Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g34560 | OGI:06055940 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:20098734-20100496 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTGCTGTCATTCCCATCCCGATCTGACCGGGCTCCTCCTCCTCGTCTCCTGCTCTCTTCACCGCCGCAGACCAGGTCAGCAGTTGAGCACCATGGCAAGAAAGTTGAGAGGTCAGGCGGCCAGCAGCGGCACGTACGTACCTCGCGCCCAGCACAGCCGCGCAGTCGCAGATCGAGCAGATGTGGTCAGACTCAGAGCTGGACATGTGCGCAACGCTCTCGGCTCAGCCCCTTGGCTGCAGTCTGATGGCATGGAGGCGGATTTCTTCGTAGTCACCGGCGTGGATCGCTCGGAGGCGATACACAGCCGGCAGGGGCAGCGACTCTGCTCGCCGAAGGAATGGGGATGGGCTGTTCATCAGAGCTCGCGCCCCGCCGCCGCCGCCGCAGCCGCGAATTGATCGCTCCATCGATGGGACCAAGTTTGGATGGATAGGATATGGAATCAGTTTTTTTGCAAGGACAAGCTAATAGGGATTACTCTGTTATAATCTACTTCGTATAATCTGCGGTCGGTTTTCAATTTCTTTTAGATTTCTCCGGTGTCCTAAATACAGTCGACATCTTTGCCTTTTGATGAGATTTAGTTAATGTCTTTATTAATCCTTGTACAGTTCCACCATCTATGGTTGGTAGCCTAGCATCCCGTGTGTCTTTTGTCGACTGTCATCCCTATGCATTACTCTCCCGTTGTCAAATAACTAGTATCGTAATAAAAAACAAATTACGTATGTCGTTAATTACATATATTCTTGGGCATCAAGCTTGCTACTAGCTGATTTGATTAACAGGTTTGACCCACAAACATGAGAATTTTCCTGTGCATAAGAAACTTTTGGGCAGCATATATATGTAAGTTTCAGTTTGAAAATATGAATCACGAAAGGGACGTAAGAGATTAGAGATTTACGAATTGTGCTAATTGAGATCATCAGCTCATGTTCTCTCTGCCAAGCTACATTACATTACACAAGAGATGTAGTCACGGATTAGGTCAGACATGACGAATCTCTAATTCTCTACTAGCTTAATTCGCTTGTCTTTATTTTTAAGATATATATAATGGAAGATGAAAGATACATCTATCGATCCCTCTTCTGACTTTACTTGATAATAATAGGATAAAATCCAGTAGTCTTTCGCTGATCTTTTGCAAATAACTTTAAATTTTTGCAGCCAAAATTCCAATGGACTCTCAAATTCCAGTCTCGAGCTCCCCTCTGAACACCATTTCTTGGCAGCGCGCACAGGCATGAACGGCTTTGCTCCGACCGGCTACCAGCAGCCGCCGCCGCCGCCTGCGGCCAGCGCTTCGCCGGGCGGATGGATCGCGTCGACGGCCATCTTCATGTCCATCTTCTTCTCCACCTTCCTCCTCGCCATGGCGGTCTCCGTCTACTGCTGCCTCCTGTGCAGAGACCGAGTCCGCTCGGACCGCGACGACACCGGCGCCGTCGCCGAGCGCGCACGTGGCGGCGGTATCGTCGCCCCGCTCCCCGTCGAGGCCCTCCCCCCGGCCTACCCTTATGTAGTTGGAAGCTCCGAGGATGGTGGCGCGACGGCGGCGAGCGGCGGCGGGCGGGAGTGCGCGGTGTGCCTGGGCGCGGTGCGGGAGGGGGAGATGGTGCGGCGGCTGCCGGCGTGCGAGCACGTGTACCACGCCGACTGCATCGACCGGTGGCTCGCCGCGCACCGGACGTGCCCGCTGTGCCGGCGAGAGCTTGATCCGGGCAAGAATCCGCCTGATCAGTTGCCGGTTTAA
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| CDS seq | ATGTGCTGTCATTCCCATCCCGATCTGACCGGGCTCCTCCTCCTCGTCTCCTGCTCTCTTCACCGCCGCAGACCAGGTCAGCAGTTGAGCACCATGGCAAGAAAGTTGAGAGGTCAGGCGGCCAGCAGCGGCACCCAAAATTCCAATGGACTCTCAAATTCCAGTCTCGAGCTCCCCTCTGAACACCATTTCTTGGCAGCGCGCACAGGCATGAACGGCTTTGCTCCGACCGGCTACCAGCAGCCGCCGCCGCCGCCTGCGGCCAGCGCTTCGCCGGGCGGATGGATCGCGTCGACGGCCATCTTCATGTCCATCTTCTTCTCCACCTTCCTCCTCGCCATGGCGGTCTCCGTCTACTGCTGCCTCCTGTGCAGAGACCGAGTCCGCTCGGACCGCGACGACACCGGCGCCGTCGCCGAGCGCGCACGTGGCGGCGGTATCGTCGCCCCGCTCCCCGTCGAGGCCCTCCCCCCGGCCTACCCTTATGTAGTTGGAAGCTCCGAGGATGGTGGCGCGACGGCGGCGAGCGGCGGCGGGCGGGAGTGCGCGGTGTGCCTGGGCGCGGTGCGGGAGGGGGAGATGGTGCGGCGGCTGCCGGCGTGCGAGCACGTGTACCACGCCGACTGCATCGACCGGTGGCTCGCCGCGCACCGGACGTGCCCGCTGTGCCGGCGAGAGCTTGATCCGGGCAAGAATCCGCCTGATCAGTTGCCGGTTTAA
