACTTTCTACTGAGGTTGCTGTGCAGCTAGCAGGAACAGATGAGGTGGTTACGAATGGCAAAGAGCAACAACAAGAACCTGTCAGCATGGCACAAGAATTACAGCATGTTTCAGCTAGCTTCTTGTCTCCCGTGGAGCATGTATTGGACTGCAACGTGCAGTCTGAATTGCTCCCCAAGAATAGCCAGCTTGCAGGCGATGGAAGAGTAACATCGACTAAGAACTTGATGGCAGTACTAGCAACCAATGAAGACCAACTTAGTGCCTCCAGTGCTGCCACATCTAAAGCCCAGGATGCAGCACAGGCAGTTGGAGCTCGATCCCCGACAAGAAGGCGACCTCGTCGCCCAGTGGACCCTATTCCAACTAGGCAAAGTGAAAGACAGAAGGCGATGGCAAATGCAGATGCGCCGGTGGCAAACCGGGCAGAGCTGCTTAAAAAGGTTCATAACCTCGAGACGCTAACAGGGGTTTCTCTAGGAAAGAATGATTTAGAAATAAAGGAGTCCATTAACCAGATTAAAATTTCAGAAGTGGATAGATTTGCTACTCTTTATAGTAGTGCTGTAGCGTCTACTAGTAATGTAGATAAAAGCAATGATGAATTGTTAAAATTGTCTTCTCTCCAGCACTTATGTAGTGACTGGCTAGAAGAGGCTGAGAGTAATGACGATGAGTCTATGGATTCTCAGGCCATACCTCAAATGAGGAAGATTTCGACCAAAGTCAAACATAAAGTGGTCAAAAATGATTTGGCAAAACTGTTAAGGGACGAAGAGTTGTATTGGTACCAGCGATCTAAGACAAATCATTTACTCCAAGGGGATAGTAATACTAAATATTATCACTTGATAGACAATGGTAAACATCGTAAGCAGATGATTTTCCAGTTGGAACAAGAGGACACTATAATAACGGGTGAGGGGAATCTCAAAGAATACATCACCAATTATTATAAAGGATTATTTGGTCCTCCAGATCATAATCATGTATCCATGATAGAGGGATGGACTGATGATATTCCTCAAGTGTCCGACTTGGAAAATGACATCCTTACTGCTGAATTTTCAGAAAAGGAAGTCAAAGAGGCAATTTTTCAAATGGATCATAACTCCTCCCTAGGTCCAGATGGCTTTCCTGCAGAGTTTTATCAGGTCTTTTGGGAGATTGTTAAGAATGATCTCATGGCTCTATTTAGAGAATTTCATAAAGGGACATTATCCCTTTATAACCTAAACTTTGGGATCATCGCGCTATTGCCAAAAAAGGCTGATGCAAATCAAATTCAACAATATAGGCCTATTTGCCTACTGAATGTCAGCTTTAAAATTTTTACAAAAGTGGACACCAATAGGATTACAACGGTTGCTCACAAAGTCATTCGCCCAACCCAAACAGCGTTTTTGCCAGATAGAAATATCATGGAAGGGGTGGTGATTTTGCATGAGACTGTCCATGAGTTACACACAAAGAAAATGGATGGTATCATATTCAAAATTGACTTTGAAAAGGCTTATGACAAAGTTAAATGGCAGTTCCTTCAGCAGACATTACGAATGAAAGGGTTTTCACAATCGTGGTGCAATTGGATTTCCAACTGGGTGGAAGGAGGAACTGTAAGTGTCAAAGTCAATGATAATGTAGGAAAAAATTTCCGGACACGCAAAGGCTTGAGACAAGGGGATCCAATGTCCCCAATTCTTTTTAACATAGTGGCTGATATGTTAGCCATTCTTATTGAAAAAGTCAAAGTCGATGGCCAAATTAGAGGGGTAATTCCACACTTAGTGGATGATGGTTTGTCCATTCTCCAATATGCCGACGATACAATAATATTTCTTGAACATGATTTTGAACAAGCAAAAAACATGAAGGCCATTCTTTGTGTGTTTGAACATCTCTCGGGGCTGAAAATAAACTTTCATAAAAGTGAAATTTTCTGCTTTGGGGGAGCCAAGGAAATGGAGGACCAATATAGACAACTGTTTGGTTGTAATTCTGGTTCCTTTCCATTCAAATACTTAGGAATCCCCATACACTATCGAAAACTCAGAAATTTTGATTGGAAATGTGTGGAGGATAGGTTTCAAAGAAAACTTAGCGCATGGAAGGGCAAAAACAGCTCCTATGGTGGGAGATTGGTTCTTCTTAACTTGGTTCTTTCGAGTCTTCCCATGTTCATGTTATCCTTTTTTGAAATACCTCGAGGTGTACTTCAAAGACTAGATTACTACCGATCGAGCTTTTTCTGGAGCAGTGATAGCCAGAAAAAGAAATATAAGTTAACAAAATGGGATTATATATGCCGGCCAAAAGATCAAGGTGGACTGGGTGTCCTAAATCTTGATATCATGAATAGATGTTTGTTGAGCAAATGGCTATTCAAGCTTCTTAATGGTGATGGCCTATGGCAAAACCTTTTGCGCAACAAGTACTTAAAGGGTAAACCCCTCTCCCACATGTCACACAAACCAGGAACATCCCAATTTTGGGCTGGCCTAATGAAAGTAAAAGATCAATTTTTTCAGTATGGATCTTTTAAACCTGGTAATGGGATGGAAATAAGATTTTGGGAAGATACATGGTTGGGCTTACAACCTCTCAAATATCAATATCCTTCTCTGTACAATGTGGTCCGAAAAAGACATTCTACTTTGGCAGAGGTTATCTTCATGTGTTCCAATTGGCTCCACTCTTGGTGTATGATGCTTTCACAGGAACAACAGGATACTATGCGCAATGGTGCTACACGCTTGGAAATAGTAGCCAAGGAACTTTTATTTCATTTTGGATGGCGTAGTACCTACAGAATTTCGTGA
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| Protein seq | MRAQPPNGLQSKGPGDGLYKRQPKALLALARKQRRPINPKRSFAEVVRAGEMAGGGGRYGGGRGTGSGGDGQDGDGRGGVFNPGRGEAATGNGSGGASGRGHQGRGGDSNRGPDGQFAVNLNAATASGTDVPRGESRVDIVTAEAGTSSKASKGRCFRCKEKSHAVSECTKILCDICEAPEHTALSCPLLLAPKPTASMCGWGVDGGGFFMIPTPTTGAVKPREHNKTAIIRVENGHISVDNLIIELRRLVPVRFQWDVKETAPDTYMVQFPSVIELDRLRRVGSVPSFDFNVNLVIDKWEQEIEAKFVLKKTWFKVYGVSYEIRDFLSLHAVGSVIGQTTTVDMIYLRKNGVVRMQVAVDELADLPPSVYVVVRNHGYEIFFEPELPEVDGKGKKKIDDIDQDGERKNGGDHDVHMEDRDPKRQKNGSDGSLRMEIGGLAPAKLPSTRTNNMVLDNEAFSPSPSSDTPATTTELEAFASYSSVVLETPMSQLGAQGTGNSESTKEAVGEVVYSDEVSTQLAKLATTKVLSTEVAVQLAGTDEVVTNGKEQQQEPVSMAQELQHVSASFLSPVEHVLDCNVQSELLPKNSQLAGDGRVTSTKNLMAVLATNEDQLSASSAATSKAQDAAQAVGARSPTRRRPRRPVDPIPTRQSERQKAMANADAPVANRAELLKKVHNLETLTGVSLGKNDLEIKESINQIKISEVDRFATLYSSAVASTSNVDKSNDELLKLSSLQHLCSDWLEEAESNDDESMDSQAIPQMRKISTKVKHKVVKNDLAKLLRDEELYWYQRSKTNHLLQGDSNTKYYHLIDNGKHRKQMIFQLEQEDTIITGEGNLKEYITNYYKGLFGPPDHNHVSMIEGWTDDIPQVSDLENDILTAEFSEKEVKEAIFQMDHNSSLGPDGFPAEFYQVFWEIVKNDLMALFREFHKGTLSLYNLNFGIIALLPKKADANQIQQYRPICLLNVSFKIFTKVDTNRITTVAHKVIRPTQTAFLPDRNIMEGVVILHETVHELHTKKMDGIIFKIDFEKAYDKVKWQFLQQTLRMKGFSQSWCNWISNWVEGGTVSVKVNDNVGKNFRTRKGLRQGDPMSPILFNIVADMLAILIEKVKVDGQIRGVIPHLVDDGLSILQYADDTIIFLEHDFEQAKNMKAILCVFEHLSGLKINFHKSEIFCFGGAKEMEDQYRQLFGCNSGSFPFKYLGIPIHYRKLRNFDWKCVEDRFQRKLSAWKGKNSSYGGRLVLLNLVLSSLPMFMLSFFEIPRGVLQRLDYYRSSFFWSSDSQKKKYKLTKWDYICRPKDQGGLGVLNLDIMNRCLLSKWLFKLLNGDGLWQNLLRNKYLKGKPLSHMSHKPGTSQFWAGLMKVKDQFFQYGSFKPGNGMEIRFWEDTWLGLQPLKYQYPSLYNVVRKRHSTLAEVIFMCSNWLHSWCMMLSQEQQDTMRNGATRLEIVAKELLFHFGWRSTYRIS |
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| Function | LINE-1 reverse transcriptase homolog [UniProtKB/Swiss-Prot:P08548] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g39400 | LOC_Os06g39400.1 | Chr06 | 23382205 | 23388387 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGGGCCCAGCCGCCTAATGGGCTCCAGTCTAAGGGCCCTGGCGATGGCCTCTACAAGCGACAACCAAAGGCGCTGCTTGCCCTAGCTCGTAAACAGCGTCGACCAATCAACCCCAAGCGATCTTTTGCGGAAGTGGTGCGAGCGGGTGAGATGGCTGGTGGTGGAGGACGATATGGCGGCGGCCGTGGTACCGGCAGCGGCGGCGATGGCCAGGATGGTGACGGCCGTGGCGGCGTGTTCAATCCAGGCAGGGGAGAAGCGGCTACCGGGAATGGCAGTGGTGGTGCTTCCGGCCGTGGTCATCAAGGCCGTGGCGGAGACAGTAACAGAGGTCCGGATGGTCAGTTCGCTGTGAATCTGAATGCAGCAACAGCATCAGGTACTGATGTTCCAAGAGGAGAGTCTAGGGTTGACATAGTGACTGCAGAGGCTGGCACTTCTTCAAAGGCGTCAAAAGGGCGTTGTTTCAGATGCAAGGAGAAGAGCCATGCTGTTTCAGAGTGCACAAAGATTTTGTGTGATATTTGTGAAGCACCTGAACATACTGCACTTTCATGCCCGCTTTTACTCGCTCCCAAACCCACAGCAAGCATGTGTGGATGGGGAGTTGATGGTGGAGGCTTTTTCATGATCCCCACGCCAACAACAGGGGCAGTGAAACCCAGGGAACACAACAAAACAGCAATTATCCGGGTGGAGAATGGCCACATTTCTGTGGACAACTTGATCATTGAATTGCGAAGGTTGGTGCCGGTTAGGTTCCAATGGGATGTTAAGGAGACTGCTCCAGACACTTATATGGTTCAATTTCCCTCTGTGATCGAATTAGACAGGTTGCGTAGGGTTGGCAGTGTTCCTAGTTTTGACTTTAATGTGAACCTAGTCATTGACAAGTGGGAGCAAGAGATTGAAGCGAAGTTTGTTCTAAAGAAAACTTGGTTTAAAGTTTATGGAGTGTCATATGAGATTAGAGACTTTCTCAGTCTACATGCTGTTGGTTCTGTCATTGGTCAAACAACAACTGTGGACATGATTTATCTCAGGAAAAATGGTGTGGTTAGGATGCAGGTGGCAGTTGATGAGTTAGCAGATTTACCACCTAGTGTTTACGTTGTTGTCCGAAACCATGGCTATGAAATCTTCTTTGAACCGGAATTGCCTGAGGTGGATGGGAAAGGAAAGAAGAAGATTGATGATATTGACCAGGACGGAGAAAGAAAAAATGGTGGTGATCATGATGTTCACATGGAAGATAGGGACCCAAAACGCCAAAAGAATGGTTCTGATGGGTCGCTAAGGATGGAAATAGGAGGCTTAGCGCCAGCTAAGCTGCCCTCAACGCGCACCAATAATATGGTTCTAGATAATGAAGCATTTTCACCGTCTCCTAGCTCAGATACGCCTGCTACAACAACGGAGTTGGAAGCGTTTGCCTCATACTCCTCCGTGGTGTTGGAAACGCCCATGAGTCAATTGGGAGCCCAAGGGACAGGAAACTCCGAGTCAACCAAGGAGGCTGTCGGTGAGGTGGTGTACTCCGACGAGGTTTCGACACAGCTAGCGAAGTTGGCAACGACTAAGGTACTTTCTACTGAGGTTGCTGTGCAGCTAGCAGGAACAGATGAGGTGGTTACGAATGGCAAAGAGCAACAACAAGAACCTGTCAGCATGGCACAAGAATTACAGCATGTTTCAGCTAGCTTCTTGTCTCCCGTGGAGCATGTATTGGACTGCAACGTGCAGTCTGAATTGCTCCCCAAGAATAGCCAGCTTGCAGGCGATGGAAGAGTAACATCGACTAAGAACTTGATGGCAGTACTAGCAACCAATGAAGACCAACTTAGTGCCTCCAGTGCTGCCACATCTAAAGCCCAGGATGCAGCACAGGCAGTTGGAGCTCGATCCCCGACAAGAAGGCGACCTCGTCGCCCAGTGGACCCTATTCCAACTAGGCAAAGTGAAAGACAGAAGGCGATGGCAAATGCAGATGCGCCGGTGGCAAACCGGGCAGAGCTGCTTAAAAAGGTTCATAACCTCGAGACGCTAACAGGGGTTTCTCTAGGAAAGAATGATTTAGAAATAAAGGAGTCCATTAACCAGATTAAAATTTCAGAAGTGGATAGATTTGCTACTCTTTATAGTAGTGCTGTAGCGTCTACTAGTAATGTAGATAAAAGCAATGATGAATTGTTAAAATTGTCTTCTCTCCAGCACTTATGTAGTGACTGGCTAGAAGAGGCTGAGAGTAATGACGATGAGTCTATGGATTCTCAGGCCATACCTCAAATGAGGAAGATTTCGACCAAAGTCAAACATAAAGTGGTCAAAAATGATTTGGCAAAACTGTTAAGGGACGAAGAGTTGTATTGGTACCAGCGATCTAAGACAAATCATTTACTCCAAGGGGATAGTAATACTAAATATTATCACTTGATAGACAATGGTAAACATCGTAAGCAGATGATTTTCCAGTTGGAACAAGAGGACACTATAATAACGGGTGAGGGGAATCTCAAAGAATACATCACCAATTATTATAAAGGATTATTTGGTCCTCCAGATCATAATCATGTATCCATGATAGAGGGATGGACTGATGATATTCCTCAAGTGTCCGACTTGGAAAATGACATCCTTACTGCTGAATTTTCAGAAAAGGAAGTCAAAGAGGCAATTTTTCAAATGGATCATAACTCCTCCCTAGGTCCAGATGGCTTTCCTGCAGAGTTTTATCAGGTCTTTTGGGAGATTGTTAAGAATGATCTCATGGCTCTATTTAGAGAATTTCATAAAGGGACATTATCCCTTTATAACCTAAACTTTGGGATCATCGCGCTATTGCCAAAAAAGGCTGATGCAAATCAAATTCAACAATATAGGCCTATTTGCCTACTGAATGTCAGCTTTAAAATTTTTACAAAAGTGGACACCAATAGGATTACAACGGTTGCTCACAAAGTCATTCGCCCAACCCAAACAGCGTTTTTGCCAGATAGAAATATCATGGAAGGGGTGGTGATTTTGCATGAGACTGTCCATGAGTTACACACAAAGAAAATGGATGGTATCATATTCAAAATTGACTTTGAAAAGGCTTATGACAAAGTTAAATGGCAGTTCCTTCAGCAGACATTACGAATGAAAGGGTTTTCACAATCGTGGTGCAATTGGATTTCCAACTGGGTGGAAGGAGGAACTGTAAGTGTCAAAGTCAATGATAATGTAGGAAAAAATTTCCGGACACGCAAAGGCTTGAGACAAGGGGATCCAATGTCCCCAATTCTTTTTAACATAGTGGCTGATATGTTAGCCATTCTTATTGAAAAAGTCAAAGTCGATGGCCAAATTAGAGGGGTAATTCCACACTTAGTGGATGATGGTTTGTCCATTCTCCAATATGCCGACGATACAATAATATTTCTTGAACATGATTTTGAACAAGCAAAAAACATGAAGGCCATTCTTTGTGTGTTTGAACATCTCTCGGGGCTGAAAATAAACTTTCATAAAAGTGAAATTTTCTGCTTTGGGGGAGCCAAGGAAATGGAGGACCAATATAGACAACTGTTTGGTTGTAATTCTGGTTCCTTTCCATTCAAATACTTAGGAATCCCCATACACTATCGAAAACTCAGAAATTTTGATTGGAAATGTGTGGAGGATAGGTTTCAAAGAAAACTTAGCGCATGGAAGGGCAAAAACAGCTCCTATGGTGGGAGATTGGTTCTTCTTAACTTGGTTCTTTCGAGTCTTCCCATGTTCATGTTATCCTTTTTTGAAATACCTCGAGGTGTACTTCAAAGACTAGATTACTACCGATCGAGCTTTTTCTGGAGCAGTGATAGCCAGAAAAAGAAATATAAGTTAACAAAATGGGATTATATATGCCGGCCAAAAGATCAAGGTGGACTGGGTGTCCTAAATCTTGATATCATGAATAGATGTTTGTTGAGCAAATGGCTATTCAAGCTTCTTAATGGTGATGGCCTATGGCAAAACCTTTTGCGCAACAAGTACTTAAAGGGTAAACCCCTCTCCCACATGTCACACAAACCAGGAACATCCCAATTTTGGGCTGGCCTAATGAAAGTAAAAGATCAATTTTTTCAGTATGGATCTTTTAAACCTGGTAATGGGATGGAAATAAGATTTTGGGAAGATACATGGTTGGGCTTACAACCTCTCAAATATCAATATCCTTCTCTGTACAATGTGGTCCGAAAAAGACATTCTACTTTGGCAGAGGTTATCTTCATGTGTTCCAATTGGCTCCACTCTTGGTGTATGATGCTTTCACAGGAACAACAGGATACTATGCGCAATGGTGCTACACGCTTGGAAATAGTAGCCAAGGAACTTTTATTTCATTTTGGATGGCGTAGTACCTACAGAATTTCGTGA
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| Protein seq | MRAQPPNGLQSKGPGDGLYKRQPKALLALARKQRRPINPKRSFAEVVRAGEMAGGGGRYGGGRGTGSGGDGQDGDGRGGVFNPGRGEAATGNGSGGASGRGHQGRGGDSNRGPDGQFAVNLNAATASGTDVPRGESRVDIVTAEAGTSSKASKGRCFRCKEKSHAVSECTKILCDICEAPEHTALSCPLLLAPKPTASMCGWGVDGGGFFMIPTPTTGAVKPREHNKTAIIRVENGHISVDNLIIELRRLVPVRFQWDVKETAPDTYMVQFPSVIELDRLRRVGSVPSFDFNVNLVIDKWEQEIEAKFVLKKTWFKVYGVSYEIRDFLSLHAVGSVIGQTTTVDMIYLRKNGVVRMQVAVDELADLPPSVYVVVRNHGYEIFFEPELPEVDGKGKKKIDDIDQDGERKNGGDHDVHMEDRDPKRQKNGSDGSLRMEIGGLAPAKLPSTRTNNMVLDNEAFSPSPSSDTPATTTELEAFASYSSVVLETPMSQLGAQGTGNSESTKEAVGEVVYSDEVSTQLAKLATTKVLSTEVAVQLAGTDEVVTNGKEQQQEPVSMAQELQHVSASFLSPVEHVLDCNVQSELLPKNSQLAGDGRVTSTKNLMAVLATNEDQLSASSAATSKAQDAAQAVGARSPTRRRPRRPVDPIPTRQSERQKAMANADAPVANRAELLKKVHNLETLTGVSLGKNDLEIKESINQIKISEVDRFATLYSSAVASTSNVDKSNDELLKLSSLQHLCSDWLEEAESNDDESMDSQAIPQMRKISTKVKHKVVKNDLAKLLRDEELYWYQRSKTNHLLQGDSNTKYYHLIDNGKHRKQMIFQLEQEDTIITGEGNLKEYITNYYKGLFGPPDHNHVSMIEGWTDDIPQVSDLENDILTAEFSEKEVKEAIFQMDHNSSLGPDGFPAEFYQVFWEIVKNDLMALFREFHKGTLSLYNLNFGIIALLPKKADANQIQQYRPICLLNVSFKIFTKVDTNRITTVAHKVIRPTQTAFLPDRNIMEGVVILHETVHELHTKKMDGIIFKIDFEKAYDKVKWQFLQQTLRMKGFSQSWCNWISNWVEGGTVSVKVNDNVGKNFRTRKGLRQGDPMSPILFNIVADMLAILIEKVKVDGQIRGVIPHLVDDGLSILQYADDTIIFLEHDFEQAKNMKAILCVFEHLSGLKINFHKSEIFCFGGAKEMEDQYRQLFGCNSGSFPFKYLGIPIHYRKLRNFDWKCVEDRFQRKLSAWKGKNSSYGGRLVLLNLVLSSLPMFMLSFFEIPRGVLQRLDYYRSSFFWSSDSQKKKYKLTKWDYICRPKDQGGLGVLNLDIMNRCLLSKWLFKLLNGDGLWQNLLRNKYLKGKPLSHMSHKPGTSQFWAGLMKVKDQFFQYGSFKPGNGMEIRFWEDTWLGLQPLKYQYPSLYNVVRKRHSTLAEVIFMCSNWLHSWCMMLSQEQQDTMRNGATRLEIVAKELLFHFGWRSTYRIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0204300 | SBH | 1.284468 | 2.967251 | 1.832926 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0204300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007740 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007830 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007910 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007910 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007730 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0392000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0007710 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0414600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0007570 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007850 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007690 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007690 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0000861 | RBH | 0.672189 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007610 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007660 | SBH | 0.0 | 0.0 | 0.0 |
