Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g33090 | OGI:06052970 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:19264699-19266383 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGGTGCACCTATAGATGGTTTCAAGCCTGCTGTACCTCACCTACAGATGCACCAACATATTCATCACTTATAGAGGCTTTAGAAGAGGAGGGCAATATAGACATTTTGCATAGCTTTCTCTCCTTGGCTGACCAGATATTATATTTTAGGGAGAATTGCAAATATGCCACTACTTTCAACCCCTAATTCGAAATAGCCATTATAAAAACACAAACTGCAAATTTAAAACTGAAGTTGATTTTCTGTGCTTCTGTTTGCCACTGCCGTCCAAACTGATGCAATTAATAGGACAAAAATAATTAATTTAATGGAAATACAAAGCAACTTGATAAGACTGTTTTGCCCTTGGTTAAGTTTATGTCCTCCCGGCCCTAGGTCCCGACCTAACCACAAGCCAGAACGATCCCCTCCTTCTACCTCTATGAACCATAGATTCCAAATCCTATCATACCTTTTAAATCGTGAGCAAATAAAAATAAAATCAGTTGCAATGAAGTAAGTGATGGCAATGAAGAAAGAGCTGATGGATTTTGGCGAGTAGGCGACGGCAGGTGGCGGGTGTTGTGGTGGTCAGTGTTAGAGTATATGGTAGTTAGAGTTATATTAGGATATGATTGATTTGTGTGGATTACTTCCATATCTGTAATCATTCCTTATCTCCTCGATCTCTATGTACTCATGTATATTTGTCAAATATTTACAGTATTCATGTCTTCCCTATAATATCCGACATAGTATCAGAGCGGGCGACCTAGAGCGGGCATTGTGCATGTATGCGAGTGATTGAACTTCCAGGGCAAAGTGATCTCCCATACATCATAAAAAAATGAATAAACAGATGAAGTACAAAAGAATAATACAGCTTACAGTTTGTTGTACAATTAAATCGAAAGGAATTTCACACTTACAAATGATTCCAAAATAGTTGTGTTGTACTTAATAGTATGGGCATCAATAATGGGTGTTGGCCACCGAGCACTTGAGCCTGACCTCCGCCGGAGTCCACCAATGCTTTGGGCGTATGTTCCCCATCTTAACCATGGCCCTCACGAAGTCGGCGAAGAACACGTCGCCGTTCATGGCGTACGTCTTCACCAGGTCGCCGGTCTCGCACCCCTGGGTGTAGAGCTCCTGGTCGGATGTGAGGAGCCCGCGCCTCGCAAGCAAGTCGATGTAGTAGGCGTTGTCGAACTTGGCCGGCGTCCGCTCGTCGAACGGCGCAGTGGCGTTGCCGTGCTTCTGCTCGCATTCCTGCCGGCGTTGCGCCGCGAAGGATGGGTCGATGCTGTCGCCGCCCTGGCCGACGCGGCTGTAGATGCGGTCGTCGTAGTTCTTGCAGTCATGTGCCATGCCGACGGTGTGCGCACCGGAGAGCGCGGTGAGGTCGCGTTCGTCGAGGCCGTTCTTCTCGAACATCCTGATGAGTTCGGCCAGGCTGTCTTTCGGGTTCGGGAGATCCTTGTTGGCCATGTCTATGCTGGCGGTGAGGGAGTCCTTGCGGCCGAGGAGCACGCCCCAGCTGGGCCCGCTGAGCATCGCGACGGCGTCGCGGGCGGCGAGCGCGAGAACATCGGCGCAGGAGACGGTGGCCGGGCAGCTGCGCTCGAGCTCGGACTTGATGCCGTCGATCACGTCGAAGCCGGCGAGGGTGGCGTTGGGCTCGGCATCCTTCTCGCTCTCCAT
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| CDS seq | ATGGAGAGCGAGAAGGATGCCGAGCCCAACGCCACCCTCGCCGGCTTCGACGTGATCGACGGCATCAAGTCCGAGCTCGAGCGCAGCTGCCCGGCCACCGTCTCCTGCGCCGATGTTCTCGCGCTCGCCGCCCGCGACGCCGTCGCGATGCTCAGCGGGCCCAGCTGGGGCGTGCTCCTCGGCCGCAAGGACTCCCTCACCGCCAGCATAGACATGGCCAACAAGGATCTCCCGAACCCGAAAGACAGCCTGGCCGAACTCATCAGGATGTTCGAGAAGAACGGCCTCGACGAACGCGACCTCACCGCGCTCTCCGGTGCGCACACCGTCGGCATGGCACATGACTGCAAGAACTACGACGACCGCATCTACAGCCGCGTCGGCCAGGGCGGCGACAGCATCGACCCATCCTTCGCGGCGCAACGCCGGCAGGAATGCGAGCAGAAGCACGGCAACGCCACTGCGCCGTTCGACGAGCGGACGCCGGCCAAGTTCGACAACGCCTACTACATCGACTTGCTTGCGAGGCGCGGGCTCCTCACATCCGACCAGGAGCTCTACACCCAGGGGTGCGAGACCGGCGACCTGGTGAAGACGTACGCCATGAACGGCGACGTGTTCTTCGCCGACTTCGTGAGGGCCATGGTTAAGATGGGGAACATACGCCCAAAGCATTGGTGGACTCCGGCGGAGGTGAGGTACAGCAGGCTTGAAACCATCTATAGGTGCACCTAG
