Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g30400 | OGI:06037270 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:17565595-17566008 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTACGCGGCGCGGGCGTTGGCGGCGAGCTTGCCGGAGACCGGGAGAGGGCTGCGCATCGGGGAGCGCGGCGGCGGCGGGTGCGCGAGGCGGCGGCCGTCGGCGTCGTAGTAGATCACCCCGGAGAAGTCCAGCGGCTGGCACCGCTCACCCATCAGGATCTCCTTCCGCCACAGCCCGCCGGAGTCCCCCTCCTCCCGCCTCGCCGCAGCCGCCGCCGCCTTCACCTTCGCCGTCGCCGCGGCGGGCAGCGACAGCGCCTTCCTCCACGGCACCACGGCGCGGGACGACGCCCCCTGCTTCCCCGCCCCCGCGGCGGCGGACGACACCCGCCTCGCCGCGCGCTGCAGCCGGCGCGTGCACGTGCTCATCAGCGCCGCCACCGCGTGCAGGAGGCTCGCGCCGCCGGCCAT
More
|
||||||||||
| CDS seq | ATGGCCGGCGGCGCGAGCCTCCTGCACGCGGTGGCGGCGCTGATGAGCACGTGCACGCGCCGGCTGCAGCGCGCGGCGAGGCGGGTGTCGTCCGCCGCCGCGGGGGCGGGGAAGCAGGGGGCGTCGTCCCGCGCCGTGGTGCCGTGGAGGAAGGCGCTGTCGCTGCCCGCCGCGGCGACGGCGAAGGTGAAGGCGGCGGCGGCTGCGGCGAGGCGGGAGGAGGGGGACTCCGGCGGGCTGTGGCGGAAGGAGATCCTGATGGGTGAGCGGTGCCAGCCGCTGGACTTCTCCGGGGTGATCTACTACGACGCCGACGGCCGCCGCCTCGCGCACCCGCCGCCGCCGCGCTCCCCGATGCGCAGCCCTCTCCCGGTCTCCGGCAAGCTCGCCGCCAACGCCCGCGCCGCGTACTAG
More
|
||||||||||
| Protein seq | MAGGASLLHAVAALMSTCTRRLQRAARRVSSAAAGAGKQGASSRAVVPWRKALSLPAAATAKVKAAAAAARREEGDSGGLWRKEILMGERCQPLDFSGVIYYDADGRRLAHPPPPRSPMRSPLPVSGKLAANARAAY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g30400 | LOC_Os06g30400.1 | Chr06 | 17565595 | 17566008 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCGGCGGCGCGAGCCTCCTGCACGCGGTGGCGGCGCTGATGAGCACGTGCACGCGCCGGCTGCAGCGCGCGGCGAGGCGGGTGTCGTCCGCCGCCGCGGGGGCGGGGAAGCAGGGGGCGTCGTCCCGCGCCGTGGTGCCGTGGAGGAAGGCGCTGTCGCTGCCCGCCGCGGCGACGGCGAAGGTGAAGGCGGCGGCGGCTGCGGCGAGGCGGGAGGAGGGGGACTCCGGCGGGCTGTGGCGGAAGGAGATCCTGATGGGTGAGCGGTGCCAGCCGCTGGACTTCTCCGGGGTGATCTACTACGACGCCGACGGCCGCCGCCTCGCGCACCCGCCGCCGCCGCGCTCCCCGATGCGCAGCCCTCTCCCGGTCTCCGGCAAGCTCGCCGCCAACGCCCGCGCCGCGTACTAG
More
|
|||||||
| Protein seq | MAGGASLLHAVAALMSTCTRRLQRAARRVSSAAAGAGKQGASSRAVVPWRKALSLPAAATAKVKAAAAAARREEGDSGGLWRKEILMGERCQPLDFSGVIYYDADGRRLAHPPPPRSPMRSPLPVSGKLAANARAAY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.205173 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0499100 | RBH | 0.0 | 0.0 | 1.170152 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48150 | RBH | 0.286320 | 0.113543 | 0.261118 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0499100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0014030 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013840 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013980 | RBH | 0.0 | 2.777599 | 0.827622 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013920 | RBH | 0.0 | 0.108034 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0014010 | RBH | 0.0 | 10.512665 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013510 | RBH | 0.115630 | 0.575696 | 0.147286 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0014070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013960 | RBH | 0.0 | 4.745221 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013690 | RBH | 0.0 | 22.470629 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0014290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013680 | RBH | 0.0 | 0.0 | 0.959035 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013990 | RBH | 0.0 | 0.0 | 1.432812 |
