Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os06g15340 OGI:06024420 | 1/16 Nipponbare | IRGSP 1.0 | MSU Chr06:8707840-8711439
Gene Symbol -
DNA seq

CTACGATTTCGACGTAGTAGTAGTCATTATCTCAGAAGCTAAGAACATATGAATTGTATTTCCGTCGTAGTAGAATTCACCGTTGGGATCAAGGATTTGTTCGTTGATGAATCCCATAAGTTGTTCTTGAACCACCGCGATAAATTCCTTGTGTGTGAGATTATCCCTTATACGAATAAACTATATGAATGTATGAAATTAATTAGTAAACAACAAATCGATACGTACGCAATGAAATTTTGAATTTATTTGTACGTACATCGAGCTCTCTTGTGGTGATGATTTGGTCTGCAAGGCAGTGGCAATACTCGCACACGTAGTAGCCGCACAAGTTAGTTCCCTGGGCTTGCTTTGCGCACTATATATAAATGACAAATGGTGAGAGATCTAATTAATATACACTTGTATGTATTTGAATTGGAGATTCAATATAAATTTAGAGCATGTGTACTCACAGGAAAATTAAACTTCCGCCTAAGTCTTTCTCTCCAATTGCCGCGGACCAAATGACGGAACCGATACCAAGCCCTACATGGAGTTTAAAGCTATGATCCGTAGTAGCAATTAATTATAACAAGATTCTTAATTAACATAGGAACTTATGACAGTACCTATCTATAAGTTCAAAAACCTTGTCAAACGTAGACTCTTTTTTATCCATTGAGTCATATACGTTGACGGTGCAGGCCTCCAAGTCGAAGAGTAAAAGGACCCAGTGGAATTTGCAATGTGCATCGGATGCATTACATATGAAACACTTAGCATGTTCATACGAGAATGAAATTTGGTATAGGAAGACAGTAAAAACTAACTCGGTGTTGTACGGCAATAGTATGAACGTCTTGTAATGCTGCGCCTTTAGGAGATGGACGAGATTGTCCTCTGTGGCTTGCGGATACTGGTCGAGCATTGCGACGTTTACTTTCCGAGGGTCGATGAATCCAGTATCGAAAACCCCCCGCCGTCGGGCCCTTTGAATCTCCATTCTACAACGATAAAAGGAAGTATATATTATATATAGTCTACTTATATACAAGGACCTAATTAACTAAAGGAAATGTAATAAGAAATCTAAATGAACGATACTTACAAAACCCAGCAACTCATAATAGAGACGTCGAGGGCGTCCAGCTGGTATAGTTCGTAGATACCCTTAAAATTGATCCAGAGAATATCTTCTCCTCGCAAGAAGTCCGTGTCCCTGATCCTCGCTCCGATCATCTCTCTACCGGTGGCACTCATCTCCATGTACAGTTGATGGAATTTGTACATTTGTGTGGATAGGGACTGCAACTGCTCAGGCTTGACAAGCGGTTTACCGAGTTCGTACATGTATTTCACTTCCGCCTTTTCGATTGGTGCGCCTCGTAGCAATTGATCTGTAGTTAGCCCGGTGTCATTAATAAATTCTTGTATTCCAAAATCTTCACTGGTCACCAACGGCTCGATCTCCTGGTTTGGTTGCTCTCCAAGCTGAGGGACTGGTTTGGACTTTCCAGAAGATGCTTTCTTAAGTGTTCGCTCATAGTCTGATAGCTTTATGGCCTCCTTGGCAGGTGCAGACATACCCCTGAAGAAGTTCCTAGCACTCGGGTCTATAGGAATCTTCTTTTCTCGACTTCGAGGCTTCAATTGTCTCCTGACTTCTGATGCCACATAAGCGTCAAGCTCCTCTTGCGTGCAATCGTACCCCGGGTCCTTGTTTTTTGCAGCGTCAACTTTCGCCTTCTTCGTTGCCCTTGTGGGGGCAGGCGGTGGAGCTTGGGAGGCCCTTGACTTGGAAGGTGCTGGACGAGGAGCTTGCGGAGGAGTCGGTGTAGGAGCCTGAGGAGGAGTCGGTGCAGGAGCCTGAGGAGGAGTCGGTGCAAAAGCCTGAGGTGGAGACGGTGCTGGAGCATGAGGAGGAGACGGTGCAGGAGCCTGAGGAGGAGATGGCGGAGCCGGAGGAGATGGTGCACGAGACGCCGCTTGTCGCCCAGGGGGATGATGTATCGCTTGCGCCGTAGTATAATGGCGTGGCTTGTGTCTCGTAGATGCGTCTCACCGTCTCCTCCAGGGTAGTCCAACTCGAGGTCCTCGTACGCGCCTTCCACCAACTCAATTTCGACCTTGGAGTATCCTGCTGGAATCGGCCTGCAGTGGTAAGTCCCTGAAGGGTCCGTTGGGATGGCCATGCCTGACGCCACCTTCACGTGGTGATAGGTTATTTATTAGTAATCAACATATATAAGCAGCAACTTGCGGAATGGACAAGTCTAAAATCTATAAACTACGAGCTTACCTTTATTGATAAGTTCTTGAAGGGAATATGCAGCTCACATGGTGTCTGCTGAGTGATATCATCAACGGGACAGGTGGATTCGTCCTGGGTTTGCATGGCGTCCATGCTTTGTGATCCTACCTACCCCGTTGAGGCGCAGCTGCTACGATTGCTGAAGGGCTCACCATTGCAGGAGGAATGTACGGCTGGGGATCATGGGACCGATGTGCGGCCATGCGTTCATCAACCTTCCTTGCCACCTCCTCTTGCATGCTGAGCTCGTAGCTCGATACCCTGTACTCAAGATCTGCAATCTTCGCCTCGGTATCTCTCTTGCTCCTTATCCGACTCCTGTACGTGTGGATGTCCTCCTTGAATCCAATCTTCCAAGGAATCACCCCTTTCCCTCATGTTCGTCCTGGATGCTCGGGAGTCTACAGGGCGAGTGACAGCTCGTCCTTCTCTCTGTCGGGTTGGAACGTGCCTTGAGAAGAGGCTTCCACTGCGTCCGTTAGTCGACGCGCAGCCTCGTGTATCTGATCGCTGAAGACCAGGGAGCCATCAACTGGGTTGAGCATTCCACCGTGAGCATAGTACCAGAACTTCGATCGATCCGGCCATTTAGCGGTGGCCGGTTCGATACCCCTCTCAAGCAAGCTTGCCTCCATCTCCTCCCACTTCGGCATCGCGACGCTATAGCCGCCTGACCCCAAGTGGTGATGGTACTTCTTCTTGGCGGCATTTTCATTGTTTCTTTCCATCATCGCCTGCCCTTGTTGACCTGTCTTATATGCAACGAACTCGTCCTAGTGATCCCTTAGCTTTGGGAATGTGTCGAAGTTCGGTGCCTGCCCCTTCAGGATGTATTTCTGGTACAGATCTCCCTTGAAGCTCTGAAACTGTTCTGCCATTTTCTTTAGAGTCCACCTTTTCACTTTGTTCTCTATACCCGCGGGAAGGGTGAATGTCTCAAGCATTGTGGTCCACAACATCTCTTTCTCCGAATCTGGGACAAAGCTCTCATGATCTCCGTGTGCCCTTGTTCTACGCCAATACACCGTACTGACAGGCACGTTATCCCGCACAAACCAACCGTTGTGTTGTACGTAGTTCTTGGCTGCTTCTGCCGGGGCACTAGGTCGGCCATCTTCGTCCACTTCCGTTATGATGTGCCGACCCTCTAGCTTCTTCGCGGCACCTCGTTGTCCGCATGCCCTCTTCTGTCCAGCGGAGGGTTGACTTCCACTAGCCTCCTCCTCCTCGTTCCCCTCTACATCCCTCTCCACGTTCTCCTCCTGGTTCCCCTCCGCATCCCTCTCCACGTTCCCTTCCTCGTTCAT

More
CDS seq

ATGAACGAGGAAGGGAACGTGGAGAGGGATGCGGAGGGGAACCAGGAGGAGAACGTGGAGAGGGATGTAGAGGGGAACGAGGAGGAGGAGGCTAGTGGAAGTCAACCCTCCGCTGGACAGAAGAGGGCATGCGGACAACGAGGTGCCGCGAAGAAGCTAGAGGGTCGGCACATCATAACGGAAGTGGACGAAGATGGCCGACCTAGTGCCCCGGCAGAAGCAGCCAAGAACTACGTACAACACAACGGTTGGTTTGTGCGGGATAACGTGCCTGTCAGTACGGTGTATTGGCGTAGAACAAGGGCACACGGAGATCATGAGAGCTTTGTCCCAGATTCGGAGAAAGAGATGTTGTGGACCACAATGCTTGAGACATTCACCCTTCCCGCGGGTCAACAAGGGCAGGCGATGATGGAAAGAAACAATGAAAATGCCGCCAAGAAGAAGTACCATCACCACTTGGGGTCAGGCGGCTATAGCGTCGCGATGCCGAAGTGGGAGGAGATGGAGGCAAGCTTGCTTGAGAGGGGTATCGAACCGGCCACCGCTAAATGGCCGGATCGATCGAAGTTCTGGTACTATGCTCACGGTGGAATGCTCAACCCAGTTGATGGCTCCCTGGTCTTCAGCGATCAGATACACGAGGCTGCGCGTCGACTAACGGACGCAGTGGAAGCCTCTTCTCAAGGCACGTTCCAACCCGACAGAGAGAAGGACGAGCTGTCACTCGCCCTGAGTCGGATAAGGAGCAAGAGAGATACCGAGGCGAAGATTGCAGATCTTGAGTACAGGGTATCGAGCTACGAGCTCAGCATGCAAGAGGAGGTGGCAAGGAAGGTTGATGAACGCATGGCCGCACATCGGTCCCATGATCCCCAGCCGTACATTCCTCCTGCAATGGTGGCGTCAGGCATGGCCATCCCAACGGACCCTTCAGGGACTTACCACTGCAGGCCGATTCCAGCAGGATACTCCAAGGTCGAAATTGAGTTGGTGGAAGGCGCGTACGAGGACCTCGAGTTGGACTACCCTGGAGGAGACGCACCGTCTCCACCTCAGGCTTTTGCACCGACTCCTCCTCAGGCTCCTGCACCGACTCCTCCTCAGGCTCCTACACCGACTCCTCCGCAAGCTCCTCGTCCAGCACCTTCCAAGTCAAGGGCCTCCCAAGCTCCACCGCCTGCCCCCACAAGGGCAACGAAGAAGGCGAAAGTTGACGCTGCAAAAAACAAGGACCCGGGGTACGATTGCACGCAAGAGGAGCTTGACGCTTATGTGGCATCAGAAGTCAGGAGACAATTGAAGCCTCGAAGTCGAGAAAAGAAGATTCCTATAGACCCGAGTGCTAGGAACTTCTTCAGGGGTATGTCTGCACCTGCCAAGGAGGCCATAAAGCTATCAGACTATGAGCGAACACTTAAGAAAGCATCTTCTGGAAAGTCCAAACCAGTCCCTCAGCTTGGAGAGCAACCAAACCAGGAGATCGAGCCGTTGGTGACCAGTGAAGATTTTGGAATACAAGAATTTATTAATGACACCGGGCTAACTACAGATCAATTGCTACGAGGCGCACCAATCGAAAAGGCGGAAGTGAAATACATGTACGAACTCGGTAAACCGCTTGTCAAGCCTGAGCAGTTGCAGTCCCTATCCACACAAATGTACAAATTCCATCAACTGTACATGGAGATGAGTGCCACCGGTAGAGAGATGATCGGAGCGAGGATCAGGGACACGGACTTCTTGCGAGGAGAAGATATTCTCTGGATCAATTTTAAGGGTATCTACGAACTATACCAGCTGGACGCCCTCGACGTCTCTATTATGAGTTGCTGGGTTTTAATGGAGATTCAAAGGGCCCGACGGCGGGGGGTTTTCGATACTGGATTCATCGACCCTCGGAAAGTAAACGTCGCAATGCTCGACCAGTATCCGCAAGCCACAGAGGACAATCTCGTCCATCTCCTAAAGGCGCAGCATTACAAGACGTTCATACTATTGCCGTACAACACCGAGTTAGTTTTTACTGTCTTCCTATACCAAATTTCATTCTCGTATGAACATGCTAAGTGTTTCATATGTAATGCATCCGATGCACATTGCAAATTCCACTGGGTCCTTTTACTCTTCGACTTGGAGGCCTGCACCGTCAACGTATATGACTCAATGGATAAAAAAGAGTCTACGTTTGACAAGGTTTTTGAACTTATAGATAGGGCTTGGTATCGGTTCCGTCATTTGGTCCGCGGCAATTGGAGAGAAAGACTTAGGCGGAAGTTTAATTTTCCTTTTATTCGTATAAGGGATAATCTCACACACAAGGAATTTATCGCGGTGGTTCAAGAACAACTTATGGGATTCATCAACGAACAAATCCTTGATCCCAACGGTGAATTCTACTACGACGGAAATACAATTCATATGTTCTTAGCTTCTGAGATAATGACTACTACTACGTCGAAATCGTAG

More
Protein seq

MNEEGNVERDAEGNQEENVERDVEGNEEEEASGSQPSAGQKRACGQRGAAKKLEGRHIITEVDEDGRPSAPAEAAKNYVQHNGWFVRDNVPVSTVYWRRTRAHGDHESFVPDSEKEMLWTTMLETFTLPAGQQGQAMMERNNENAAKKKYHHHLGSGGYSVAMPKWEEMEASLLERGIEPATAKWPDRSKFWYYAHGGMLNPVDGSLVFSDQIHEAARRLTDAVEASSQGTFQPDREKDELSLALSRIRSKRDTEAKIADLEYRVSSYELSMQEEVARKVDERMAAHRSHDPQPYIPPAMVASGMAIPTDPSGTYHCRPIPAGYSKVEIELVEGAYEDLELDYPGGDAPSPPQAFAPTPPQAPAPTPPQAPTPTPPQAPRPAPSKSRASQAPPPAPTRATKKAKVDAAKNKDPGYDCTQEELDAYVASEVRRQLKPRSREKKIPIDPSARNFFRGMSAPAKEAIKLSDYERTLKKASSGKSKPVPQLGEQPNQEIEPLVTSEDFGIQEFINDTGLTTDQLLRGAPIEKAEVKYMYELGKPLVKPEQLQSLSTQMYKFHQLYMEMSATGREMIGARIRDTDFLRGEDILWINFKGIYELYQLDALDVSIMSCWVLMEIQRARRRGVFDTGFIDPRKVNVAMLDQYPQATEDNLVHLLKAQHYKTFILLPYNTELVFTVFLYQISFSYEHAKCFICNASDAHCKFHWVLLLFDLEACTVNVYDSMDKKESTFDKVFELIDRAWYRFRHLVRGNWRERLRRKFNFPFIRIRDNLTHKEFIAVVQEQLMGFINEQILDPNGEFYYDGNTIHMFLASEIMTTTTSKS

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os06g15340 LOC_Os06g15340.1 Chr06 8707840 8711439 - MSU_osa1r7
CDS seq

