Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g16640 | OGI:06027580 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:9564124-9566967 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCTAGTAAACTGTAACAATACATTTATTTGCTAGCTTGGTTCAAACCTCTTACATATACATGCAAATGTATACATACACGTACGTACTAGCAACCAGAGCATGAAATGAGACATGTACTATTAGCTAGTATAGACCCTAGCTAATAATACTTTATTATTGGGCGCATGTAGTACTAGATGTAAATTATTAAGGAGATGTAGGTAGTTTGATGGCGAGCACGATCGATCTCTCTACATCACTTCAATTTGAGAGTTTTGAGGGCACCCAGGCCCGCCATAGTAGATGTAAGTGCCCCAACTGGTGGTACTGGAGGAACCAGTCATGACGTTATAGCAACTGGGCAACGGAGCTATCAAGCCCACACCATTTGGTGGTTTGAGATTGTTGGAGGAATCAACAACTTGGATTGCTCTGCTGTAGGTGGCCTTGCCGAACCCTTCCTCAGGAAAATGTCCACTACCCATGGGTGTGGTAATTTGAGGCGAATTCACCTCCCCACCCCATTCCACACTGTCGGCAACGCCTGTCTGCAGGAGGGTGAAGATGGATGATGGCCAGTAGCCCACATTATTGCCTTGCACTTGCAACCACCAATTGCCCCCCGCTGGGTCCTGCAAATTTATGTATTCATTCGTCATTTACTGGAGGAAGGACAAGATCAATCAGTAGCTAGATGACACAGATTCTCCATGCCCATTCTTGAAGAATTTGATTTTGTATATATGCTTTATTTGAATGTTAAAGGGCTTAATTTTTGTGTACGGTTTACCTTCCAAACTAAATAATCGTACTCATATTGTGTGTCACCATAGGTGGAGACAGGGGATATGCTGCCACCGATGACGAACTGCGGGTTTGTCTGGATGAATCCTGAGCATGCTAGGTTGTAACATCCCGTTTCGTTATATGCATCACGCTACAATATATATTTCATTAGTACCTTTACGCCATCAATTAATTCCCCACCATAATATAACAGGGGCGAAATATTAATTGTTACTAATAATAAAGGAATATATATATCTTACAGTCCAGTAGATGAAGAGTCTAGTTTTGTCATCCCCGTACATAGCTGGGTACACCTGAAACATTGATATGGATAGCTTAGAGCCATCATCGTAAGAGAATATATGCACAAATATTGCAATATTAATGCTTAGTACTCGTACAACAGACGGTGATATTATTAGTAGATAGATATATCCATAAGGCTGGCCACTTATCGAGATTATGTAGTTACATTAATTGTGGCATCCTTATATATATGAAAATTAAACATGGAATCCGTATAAAGTTATCTTCAATGCTAGTTGTAGATAACATGGACATCAGGGCATGCACAAAGATAAGAGCTTGTATGAATGGATTATGCATGGAAATTGCAAGACATGCAGGTAGGACTTAATAGAACTTACTTTTTCCCCTCTGACGCACTTAGAGCGAGTACAATATATAAGTGACATAAGCTGGCTTAAAAAATTACCACATCATACTTATACTTATACTTATGTGAAGGAGAGATAAGAGGAGAGAAAGAAGAAAAGCGAGCTACAGAGTTACACTCAGCTATAGCACTAACTTCAAGTTAGACATTACATGTGTATAGGAGGTGGTCCATATATTAATGATGTAGTGTATGTTTATGCGTAACTATTATACTAATTGGCTCTATGTTAGCTTTTGATGACATAGAATGATTTTGAAGGTAACTAGCTCTTATAAAGATCTTGCTCTTAAGGTGTCACGTACCTGCCATCCTGTTTCAATGGTATTAAGGTCCTTGTTATCATAGGAGCCCGCTGAGATCCATAGTTGGGACAGGCTGAAATCACCAGATGTTGCAATCGTTGGTTGCCACACATTGATGGTCACTTTGGTTCCGTAGTAGTTGGCATCTCCGGTTGCATATGCTACACCATACTGTTCAATGGGAGATTAAATAAGAAAATGTATTTTGAAAAGTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCCAAGATCAAGGAAGACAAGCTAGTTGTAATATGAGTTGAGGGTGGTACTATACGTAGTGGCCGCTTGTGACACCAGCCAAGTGAGAGTGAGGGTGAGAGCTCATGTCGTGCGTCTTCTTGCCAAACGTTGTAAGAGAGGTGGCCCTCATGACATCCTCCTCCTTGGTCCTTCGGATTGGTATAGTGTTGTCAGGGCACTTTTCGCCGTTCTGATTCCATGTTTGGGTGAATGGACGTGTTGCTTCTCCATATAGGCCACTTGGCTGGCTGGAAGGCTGCATCTGAAACCGGCAGGCATATTACTCGTACGTGAAGATATCATGCATCTAATATATTGACGTACAATTATTTTGTCGTTCGTGAAAACAAGAAGATATCATGCGTATATTATATTATATTGGTGGTGTAGAGTGGAATTAATTATATATGAAGTTAATTCACCTGGATTGTATGGTCCTTGAGGAGAGGATGATCGAATGCAGGCTGTCTGGAGATGTGCACACAGTCTATGATATCTCCATCTGGGCTCTGCATGCACGCAGTTAATTTATGATCATATATATATATATATATATATATATATATATATATGTATGTATGTAGTAATAATTAGCTAATTTGCATGCAACTATATAACCTATATAGGTACCTGAATGGTTGCGAGAGGAGGCTTGTTGAGGCGCTTGAGGACCTGCCGCCGCCTCAAATAAGTAGAAGTAGCATCCGATGGCGACAATAAGCTTGGGAAGATCATAGCCAGCAGGAGGAGCGCCACCAAGCCTCGCCTACTCCACGTCCTCGCTGCTGCCATTGCTGATGCTTAATTAGCTGCAG
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| CDS seq | ATGGCAGCAGCGAGGACGTGGAGTAGGCGAGGCTTGGTGGCGCTCCTCCTGCTGGCTATGATCTTCCCAAGCTTATTGTCGCCATCGGATGCTACTTCTACTTATTTGAGGCGGCGGCAGGTCCTCAAGCGCCTCAACAAGCCTCCTCTCGCAACCATTCAGAGCCCAGATGGAGATATCATAGACTGTGTGCACATCTCCAGACAGCCTGCATTCGATCATCCTCTCCTCAAGGACCATACAATCCAGATGCAGCCTTCCAGCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCATTCACCCAAACATGGAATCAGAACGGCGAAAAGTGCCCTGACAACACTATACCAATCCGAAGGACCAAGGAGGAGGATGTCATGAGGGCCACCTCTCTTACAACGTTTGGCAAGAAGACGCACGACATGAGCTCTCACCCTCACTCTCACTTGGCTGGTGTCACAAGCGGCCACTACTATGGTGTAGCATATGCAACCGGAGATGCCAACTACTACGGAACCAAAGTGACCATCAATGTGTGGCAACCAACGATTGCAACATCTGGTGATTTCAGCCTGTCCCAACTATGGATCTCAGCGGGCTCCTATGATAACAAGGACCTTAATACCATTGAAACAGGATGGCAGGTGTACCCAGCTATGTACGGGGATGACAAAACTAGACTCTTCATCTACTGGACTCGTGATGCATATAACGAAACGGGATGTTACAACCTAGCATGCTCAGGATTCATCCAGACAAACCCGCAGTTCGTCATCGGTGGCAGCATATCCCCTGTCTCCACCTATGGTGACACACAATATGAGTACGATTATTTAGTTTGGAAGGACCCAGCGGGGGGCAATTGGTGGTTGCAAGTGCAAGGCAATAATGTGGGCTACTGGCCATCATCCATCTTCACCCTCCTGCAGACAGGCGTTGCCGACAGTGTGGAATGGGGTGGGGAGGTGAATTCGCCTCAAATTACCACACCCATGGGTAGTGGACATTTTCCTGAGGAAGGGTTCGGCAAGGCCACCTACAGCAGAGCAATCCAAGTTGTTGATTCCTCCAACAATCTCAAACCACCAAATGGTGTGGGCTTGATAGCTCCGTTGCCCAGTTGCTATAACGTCATGACTGGTTCCTCCAGTACCACCAGTTGGGGCACTTACATCTACTATGGCGGGCCTGGGTGCCCTCAAAACTCTCAAATTGAAGTGATGTAG
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| Protein seq | MAAARTWSRRGLVALLLLAMIFPSLLSPSDATSTYLRRRQVLKRLNKPPLATIQSPDGDIIDCVHISRQPAFDHPLLKDHTIQMQPSSQPSGLYGEATRPFTQTWNQNGEKCPDNTIPIRRTKEEDVMRATSLTTFGKKTHDMSSHPHSHLAGVTSGHYYGVAYATGDANYYGTKVTINVWQPTIATSGDFSLSQLWISAGSYDNKDLNTIETGWQVYPAMYGDDKTRLFIYWTRDAYNETGCYNLACSGFIQTNPQFVIGGSISPVSTYGDTQYEYDYLVWKDPAGGNWWLQVQGNNVGYWPSSIFTLLQTGVADSVEWGGEVNSPQITTPMGSGHFPEEGFGKATYSRAIQVVDSSNNLKPPNGVGLIAPLPSCYNVMTGSSSTTSWGTYIYYGGPGCPQNSQIEVM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g16640 | LOC_Os06g16640.1 | Chr06 | 9564124 | 9566967 