Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os06g25900 OGI:06043020 | 9/16 Nipponbare | IRGSP 1.0 | MSU Chr06:15148051-15152307
Gene Symbol -
DNA seq

TCAATCACTCTTTGCCCTGTAGTTCCCAGGGAGTCCCACATATGTGAAAGGCAGTTTTCCAACAGAACATCCCAGAAATCCTGCAATTAGATCTGGCTTTTCTTCAGAGAGATTGAGGGGATAAAGACTGGATTTTGCATAATTAACTTTTAGGCCAATCGATTGAGCAAATATGTTCAGTAGTGCCTTGAAGCAGAAGATTTCTTTTTTTGAAGCTTTTAACAGGATCAAAGTGTCATCAGCAAATTGGATGTTGGGGAACCCACTTCCATCATTTTCATTGACTGGCTTTGAAATTAAATCAAGATTAAAAGCCATGTTTACTATTCTTTGTAAGAGTTTAGCCCCTAGAACAAAAAGAAGTGGAGACAAATGATCTCCCTGCCTAACTCCTCTCTTGTAATTAAAAGAGATACCAGGAACCCCATTCAACAGAACTACAGAGCTTGTCGAGGAGAATACCATTTGCATCCAATTAAGCCATTTTTGTGGGAACCCCATGCTTTGCATTACAGATAAGATGGCCGTGTGTTCAATTGTATCAAAAGCTTTTTCAATTGTCTTGAGGATGATTATTTCTCTTTTTGACTGCTGACATTGATAAATATACTCAAAAGCCCATGCTAAACAATCCTGAATGGCCCTTCCCTTAATGAATCCATATTGGTTTTCACTAACCACTTTGAGAATGACACCTTGCAATCTGTCAGCCATCAATTTTGTAAGAAACTTAAGACTCAAACCCATTAGGGAAATTGGTCTGAAATCATTAACTGTTTTTGGAGAAGGTTTTTTTGGCACAAGAGTGATGTAAGAATTATTCAGGATCTATAAATATGTAGATTCAGCATGAAAATGTGCCACAAGTCTATAGAAGTCTTGTGCAATGATATGCCAGCATTTTTTCATGAAATAACCATTGAAACCATCTAGGCCAGGTGCCTTATCTACTGGGATCATAGTGATGAGATTACCAATTTCTTGTGTGGAGAACATGTCAATCAAACACTCCAAATCTGTTCTATGAAAAAAGCTCATTCAAATTAAAGTCCATTGTTGGGGAGCAAGAGATACCCATCCTATTCTTGAAACTTTGATAGAACAAATTTGCCTTTTGATCATGCAGGTAAACTATCTGACCACTATGATTCAAAACTTGAGAAATTGTGTTTATTCTGTACCTTTCCTGTGGCAATAGATTGAAAGAACTTGGTGTTTTCTTCTCCCAGCATCATCCATCTATTAGTACAACATTTTTTCCAATATATTTTCCAGAATTCTAGAAGTTTTAAGATACGATGTTTAACTACCTCCTTGAAATTCCATTCAAATAAAGAAAGGTTTCTCTCTTCTACTAGAAGATCAAGAAAATCAATTATTTTATTACAGTTACTCAAGAGGAGCATGATTCTGGACAAATTCTTAGTCCAAAGCTTCAGTTTCTTCCTCATAATTTTCAATTTGAAGGAGATACATTTTGCAGGATCATCAAAACCAGGATCTAACATCCAAACTTGCTGAACCACATCAAAGAAACCCTCTGCTTCAACCCAGAAGTTTTAAAATCTGAAAATTGGAGACTTAGGGATTTTTGTATCAATCTTTACCACACATGGAACATGGTCAGAGATATTCTTGGTCAGAGGGAGAACAGTTGTATTGGGGAAGGTTAAAGTCCAGGATGTAGAGGTGAAAACCCAATCAAGCCTTTCCAGCAAAGGATTTTGTTGCATATTGCTCCAGGTGAACCTTCTCCCTTTTAATGGGATTCCAAGCAATCCTAGAGAACTAATGATCTCATTGAAAATAAAATATCATTCATATCAGCTCCCACTTTATTTCTATCATAAATAGATCTGTAGAAATTAAAGTCCCCTAGGAAAAGCCAGTTCTGTTTAGCATCAATATGGATGTTTTTAAACCAGGTCACAAAATCTGATCTTTGAGGGCCATTACATGGCCCATACACACAAGTCAAGGACCAAACTTGGGAGGTGAATCTAGAAGTTAACTCCACAGTCACAGAGAAAGGGTTAACTTCTTTGGGTGTCCCAGTGAAAACTCTTGATGCCCAAACAATTAGAATACCACCTGATGCACCCATGGAGGGGGCAAAAGCAAAAGAGGCAAAGCGCTTGGGGGCAAATTTCTTGATGTCAGAAAGCTCAAAGTTTTCCATTTTCGTTTCTTGCAGACATAAAACCTGGCAACCACTCCCTTCAATATTCTGCCTTAAAGACAGTAGCTTATTTTCGGCATTCATTCCTCTGATGTTCCAGCACAAGACATTCCAAGATTTAAAATTACTATTCATTATCACACCATTGTGGGAGGGGCAAAAGTACCCAGGCTAGCACAGCTAACCGAAAAACAAACCAAAAGACATTCACACAAGTCTTGGCAGTCTGACAGGACAAATATCTAATAAAACAACTTTGACAGTAAACAAATTACAGACCCTTGGAGCATGATAAATGGAAAACATAGGCCTATCAACAAGACTGAATCTTTCGTCATTATTTATCCTCCATGTTTGGCCTGGGGATCTTCTGTCTTCTTTCACCCCCCAGGCTGGATTCTGCCACCTCTTTAGGAGAGAGCCTGCACATGTCTACCCCCATCTTTTGTATGACCGAAAGTGAACAATTAGAGGGAGAGGAGTCAGAGTTCATATCACTATAAGAAGTTTCATTGAAATCAGACTCCTGCATACTACTATTAATAAAGAGTTTTGCAATACCTGCTAATTCCTTAAGCTTTTTAGCAGACCTGCCCCTTGGCTTCCCAATGCCCATTCTTGGATCCATCTGCAATTCTTTGGTTGCCATGTCCTGCAGAAGTCTAGAGCTTTGTCTTCTGTAAGGACTGTAAAGAATGGTCTTCCCATCTTTTCTTCTTTACCGGTGCCTTGGGGGGAAGCAGGGCAATAGGGGCCACACTGATTGGGCTAGAAGGGGGCCTCACACTGATTGGTAGAACATCCTCAATCACCCTTTCCGGCAGAGGAGGGGAATTAGACTCGAAAGGCAGTAAAGCCCATTCAGGTTCATGTTGGCCCACTGAGGGAGAGGAATCAAAGATGTACTTCCTTGGCAGGACCAATGTCGAGAAAGGATTGGCCATTCTCAAAGCAGCAGGGATAGGCTTGTCCTGGATCAAAGTCTGCATGATGCCCTTTGCTTTACAGAGAAAGTCAATCTTGTCCAATATGCCTTTCATTTGATAAAAGTAGGGGTGCCTTGGAGTTTCATCTCTAGCAATTCTGTTCAGCTGAGCTAAGAATTCCTAGACTTGTGGGTCTAGAATAGGATCCTAGACGGTTGCCTTCCTAGCTGATCAGAGAGGTGTGGCCATCTGTTGAGGCAGAATAAGTTGACCAAGGTTTTCTTCAATTTGCCCCATCAGATGGTCTTGGCCCCAGGCATCCTCTTGCTGTTCATTTGCAGCCTAATGTTGCTGCACTGCCTCATCCCAACCTCTAGCCCCCTGGTTCCTAGGGTTGCCAAACTGCCAAACATTACCATCATTAGGGTCCTCATCAGCTGCATCATCAGGGCCCGGCTGCGGACCGGCAGGGGGGAGATCCTCTTCAGGGGGGAAATTAATAAAATCCCCCTGTAGCATGAAAATCGAGATTGTCCAAGATTCACCCCCACCCCCAGCACCAAGAGGATCAAAGAGAACAATCTTTCTCAGCACAAAATCCTGGTCCCTGTACTTTGCCCTAACAAAAACCCTTCCCAACATTCTGTCTGCATCCGCCCAAAAGGTTAACAGACCAAAAGAGGTAACTGCCAGGTGCACATGATGGCGATCAATGAAATCAAGCGGAAAATCTAGGAACATGAACCAGCCCTCTCTATGGTAGTTAGCCGCCCTCCAATTAGGACCTTGGTCATGATTAACAAAAGTAACAGAGTGAACCCCATCATAGAACTCGGGCGGAGAGAGGACCAGAGCATCCCTATTCATAGCAGACTTCATCTGGAAGAAACCTACTGTAGACGGGTGCTGGAAGCTATTACGAACCTCATAGTGTAGCTCATCTTGTACAAAGTTGGCAATGAGGGCACGATGATGATCCCAGTCCTGCTCCAAGGGGATTGGCTCTACAATGGCCACATAGAAGTCTTCATGGCGCCGAGCATGGTGCTGCAGGATAGTGAGGTCGACCCGCGGGATACGGAAGTCACCCCCAACATTCACAGCGTGACCCTGCCTTAGGAAGCGCTGCGGATTATGGTTAAGATTGGCCAT

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CDS seq

ATGGCCAATCTTAACCATAATCCGCAGCGCTTCCTAAGGCAGGGTCACGCTGTGAATGTTGGGGGTGACTTCCGTATCCCGCGGGTCGACCTCACTATCCTGCAGCACCATGCTCGGCGCCATGAAGACTTCTATGTGGCCATTGTAGAGCCAATCCCCTTGGAGCAGGACTGGGATCATCATCGTGCCCTCATTGCCAACTTTGTACAAGATGAGCTACACTATGAGGTTCGTAATAGCTTCCAGCACCCGTCTACAGTAGGTTTCTTCCAGATGAAGTCTGCTATGAATAGGGATGCTCTGGTCCTCTCTCCGCCCGAGTTCTATGATGGGGTTCACTCTGTTACTTTTGTTAATCATGACCAAGGTCCTAATTGGAGGGCGGCTAACTACCATAGAGAGGGCTGGTTCATGTTCCTAGATTTTCCGCTTGATTTCATTGATCGCCATCATGTGCACCTGGCAGTTACCTCTTTTGGTCTGTTAACCTTTTGGGCGGATGCAGACAGAATGTTGGGAAGGGTTTTTGTTAGGGCAAAGTACAGGGACCAGGATTTTGTGCTGAGAAAGATTGTTCTCTTTGATCCTCTTGGTGCTGGGGGTGGGGGTGAATCTTGGACAATCTCGATTTTCATGCTACAGGGGGATTTTATTAATTTCCCCCCTGAAGAGGATCTCCCCCCTGCCGGTCCGCAGCCGGGCCCTGATGATGCAGCTGATGAGGACCCTAATGATGGTAATGTTTGGCAGTTTGGCAACCCTAGGAACCAGGGGGCTAGAGGCATATTGGACAAGATTGACTTTCTCTGTAAAGCAAAGGGCATCATGCAGACTTTGATCCAGGACAAGCCTATCCCTGCTGCTTTGAGAATGGCCAATCCTTTCTCGACATTGGTCCTGCCAAGGAAGTACATCTTTGATTCCTCTCCCTCAGTGGGCCAACATGAACCTGAATGGGCTTTACTGCCTTTCGAGTCTAATTCCCCTCCTCTGCCGGAAAGGGTGATTGAGGATGTTCTACCAATCAGTGTGAGGCCCCCTTCTAGCCCAATCAGTGTGGCCCCTATTGCCCTGCTTCCCCCCAAGGCACCGGACATGGCAACCAAAGAATTGCAGATGGATCCAAGAATGGGCATTGGGAAGCCAAGGGGCAGGTCTGCTAAAAAGCTTAAGGAATTAGCAGTAGAAGAGAGAAACCTTTCTTTATTTGAATGGAATTTCAAGGAGGTAGTTAAACATCGTATCTTAAAACTTCTAGAATTCTGGAAAATATATTGGAAAAAATGTTGTACTAATAGATGGATGATGCTGGGAGAAGAAAACACCAAGTTCTTTCAATCTATTGCCACAGGAAAGATCCTGAATAATTCTTACATCACTCTTGTGCCAAAAAAACCTTCTCCAAAAACAGTTAATGATTTCAGACCAATTTCCCTAATGGGTTTGAGTCTTAAGTTTCTTACAAAATTGATGGCTGACAGATTGCAAGGTGTCATTCTCAAAGTGGTTAGTGAAAACCAATATGGATTCATTAAGGGAAGGGCCATTCAGGATTGTTTAGCATGGGCTTTTGAGTATATTTATCAATGTCAGCAGTCAAAAAGAGAAATAATCATCCTCAAGACAATTGAAAAAGCTTTTGATACAATTGAACACACGGCCATCTTATCTGTAATGCAAAGCATGGGGTTCCCACAAAAATGGCTTAATTGGATGCAAATGGTATTCTCCTCGACAAGCTCTGTAGTTCTGTTGAATGGGGTTCCTGGTATCTCTTTTAATTACAAGAGAGGAGTTAGGCAGGGAGATCATTTGTCTCCACTTCTTTTTGTTCTAGGGGCTAAACTCTTACAAAGAATAGTAAACATGGCTTTTAATCTTGATTTAATTTCAAAGCCAGTCAATGAAAATGATGGAAGTGGGTTCCCCAACATCCAATTTGCTGATGACACTTTGATCCTGTTAAAAGCTTCAAAAAAAGAAATCTTCTGCTTCAAGGCACTACTGAACATATTTGCTCAATCGATTGGCCTAAAAGTTAATTATGCAAAATCCAGTCTTTATCCCCTCAATCTCTCTGAAGAAAAGCCAGATCTAATTGCAGGATTTCTGGGATGTTCTGTTGGAAAACTGCCTTTCACATATGTGGGACTCCCTGGGAACTACAGGGCAAAGAGTGATTGA

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Protein seq

MANLNHNPQRFLRQGHAVNVGGDFRIPRVDLTILQHHARRHEDFYVAIVEPIPLEQDWDHHRALIANFVQDELHYEVRNSFQHPSTVGFFQMKSAMNRDALVLSPPEFYDGVHSVTFVNHDQGPNWRAANYHREGWFMFLDFPLDFIDRHHVHLAVTSFGLLTFWADADRMLGRVFVRAKYRDQDFVLRKIVLFDPLGAGGGGESWTISIFMLQGDFINFPPEEDLPPAGPQPGPDDAADEDPNDGNVWQFGNPRNQGARGILDKIDFLCKAKGIMQTLIQDKPIPAALRMANPFSTLVLPRKYIFDSSPSVGQHEPEWALLPFESNSPPLPERVIEDVLPISVRPPSSPISVAPIALLPPKAPDMATKELQMDPRMGIGKPRGRSAKKLKELAVEERNLSLFEWNFKEVVKHRILKLLEFWKIYWKKCCTNRWMMLGEENTKFFQSIATGKILNNSYITLVPKKPSPKTVNDFRPISLMGLSLKFLTKLMADRLQGVILKVVSENQYGFIKGRAIQDCLAWAFEYIYQCQQSKREIIILKTIEKAFDTIEHTAILSVMQSMGFPQKWLNWMQMVFSSTSSVVLLNGVPGISFNYKRGVRQGDHLSPLLFVLGAKLLQRIVNMAFNLDLISKPVNENDGSGFPNIQFADDTLILLKASKKEIFCFKALLNIFAQSIGLKVNYAKSSLYPLNLSEEKPDLIAGFLGCSVGKLPFTYVGLPGNYRAKSD

Function LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os06g25900 LOC_Os06g25900.1 Chr06 15148051 15152307 - MSU_osa1r7
CDS seq