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| Protein seq | MESEKDAEPNATLAGFDVIDGIKSELERSCPATVSCADVLALAARDAVAMLSGPSWGVLLGRKDSLTASIDMANKDLPNPKDSLAELIRMFEKNGLDERDLTALSGAHTVGMAHDCKNYDDRIYSRVGQGGDSIDPSFAAQRRQECEQKHGNATAPFDERTPAKFDNAYYIDLLARRGLLTSDQELYTQGCETGDLVKTYAMNGDVFFADFVRAMVKMGNIRPKHWWTPAEVRYSRLETIYRCT |
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| Function | Peroxidase 2 [UniProtKB/Swiss-Prot:Q0D3N0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g33090 | LOC_Os06g33090.1 | Chr06 | 19264699 | 19266383 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGCGAGAAGGATGCCGAGCCCAACGCCACCCTCGCCGGCTTCGACGTGATCGACGGCATCAAGTCCGAGCTCGAGCGCAGCTGCCCGGCCACCGTCTCCTGCGCCGATGTTCTCGCGCTCGCCGCCCGCGACGCCGTCGCGATGCTCAGCGGGCCCAGCTGGGGCGTGCTCCTCGGCCGCAAGGACTCCCTCACCGCCAGCATAGACATGGCCAACAAGGATCTCCCGAACCCGAAAGACAGCCTGGCCGAACTCATCAGGATGTTCGAGAAGAACGGCCTCGACGAACGCGACCTCACCGCGCTCTCCGGTGCGCACACCGTCGGCATGGCACATGACTGCAAGAACTACGACGACCGCATCTACAGCCGCGTCGGCCAGGGCGGCGACAGCATCGACCCATCCTTCGCGGCGCAACGCCGGCAGGAATGCGAGCAGAAGCACGGCAACGCCACTGCGCCGTTCGACGAGCGGACGCCGGCCAAGTTCGACAACGCCTACTACATCGACTTGCTTGCGAGGCGCGGGCTCCTCACATCCGACCAGGAGCTCTACACCCAGGGGTGCGAGACCGGCGACCTGGTGAAGACGTACGCCATGAACGGCGACGTGTTCTTCGCCGACTTCGTGAGGGCCATGGTTAAGATGGGGAACATACGCCCAAAGCATTGGTGGACTCCGGCGGAGGTGAGGTACAGCAGGCTTGAAACCATCTATAGGTGCACCTAG
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| Protein seq | MESEKDAEPNATLAGFDVIDGIKSELERSCPATVSCADVLALAARDAVAMLSGPSWGVLLGRKDSLTASIDMANKDLPNPKDSLAELIRMFEKNGLDERDLTALSGAHTVGMAHDCKNYDDRIYSRVGQGGDSIDPSFAAQRRQECEQKHGNATAPFDERTPAKFDNAYYIDLLARRGLLTSDQELYTQGCETGDLVKTYAMNGDVFFADFVRAMVKMGNIRPKHWWTPAEVRYSRLETIYRCT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0522100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g33100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0522100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0017830 | RBH | 0.0 | 4.757754 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0017650 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0017760 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0017670 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0017820 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0298700 | SBH | 0.03372 | 4.5468835 | 0.071394 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017340 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0274100 | SBH | 0.135472 | 28.198083 | 0.272784 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0017690 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017320 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018030 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017460 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017460 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017650 | RBH | 0.0 | 0.591295 | 0.0 |
