Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os06g20190		OGI:06032550 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr06:11581191-11584432		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		-
DNA seq		ATGACGGCGGCGGCAGCGGCTCCCCTCCCCTCCCCTCTCAGATCCGGCCGGGGGAGGGGGGCGGCGGCGAGGCGCGTGGCGGCGGCGGTGCGGCGATTTTTTTTTTCGTTTTTTTGCATTTTCGCAGGCGGGCCGTTGCCCCGACTACGAAAATCATCGATTTTCACAGTCGTTGTGTTGCAGGCGGACCTCCCTCCCGTATGTAAAAATTAGTTTTGGCCGCTTAGGAAAATTGGTTTTCTAGCAGTGACGTACACATTACCAAGGACGGCTGGTACAATAACGTGTACGTACATAGATTTGTCCATGTAGAACAAGGCAATTTTGTCTAGCTTTCTCCGCGGATTCTTCGTTGGCCGTCGATACCTCCAAGCTAGAACATTCACCGCATTGCACGATAAATAGTGAAACCTGACCATGATTATATTATGTGATTCATCAACGGATCGACCAAAGCAAAACAGTTAATACCATGGCTTATTACCATCTTCTATTGTGCATCCTCTTGTGCAGCAGCTACTATTCGATCGTTCTTGCAGTAAATCTGAACAACTTTGCAGTCGTGCCAGCTCGTTCGTTCGAACCAGAAGCAGCGTGCTCTACATCAAGTGGTATACATCTTTCTAGCTCAATTTTAGGGTTTATACTAAAATTAACCCACGCCAAAATTTGGAATTACCAAGCTTTGCCAAATTTTGGTAGGTAAAATTAAGTGCGTGGGTATTGTTTGGTTTGCTACAATGCTAAATATTCTTTTTTATAGTGTAATGTGGAGAAGTCTGTAGAAAGGACGTAACTACCCAGCTAATGGTAGCTGGTTTGTCTACTCCATCTATAAGAGGCACCATCCACCTATACTTTAAATATAATTTTCTCTTAAACTACACATCCGATCTACGATCCGATTGCATTGTTGTGTTCGTAACAATTAAATATTTACAACAAGATTTCACATGATTATATTTTGATGAAAAATCAAAAATTACTTTTATGATATGTCTAAATTACTTTTAGATTTCACTAAGTTACTTCTTAGATATATAAAAGTAAATTCAGTAAAACCTAAAAGTAATTTACATATATCATAGAAGTAACTTAGAACAAAACGAAGGTAACTTTGGCATGTCATTTGAAGTAAATCCGTTGTAGAGATAAAAACATGCTCTATATAGAAATTAAATTAATCAGCACAAATTATGGAATTAACTAAATAAATAATAAAAGTAATCACCTCAGAGCAATATGAATGTATAGGAAGTATTTTAATCAAATCTAAAAGTAACTTATATATATATGATAATTTATTCAATGAAAAAAGGCATTAATTAAAGTTACTTTCTTTTTGTTATAAGTTACTTCTATAATATTGTAAATTACTTTTAGGCTTTACTGAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATCTTGTTGTAAAAATTTAATTATTACGAACACAACGGTGTAATCGGATTGTAAATCGGATGAGTAATTTAAGAGATAATTTTATATGAAGCATAGATGATAGGAATATTTCCCCTACTTACTCAATGGATTAAGTCCTAGCACGTGGGTGTCTCTGGTTAAAACTAATTGGAGAGGCCTATCCAATTAGATTTACCGTTGTAGAAAATCATTTCAAAATCCTCAGAATTTTGGCATGATAAGATATGGTAGAGTATTTGGGATGTGTTTAAATTGCTTCAATCTTACCATAATTTGATAATGCTAAAGTTTGATATGATTGGAAATGGTAGCAAACTGAACAGCCCTTTAATCTCTTCTGAACTTACTAAATTTGAAACTACGTGCTACTCAGTGCAGCAATTTTTTGCAGCTCAATTAATTTGGAACTAACATACTAATTTGCAGCGAGTTCCGACCCGAACCGCGCTTCCGTGCCTTTGGTGCACCGGCACGGGCCGTGCGCGCCATCGGCGGCGAGCGGCGGCAAGCCATCTCTCGCCGAGAGGCTCCGCCGCGACCGCGCCCGCACGAACTACATCGTCACCAAGGCCACCGGCGGCCGCACGGCGGCCACCGCGCTGTCGGACGCCGCCGGCGGTGGCACGAGCATCCCGACGTTCCTGGGCGACTCCGTCAACTCGCTGGAGTACGTCGTCACGCTCGGCATCGGCACGCCGGCCGTCCAGCAGACCGTCCTCATCGACACCGGCAGCGACCTGTCGTGGGTGCAGTGCAAGCCGTGCGGCGCCGGCGAGTGCTACGCCCAGAAGGACCCGCTGTTCGACCCGAGCTCGTCGTCGTCGTACGCCTCGGTCCCGTGCGACTCCGACGCGTGCAGGAAGCTCGCGGCCGGCGCGTACGGCCATGGCTGCACGGGCGTCTCCGGCGGCGCCGCCGCGCTGTGCGAGTACGGGATCGAGTACGGCAACCGCGCCACCACCACCGGGGTGTACAGCACGGAGACGCTGACGCTCAAGCCCGGCGTCGTCGTCGCCGACTTCGGCTTCGGCTGCGGCGACCACCAGCACGGCCCCTACGAGAAGTTCGACGGCCTCCTCGGGCTCGGCGGCGCGCCGGAGTCGCTCGTGTCGCAGACGTCGTCCCAGTTCGGCGGGCCCTTCTCGTACTGCCTCCCGCCGACGAGCGGCGGCGCCGGGTTCCTCACTCTCGGCGCGCCGCCCAACAGCAGCAGCAGCACGGCGGCCAGCGGCTTATCGTTCACGCCGATGCGCCGCCTCCCCTCGGTGCCGACGTTCTACATCGTGACGCTCACCGGCATCAGCGTCGGCGGTGCGCCGCTCGCCATCCCGCCGTCGGCGTTCTCGAGCGGCATGGTCATCGACTCCGGCACGGTCATCACGGGGCTCCCGGCGACGGCCTACGCGGCGCTCCGGTCAGCGTTCCGGAGCGCCATGTCCGAGTACCGGCTCCTGCCGCCGTCGAACGGCGGCGTGCTCGACACGTGCTACGACTTCACCGGACACGCCAACGTCACCGTGCCGACGATCTCCCTGACGTTCAGTGGCGGCGCCACGATCGACCTCGCTGCGCCGGCGGGTGTTCTGGTCGACGGCTGCCTTGCCTTCGCCGGAGCAGGGACGGACAACGCCATTGGAATCATTGGCAACGTGAACCAACGCACGTTCGAGGTTCTGTACGATTCTGGCAAGGGAACCGTCGGATTTAGGGCCGGTGCTTGCTGA More
CDS seq		ATGACGGCGGCGGCAGCGGCTCCCCTCCCCTCCCCTCTCAGATCCGGCCGGGGGAGGGGGGCGGCGGCGAGGCGCGTGGCGGCGGCGGCGGGCCGTTGCCCCGACTACGAAAATCATCGATTTTCACAGTCGTTGTGTTGCAGGCGGACCTCCCTCCCCAGCTACTATTCGATCGTTCTTGCAGTAAATCTGAACAACTTTGCAGTCGTGCCAGCTCGTTCGTTCGAACCAGAAGCAGCGTGCTCTACATCAAGTGCGAGTTCCGACCCGAACCGCGCTTCCGTGCCTTTGGTGCACCGGCACGGGCCGTGCGCGCCATCGGCGGCGAGCGGCGGCAAGCCATCTCTCGCCGAGAGGCTCCGCCGCGACCGCGCCCGCACGAACTACATCGTCACCAAGGCCACCGGCGGCCGCACGGCGGCCACCGCGCTGTCGGACGCCGCCGGCGGTGGCACGAGCATCCCGACGTTCCTGGGCGACTCCGTCAACTCGCTGGAGTACGTCGTCACGCTCGGCATCGGCACGCCGGCCGTCCAGCAGACCGTCCTCATCGACACCGGCAGCGACCTGTCGTGGGTGCAGTGCAAGCCGTGCGGCGCCGGCGAGTGCTACGCCCAGAAGGACCCGCTGTTCGACCCGAGCTCGTCGTCGTCGTACGCCTCGGTCCCGTGCGACTCCGACGCGTGCAGGAAGCTCGCGGCCGGCGCGTACGGCCATGGCTGCACGGGCGTCTCCGGCGGCGCCGCCGCGCTGTGCGAGTACGGGATCGAGTACGGCAACCGCGCCACCACCACCGGGGTGTACAGCACGGAGACGCTGACGCTCAAGCCCGGCGTCGTCGTCGCCGACTTCGGCTTCGGCTGCGGCGACCACCAGCACGGCCCCTACGAGAAGTTCGACGGCCTCCTCGGGCTCGGCGGCGCGCCGGAGTCGCTCGTGTCGCAGACGTCGTCCCAGTTCGGCGGGCCCTTCTCGTACTGCCTCCCGCCGACGAGCGGCGGCGCCGGGTTCCTCACTCTCGGCGCGCCGCCCAACAGCAGCAGCAGCACGGCGGCCAGCGGCTTATCGTTCACGCCGATGCGCCGCCTCCCCTCGGTGCCGACGTTCTACATCGTGACGCTCACCGGCATCAGCGTCGGCGGTGCGCCGCTCGCCATCCCGCCGTCGGCGTTCTCGAGCGGCATGGTCATCGACTCCGGCACGGTCATCACGGGGCTCCCGGCGACGGCCTACGCGGCGCTCCGGTCAGCGTTCCGGAGCGCCATGTCCGAGTACCGGCTCCTGCCGCCGTCGAACGGCGGCGTGCTCGACACGTGCTACGACTTCACCGGACACGCCAACGTCACCGTGCCGACGATCTCCCTGACGTTCAGTGGCGGCGCCACGATCGACCTCGCTGCGCCGGCGGGTGTTCTGGTCGACGGCTGCCTTGCCTTCGCCGGAGCAGGGACGGACAACGCCATTGGAATCATTGGCAACGTGAACCAACGCACGTTCGAGGTTCTGTACGATTCTGGCAAGGGAACCGTCGGATTTAGGGCCGGTGCTTGCTGA More
Protein seq		MTAAAAAPLPSPLRSGRGRGAAARRVAAAAGRCPDYENHRFSQSLCCRRTSLPSYYSIVLAVNLNNFAVVPARSFEPEAACSTSSASSDPNRASVPLVHRHGPCAPSAASGGKPSLAERLRRDRARTNYIVTKATGGRTAATALSDAAGGGTSIPTFLGDSVNSLEYVVTLGIGTPAVQQTVLIDTGSDLSWVQCKPCGAGECYAQKDPLFDPSSSSSYASVPCDSDACRKLAAGAYGHGCTGVSGGAAALCEYGIEYGNRATTTGVYSTETLTLKPGVVVADFGFGCGDHQHGPYEKFDGLLGLGGAPESLVSQTSSQFGGPFSYCLPPTSGGAGFLTLGAPPNSSSSTAASGLSFTPMRRLPSVPTFYIVTLTGISVGGAPLAIPPSAFSSGMVIDSGTVITGLPATAYAALRSAFRSAMSEYRLLPPSNGGVLDTCYDFTGHANVTVPTISLTFSGGATIDLAAPAGVLVDGCLAFAGAGTDNAIGIIGNVNQRTFEVLYDSGKGTVGFRAGAC
Function		Aspartyl protease family protein At5g10770 [UniProtKB/Swiss-Prot:Q8S9J6]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os06g20190	LOC_Os06g20190.1	Chr06	11581191	11584432	+	MSU_osa1r7
CDS seq	ATGACGGCGGCGGCAGCGGCTCCCCTCCCCTCCCCTCTCAGATCCGGCCGGGGGAGGGGGGCGGCGGCGAGGCGCGTGGCGGCGGCGGCGGGCCGTTGCCCCGACTACGAAAATCATCGATTTTCACAGTCGTTGTGTTGCAGGCGGACCTCCCTCCCCAGCTACTATTCGATCGTTCTTGCAGTAAATCTGAACAACTTTGCAGTCGTGCCAGCTCGTTCGTTCGAACCAGAAGCAGCGTGCTCTACATCAAGTGCGAGTTCCGACCCGAACCGCGCTTCCGTGCCTTTGGTGCACCGGCACGGGCCGTGCGCGCCATCGGCGGCGAGCGGCGGCAAGCCATCTCTCGCCGAGAGGCTCCGCCGCGACCGCGCCCGCACGAACTACATCGTCACCAAGGCCACCGGCGGCCGCACGGCGGCCACCGCGCTGTCGGACGCCGCCGGCGGTGGCACGAGCATCCCGACGTTCCTGGGCGACTCCGTCAACTCGCTGGAGTACGTCGTCACGCTCGGCATCGGCACGCCGGCCGTCCAGCAGACCGTCCTCATCGACACCGGCAGCGACCTGTCGTGGGTGCAGTGCAAGCCGTGCGGCGCCGGCGAGTGCTACGCCCAGAAGGACCCGCTGTTCGACCCGAGCTCGTCGTCGTCGTACGCCTCGGTCCCGTGCGACTCCGACGCGTGCAGGAAGCTCGCGGCCGGCGCGTACGGCCATGGCTGCACGGGCGTCTCCGGCGGCGCCGCCGCGCTGTGCGAGTACGGGATCGAGTACGGCAACCGCGCCACCACCACCGGGGTGTACAGCACGGAGACGCTGACGCTCAAGCCCGGCGTCGTCGTCGCCGACTTCGGCTTCGGCTGCGGCGACCACCAGCACGGCCCCTACGAGAAGTTCGACGGCCTCCTCGGGCTCGGCGGCGCGCCGGAGTCGCTCGTGTCGCAGACGTCGTCCCAGTTCGGCGGGCCCTTCTCGTACTGCCTCCCGCCGACGAGCGGCGGCGCCGGGTTCCTCACTCTCGGCGCGCCGCCCAACAGCAGCAGCAGCACGGCGGCCAGCGGCTTATCGTTCACGCCGATGCGCCGCCTCCCCTCGGTGCCGACGTTCTACATCGTGACGCTCACCGGCATCAGCGTCGGCGGTGCGCCGCTCGCCATCCCGCCGTCGGCGTTCTCGAGCGGCATGGTCATCGACTCCGGCACGGTCATCACGGGGCTCCCGGCGACGGCCTACGCGGCGCTCCGGTCAGCGTTCCGGAGCGCCATGTCCGAGTACCGGCTCCTGCCGCCGTCGAACGGCGGCGTGCTCGACACGTGCTACGACTTCACCGGACACGCCAACGTCACCGTGCCGACGATCTCCCTGACGTTCAGTGGCGGCGCCACGATCGACCTCGCTGCGCCGGCGGGTGTTCTGGTCGACGGCTGCCTTGCCTTCGCCGGAGCAGGGACGGACAACGCCATTGGAATCATTGGCAACGTGAACCAACGCACGTTCGAGGTTCTGTACGATTCTGGCAAGGGAACCGTCGGATTTAGGGCCGGTGCTTGCTGA More
Protein seq	MTAAAAAPLPSPLRSGRGRGAAARRVAAAAGRCPDYENHRFSQSLCCRRTSLPSYYSIVLAVNLNNFAVVPARSFEPEAACSTSSASSDPNRASVPLVHRHGPCAPSAASGGKPSLAERLRRDRARTNYIVTKATGGRTAATALSDAAGGGTSIPTFLGDSVNSLEYVVTLGIGTPAVQQTVLIDTGSDLSWVQCKPCGAGECYAQKDPLFDPSSSSSYASVPCDSDACRKLAAGAYGHGCTGVSGGAAALCEYGIEYGNRATTTGVYSTETLTLKPGVVVADFGFGCGDHQHGPYEKFDGLLGLGGAPESLVSQTSSQFGGPFSYCLPPTSGGAGFLTLGAPPNSSSSTAASGLSFTPMRRLPSVPTFYIVTLTGISVGGAPLAIPPSAFSSGMVIDSGTVITGLPATAYAALRSAFRSAMSEYRLLPPSNGGVLDTCYDFTGHANVTVPTISLTFSGGATIDLAAPAGVLVDGCLAFAGAGTDNAIGIIGNVNQRTFEVLYDSGKGTVGFRAGAC More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_06g0306500	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g48860	RBH	0.209503	0.255407	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0306500	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0012720	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_06g0012540	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_06g0012620	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_06g0012670	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_06g0012800	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_06G0188600	SBH	0.008223	0.0050785	0.1275815
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_06g0012260	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_06G0185000	SBH	0	0	0.133734
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_06g0012800	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_06g0012670	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_06g0012460	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_06g0012950	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_06g0012550	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_06G012410	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_06g0012740	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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