ATGAACGAGGAAGGGAACGTGGAGAGGGATGCGGAGGGGAACCAGGAGGAGAACGTGGAGAGGGATGTAGAGGGGAACGAGGAGGAGGAGGCTAGTGGAAGTCAACCCTCCGCTGGACAGAAGAGGGCATGCGGACAACGAGGTGCCGCGAAGAAGCTAGAGGGTCGGCACATCATAACGGAAGTGGACGAAGATGGCCGACCTAGTGCCCCGGCAGAAGCAGCCAAGAACTACGTACAACACAACGGTTGGTTTGTGCGGGATAACGTGCCTGTCAGTACGGTGTATTGGCGTAGAACAAGGGCACACGGAGATCATGAGAGCTTTGTCCCAGATTCGGAGAAAGAGATGTTGTGGACCACAATGCTTGAGACATTCACCCTTCCCGCGGGTCAACAAGGGCAGGCGATGATGGAAAGAAACAATGAAAATGCCGCCAAGAAGAAGTACCATCACCACTTGGGGTCAGGCGGCTATAGCGTCGCGATGCCGAAGTGGGAGGAGATGGAGGCAAGCTTGCTTGAGAGGGGTATCGAACCGGCCACCGCTAAATGGCCGGATCGATCGAAGTTCTGGTACTATGCTCACGGTGGAATGCTCAACCCAGTTGATGGCTCCCTGGTCTTCAGCGATCAGATACACGAGGCTGCGCGTCGACTAACGGACGCAGTGGAAGCCTCTTCTCAAGGCACGTTCCAACCCGACAGAGAGAAGGACGAGCTGTCACTCGCCCTGAGTCGGATAAGGAGCAAGAGAGATACCGAGGCGAAGATTGCAGATCTTGAGTACAGGGTATCGAGCTACGAGCTCAGCATGCAAGAGGAGGTGGCAAGGAAGGTTGATGAACGCATGGCCGCACATCGGTCCCATGATCCCCAGCCGTACATTCCTCCTGCAATGGTGGCGTCAGGCATGGCCATCCCAACGGACCCTTCAGGGACTTACCACTGCAGGCCGATTCCAGCAGGATACTCCAAGGTCGAAATTGAGTTGGTGGAAGGCGCGTACGAGGACCTCGAGTTGGACTACCCTGGAGGAGACGCACCGTCTCCACCTCAGGCTTTTGCACCGACTCCTCCTCAGGCTCCTGCACCGACTCCTCCTCAGGCTCCTACACCGACTCCTCCGCAAGCTCCTCGTCCAGCACCTTCCAAGTCAAGGGCCTCCCAAGCTCCACCGCCTGCCCCCACAAGGGCAACGAAGAAGGCGAAAGTTGACGCTGCAAAAAACAAGGACCCGGGGTACGATTGCACGCAAGAGGAGCTTGACGCTTATGTGGCATCAGAAGTCAGGAGACAATTGAAGCCTCGAAGTCGAGAAAAGAAGATTCCTATAGACCCGAGTGCTAGGAACTTCTTCAGGGGTATGTCTGCACCTGCCAAGGAGGCCATAAAGCTATCAGACTATGAGCGAACACTTAAGAAAGCATCTTCTGGAAAGTCCAAACCAGTCCCTCAGCTTGGAGAGCAACCAAACCAGGAGATCGAGCCGTTGGTGACCAGTGAAGATTTTGGAATACAAGAATTTATTAATGACACCGGGCTAACTACAGATCAATTGCTACGAGGCGCACCAATCGAAAAGGCGGAAGTGAAATACATGTACGAACTCGGTAAACCGCTTGTCAAGCCTGAGCAGTTGCAGTCCCTATCCACACAAATGTACAAATTCCATCAACTGTACATGGAGATGAGTGCCACCGGTAGAGAGATGATCGGAGCGAGGATCAGGGACACGGACTTCTTGCGAGGAGAAGATATTCTCTGGATCAATTTTAAGGGTATCTACGAACTATACCAGCTGGACGCCCTCGACGTCTCTATTATGAGTTGCTGGGTTTTAATGGAGATTCAAAGGGCCCGACGGCGGGGGGTTTTCGATACTGGATTCATCGACCCTCGGAAAGTAAACGTCGCAATGCTCGACCAGTATCCGCAAGCCACAGAGGACAATCTCGTCCATCTCCTAAAGGCGCAGCATTACAAGACGTTCATACTATTGCCGTACAACACCGAGTTAGTTTTTACTGTCTTCCTATACCAAATTTCATTCTCGTATGAACATGCTAAGTGTTTCATATGTAATGCATCCGATGCACATTGCAAATTCCACTGGGTCCTTTTACTCTTCGACTTGGAGGCCTGCACCGTCAACGTATATGACTCAATGGATAAAAAAGAGTCTACGTTTGACAAGGTTTTTGAACTTATAGATAGGGCTTGGTATCGGTTCCGTCATTTGGTCCGCGGCAATTGGAGAGAAAGACTTAGGCGGAAGTTTAATTTTCCTTTTATTCGTATAAGGGATAATCTCACACACAAGGAATTTATCGCGGTGGTTCAAGAACAACTTATGGGATTCATCAACGAACAAATCCTTGATCCCAACGGTGAATTCTACTACGACGGAAATACAATTCATATGTTCTTAGCTTCTGAGATAATGACTACTACTACGTCGAAATCGTAG

More
Protein seq

MNEEGNVERDAEGNQEENVERDVEGNEEEEASGSQPSAGQKRACGQRGAAKKLEGRHIITEVDEDGRPSAPAEAAKNYVQHNGWFVRDNVPVSTVYWRRTRAHGDHESFVPDSEKEMLWTTMLETFTLPAGQQGQAMMERNNENAAKKKYHHHLGSGGYSVAMPKWEEMEASLLERGIEPATAKWPDRSKFWYYAHGGMLNPVDGSLVFSDQIHEAARRLTDAVEASSQGTFQPDREKDELSLALSRIRSKRDTEAKIADLEYRVSSYELSMQEEVARKVDERMAAHRSHDPQPYIPPAMVASGMAIPTDPSGTYHCRPIPAGYSKVEIELVEGAYEDLELDYPGGDAPSPPQAFAPTPPQAPAPTPPQAPTPTPPQAPRPAPSKSRASQAPPPAPTRATKKAKVDAAKNKDPGYDCTQEELDAYVASEVRRQLKPRSREKKIPIDPSARNFFRGMSAPAKEAIKLSDYERTLKKASSGKSKPVPQLGEQPNQEIEPLVTSEDFGIQEFINDTGLTTDQLLRGAPIEKAEVKYMYELGKPLVKPEQLQSLSTQMYKFHQLYMEMSATGREMIGARIRDTDFLRGEDILWINFKGIYELYQLDALDVSIMSCWVLMEIQRARRRGVFDTGFIDPRKVNVAMLDQYPQATEDNLVHLLKAQHYKTFILLPYNTELVFTVFLYQISFSYEHAKCFICNASDAHCKFHWVLLLFDLEACTVNVYDSMDKKESTFDKVFELIDRAWYRFRHLVRGNWRERLRRKFNFPFIRIRDNLTHKEFIAVVQEQLMGFINEQILDPNGEFYYDGNTIHMFLASEIMTTTTSKS

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g49290 SBH 0.056100 0.054673 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0142500 SBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0001430 SBH 0.000000 0.065257 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0192500 SBH 0 0.020483 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.