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| Protein seq | MCCHSHPDLTGLLLLVSCSLHRRRPGQQLSTMARKLRGQAASSGTQNSNGLSNSSLELPSEHHFLAARTGMNGFAPTGYQQPPPPPAASASPGGWIASTAIFMSIFFSTFLLAMAVSVYCCLLCRDRVRSDRDDTGAVAERARGGGIVAPLPVEALPPAYPYVVGSSEDGGATAASGGGRECAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTCPLCRRELDPGKNPPDQLPV |
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| Function | Putative RING-H2 finger protein ATL12 [UniProtKB/Swiss-Prot:Q9SL78] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g34560 | LOC_Os06g34560.1 | Chr06 | 20098734 | 20100496 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGCTGTCATTCCCATCCCGATCTGACCGGGCTCCTCCTCCTCGTCTCCTGCTCTCTTCACCGCCGCAGACCAGGTCAGCAGTTGAGCACCATGGCAAGAAAGTTGAGAGGTCAGGCGGCCAGCAGCGGCACCCAAAATTCCAATGGACTCTCAAATTCCAGTCTCGAGCTCCCCTCTGAACACCATTTCTTGGCAGCGCGCACAGGCATGAACGGCTTTGCTCCGACCGGCTACCAGCAGCCGCCGCCGCCGCCTGCGGCCAGCGCTTCGCCGGGCGGATGGATCGCGTCGACGGCCATCTTCATGTCCATCTTCTTCTCCACCTTCCTCCTCGCCATGGCGGTCTCCGTCTACTGCTGCCTCCTGTGCAGAGACCGAGTCCGCTCGGACCGCGACGACACCGGCGCCGTCGCCGAGCGCGCACGTGGCGGCGGTATCGTCGCCCCGCTCCCCGTCGAGGCCCTCCCCCCGGCCTACCCTTATGTAGTTGGAAGCTCCGAGGATGGTGGCGCGACGGCGGCGAGCGGCGGCGGGCGGGAGTGCGCGGTGTGCCTGGGCGCGGTGCGGGAGGGGGAGATGGTGCGGCGGCTGCCGGCGTGCGAGCACGTGTACCACGCCGACTGCATCGACCGGTGGCTCGCCGCGCACCGGACGTGCCCGCTGTGCCGGCGAGAGCTTGATCCGGGCAAGAATCCGCCTGATCAGTTGCCGGTTTAA
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| Protein seq | MCCHSHPDLTGLLLLVSCSLHRRRPGQQLSTMARKLRGQAASSGTQNSNGLSNSSLELPSEHHFLAARTGMNGFAPTGYQQPPPPPAASASPGGWIASTAIFMSIFFSTFLLAMAVSVYCCLLCRDRVRSDRDDTGAVAERARGGGIVAPLPVEALPPAYPYVVGSSEDGGATAASGGGRECAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTCPLCRRELDPGKNPPDQLPV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0536600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34880 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0536600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018510 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018340 | RBH | 0.0 | 2.649765 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018490 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018280 | RBH | 0.0 | 0.085021 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018670 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0317400 | RBH | 0.01202 | 0.3449405 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018150 | RBH | 0.0 | 0.257228 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0292800 | RBH | 0 | 0.2167655 | 0.009624 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018170 | RBH | 0.0 | 9.183173 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018920 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018380 | RBH | 0.0 | 0.207073 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018400 | RBH | 0.0 | 0.0 | 0.0 |