ATGGCCAATCTTAACCATAATCCGCAGCGCTTCCTAAGGCAGGGTCACGCTGTGAATGTTGGGGGTGACTTCCGTATCCCGCGGGTCGACCTCACTATCCTGCAGCACCATGCTCGGCGCCATGAAGACTTCTATGTGGCCATTGTAGAGCCAATCCCCTTGGAGCAGGACTGGGATCATCATCGTGCCCTCATTGCCAACTTTGTACAAGATGAGCTACACTATGAGGTTCGTAATAGCTTCCAGCACCCGTCTACAGTAGGTTTCTTCCAGATGAAGTCTGCTATGAATAGGGATGCTCTGGTCCTCTCTCCGCCCGAGTTCTATGATGGGGTTCACTCTGTTACTTTTGTTAATCATGACCAAGGTCCTAATTGGAGGGCGGCTAACTACCATAGAGAGGGCTGGTTCATGTTCCTAGATTTTCCGCTTGATTTCATTGATCGCCATCATGTGCACCTGGCAGTTACCTCTTTTGGTCTGTTAACCTTTTGGGCGGATGCAGACAGAATGTTGGGAAGGGTTTTTGTTAGGGCAAAGTACAGGGACCAGGATTTTGTGCTGAGAAAGATTGTTCTCTTTGATCCTCTTGGTGCTGGGGGTGGGGGTGAATCTTGGACAATCTCGATTTTCATGCTACAGGGGGATTTTATTAATTTCCCCCCTGAAGAGGATCTCCCCCCTGCCGGTCCGCAGCCGGGCCCTGATGATGCAGCTGATGAGGACCCTAATGATGGTAATGTTTGGCAGTTTGGCAACCCTAGGAACCAGGGGGCTAGAGGCATATTGGACAAGATTGACTTTCTCTGTAAAGCAAAGGGCATCATGCAGACTTTGATCCAGGACAAGCCTATCCCTGCTGCTTTGAGAATGGCCAATCCTTTCTCGACATTGGTCCTGCCAAGGAAGTACATCTTTGATTCCTCTCCCTCAGTGGGCCAACATGAACCTGAATGGGCTTTACTGCCTTTCGAGTCTAATTCCCCTCCTCTGCCGGAAAGGGTGATTGAGGATGTTCTACCAATCAGTGTGAGGCCCCCTTCTAGCCCAATCAGTGTGGCCCCTATTGCCCTGCTTCCCCCCAAGGCACCGGACATGGCAACCAAAGAATTGCAGATGGATCCAAGAATGGGCATTGGGAAGCCAAGGGGCAGGTCTGCTAAAAAGCTTAAGGAATTAGCAGTAGAAGAGAGAAACCTTTCTTTATTTGAATGGAATTTCAAGGAGGTAGTTAAACATCGTATCTTAAAACTTCTAGAATTCTGGAAAATATATTGGAAAAAATGTTGTACTAATAGATGGATGATGCTGGGAGAAGAAAACACCAAGTTCTTTCAATCTATTGCCACAGGAAAGATCCTGAATAATTCTTACATCACTCTTGTGCCAAAAAAACCTTCTCCAAAAACAGTTAATGATTTCAGACCAATTTCCCTAATGGGTTTGAGTCTTAAGTTTCTTACAAAATTGATGGCTGACAGATTGCAAGGTGTCATTCTCAAAGTGGTTAGTGAAAACCAATATGGATTCATTAAGGGAAGGGCCATTCAGGATTGTTTAGCATGGGCTTTTGAGTATATTTATCAATGTCAGCAGTCAAAAAGAGAAATAATCATCCTCAAGACAATTGAAAAAGCTTTTGATACAATTGAACACACGGCCATCTTATCTGTAATGCAAAGCATGGGGTTCCCACAAAAATGGCTTAATTGGATGCAAATGGTATTCTCCTCGACAAGCTCTGTAGTTCTGTTGAATGGGGTTCCTGGTATCTCTTTTAATTACAAGAGAGGAGTTAGGCAGGGAGATCATTTGTCTCCACTTCTTTTTGTTCTAGGGGCTAAACTCTTACAAAGAATAGTAAACATGGCTTTTAATCTTGATTTAATTTCAAAGCCAGTCAATGAAAATGATGGAAGTGGGTTCCCCAACATCCAATTTGCTGATGACACTTTGATCCTGTTAAAAGCTTCAAAAAAAGAAATCTTCTGCTTCAAGGCACTACTGAACATATTTGCTCAATCGATTGGCCTAAAAGTTAATTATGCAAAATCCAGTCTTTATCCCCTCAATCTCTCTGAAGAAAAGCCAGATCTAATTGCAGGATTTCTGGGATGTTCTGTTGGAAAACTGCCTTTCACATATGTGGGACTCCCTGGGAACTACAGGGCAAAGAGTGATTGA

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Protein seq

MANLNHNPQRFLRQGHAVNVGGDFRIPRVDLTILQHHARRHEDFYVAIVEPIPLEQDWDHHRALIANFVQDELHYEVRNSFQHPSTVGFFQMKSAMNRDALVLSPPEFYDGVHSVTFVNHDQGPNWRAANYHREGWFMFLDFPLDFIDRHHVHLAVTSFGLLTFWADADRMLGRVFVRAKYRDQDFVLRKIVLFDPLGAGGGGESWTISIFMLQGDFINFPPEEDLPPAGPQPGPDDAADEDPNDGNVWQFGNPRNQGARGILDKIDFLCKAKGIMQTLIQDKPIPAALRMANPFSTLVLPRKYIFDSSPSVGQHEPEWALLPFESNSPPLPERVIEDVLPISVRPPSSPISVAPIALLPPKAPDMATKELQMDPRMGIGKPRGRSAKKLKELAVEERNLSLFEWNFKEVVKHRILKLLEFWKIYWKKCCTNRWMMLGEENTKFFQSIATGKILNNSYITLVPKKPSPKTVNDFRPISLMGLSLKFLTKLMADRLQGVILKVVSENQYGFIKGRAIQDCLAWAFEYIYQCQQSKREIIILKTIEKAFDTIEHTAILSVMQSMGFPQKWLNWMQMVFSSTSSVVLLNGVPGISFNYKRGVRQGDHLSPLLFVLGAKLLQRIVNMAFNLDLISKPVNENDGSGFPNIQFADDTLILLKASKKEIFCFKALLNIFAQSIGLKVNYAKSSLYPLNLSEEKPDLIAGFLGCSVGKLPFTYVGLPGNYRAKSD

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0015620 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0015400 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0015590 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0015570 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0015720 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0260800 SBH 0.0025975 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0015200 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0034220 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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