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGCAGCGAGGACGTGGAGTAGGCGAGGCTTGGTGGCGCTCCTCCTGCTGGCTATGATCTTCCCAAGCTTATTGTCGCCATCGGATGCTACTTCTACTTATTTGAGGCGGCGGCAGGTCCTCAAGCGCCTCAACAAGCCTCCTCTCGCAACCATTCAGAGCCCAGATGGAGATATCATAGACTGTGTGCACATCTCCAGACAGCCTGCATTCGATCATCCTCTCCTCAAGGACCATACAATCCAGATGCAGCCTTCCAGCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCATTCACCCAAACATGGAATCAGAACGGCGAAAAGTGCCCTGACAACACTATACCAATCCGAAGGACCAAGGAGGAGGATGTCATGAGGGCCACCTCTCTTACAACGTTTGGCAAGAAGACGCACGACATGAGCTCTCACCCTCACTCTCACTTGGCTGGTGTCACAAGCGGCCACTACTATGGTGTAGCATATGCAACCGGAGATGCCAACTACTACGGAACCAAAGTGACCATCAATGTGTGGCAACCAACGATTGCAACATCTGGTGATTTCAGCCTGTCCCAACTATGGATCTCAGCGGGCTCCTATGATAACAAGGACCTTAATACCATTGAAACAGGATGGCAGGTGTACCCAGCTATGTACGGGGATGACAAAACTAGACTCTTCATCTACTGGACTCGTGATGCATATAACGAAACGGGATGTTACAACCTAGCATGCTCAGGATTCATCCAGACAAACCCGCAGTTCGTCATCGGTGGCAGCATATCCCCTGTCTCCACCTATGGTGACACACAATATGAGTACGATTATTTAGTTTGGAAGGACCCAGCGGGGGGCAATTGGTGGTTGCAAGTGCAAGGCAATAATGTGGGCTACTGGCCATCATCCATCTTCACCCTCCTGCAGACAGGCGTTGCCGACAGTGTGGAATGGGGTGGGGAGGTGAATTCGCCTCAAATTACCACACCCATGGGTAGTGGACATTTTCCTGAGGAAGGGTTCGGCAAGGCCACCTACAGCAGAGCAATCCAAGTTGTTGATTCCTCCAACAATCTCAAACCACCAAATGGTGTGGGCTTGATAGCTCCGTTGCCCAGTTGCTATAACGTCATGACTGGTTCCTCCAGTACCACCAGTTGGGGCACTTACATCTACTATGGCGGGCCTGGGTGCCCTCAAAACTCTCAAATTGAAGTGATGTAG
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| Protein seq | MAAARTWSRRGLVALLLLAMIFPSLLSPSDATSTYLRRRQVLKRLNKPPLATIQSPDGDIIDCVHISRQPAFDHPLLKDHTIQMQPSSQPSGLYGEATRPFTQTWNQNGEKCPDNTIPIRRTKEEDVMRATSLTTFGKKTHDMSSHPHSHLAGVTSGHYYGVAYATGDANYYGTKVTINVWQPTIATSGDFSLSQLWISAGSYDNKDLNTIETGWQVYPAMYGDDKTRLFIYWTRDAYNETGCYNLACSGFIQTNPQFVIGGSISPVSTYGDTQYEYDYLVWKDPAGGNWWLQVQGNNVGYWPSSIFTLLQTGVADSVEWGGEVNSPQITTPMGSGHFPEEGFGKATYSRAIQVVDSSNNLKPPNGVGLIAPLPSCYNVMTGSSSTTSWGTYIYYGGPGCPQNSQIEVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0278000 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g37000 | RBH | 0.0 | 0.0 | 0.098529 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0278000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0011350 | RBH | 0.0 | 24.676113 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011280 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011270 | RBH | 0.0 | 0.000000 | 1.250420 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0011290 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011430 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0159000 | RBH | 17.793352 | 0 | 0.260562 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0010890 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0156000 | RBH | 19.5622425 | 0 | 1.3739595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011420 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0011420 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011060 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0011370 | RBH | 0.0 | 0.0 | 0.000000 |
