Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g13950 | OGI:06021770 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:7768090-7769904 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAGCTGAGGTTCTGTCAGAAACTATCCTTTTGGATGCAGTATGCTCCCCTTGCTGCATGAAACGCTTTAATCGGTCTGTTTCACCAATGACAGGTAACCATTCCATGAGAACATCCACGGTCACATAATCAGGAAAGCACCTCTCTTCCCTCATTTGGTCCATAAGTTCGAAAGCCTTTTCTGGCATGTTCTTATCACGAAGCCCCTTCAATAGAGCATTAAAGGTCGTTACATTTGCTGGCACACTCTTCTCCTTCATCTCATCGAACAGCTCAATGGCTAAATCAACATCTCCTCTCTTGCAGAGGAAGTCAATGAGAGTATTATATATCACATTGTTGGGATGAATACCAGATTCATCCATAGATCTTAAAATTCTCAATGCCTCATCAATTTTGCCAACTTTGCAATACCCATGTACAAGTGTACCAAAAGTTATAACAGAAGGCTGGCAACCATCATCGATCATCTTCCCCAATAATTCATCCACAGCCGCGAAATCCCCTGCCTTGCATGAACCAGACAACAAAGTATTATAGGTGCACACATCTGGCCGAATACCAACCTCCTTCATTTCCTGAAGAAGTTCATAAGCCTCATGCAACCTCTTCTTCCTGCAAAATCCAGCAATCAAAATGTTGTATGCCTTTGTGTCCAGCTTAAAGCCTGCCTCCTTCATCGATGAAGCCATAGAGCAAGCATCCTCCAGTCGGCCTGCTTGTGTCAATCCTGATATCATAGTGAAATACATGATCGCATCTGGTGAATGCCCTTCACTCATCTTCTCATGGAACAATTCCATGGCCATACCAACATTGTTGGTGTGGAGGAGAGCCCCAACCAAAGTGCTGTAGGTCACTGCATTGCCCTTGCCTTCTGGCCACACAGTTCTTTTCTCCCTGAAGAACTCCAGTGCAGCTCCGGTTCTCCCAGCCCGGCACAAGCCACCAACAATCGTGTTGAGGGTGACAATGTTTTGTGGCACACCCTCATTCTCCATCTTCTCTACCAACTCATAGGCCATTGAAATATTCCCCACGCGGCAGAATGCATCAATCAAGCAGTTGTAAGTGACAGTATTAGGAGGACACCCATGCACGCTACTCATCCGCTGCTCCACGAACGCGAGAGCCTCCTGGACCCGGCCGCTCTTGCACAGACCATCTACAACGGTGTTCAACGTCACGACATCTGGCCGGATATCTAAATCCTGGCGAGACATTCCATCGAGCACCCTGAGCGCGTCCCCAACACGGCCGGCCTTGCAGAGGCCGTTGACGAGAATGCCGTAGGTGACGACGTCGGGCCGGACGGAGGCACAACCCTGCATCAAGGCGTAGATCCGCGCCATGCCGGGGACGTCGCGGACGCGAGCGAGCGCCGCGAGGATGGAGTTGAAGGCGAAGACATCCGGCGCGGGGGCGCCAGCGGCGAGGGAGGCGGCGAGGAACCGCGCGGCGGGCTCGGGCGACGAGAAGCGCGCGAGGAGCTTGGACAGGATCGCGGACAGGAGCGGCGCGGAGGGCGGCGGGACGCGGTGGCGGGCGGGGAGGGCGAGGAGGAGCGCGAGCGAGGCGCGGGTGAGCTCGTGGGATGGCGCGGCGAGGAGGGAGTAGAGCGGCGCGGAGAGTGAGGGCGTGTCTCGGAGGAGGGCGAGGGCGGACGCGGAGGGGGCCGGGTCGGAGAGGAGCTCGGCGAGGAGCGACGCGGCGGTCGGGGCCGCGGCGGCCGGCGAGCCGGCGGAGGAGGAGGAACAGAGGCTGCGGCGGCGGCGGCGGCGGAGCGCGGGTGCGAGCCGCCGCGCTGCTGACAT
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| CDS seq | ATGTCAGCAGCGCGGCGGCTCGCACCCGCGCTCCGCCGCCGCCGCCGCCGCAGCCTCTGTTCCTCCTCCTCCGCCGGCTCGCCGGCCGCCGCGGCCCCGACCGCCGCGTCGCTCCTCGCCGAGCTCCTCTCCGACCCGGCCCCCTCCGCGTCCGCCCTCGCCCTCCTCCGAGACACGCCCTCACTCTCCGCGCCGCTCTACTCCCTCCTCGCCGCGCCATCCCACGAGCTCACCCGCGCCTCGCTCGCGCTCCTCCTCGCCCTCCCCGCCCGCCACCGCGTCCCGCCGCCCTCCGCGCCGCTCCTGTCCGCGATCCTGTCCAAGCTCCTCGCGCGCTTCTCGTCGCCCGAGCCCGCCGCGCGGTTCCTCGCCGCCTCCCTCGCCGCTGGCGCCCCCGCGCCGGATGTCTTCGCCTTCAACTCCATCCTCGCGGCGCTCGCTCGCGTCCGCGACGTCCCCGGCATGGCGCGGATCTACGCCTTGATGCAGGGTTGTGCCTCCGTCCGGCCCGACGTCGTCACCTACGGCATTCTCGTCAACGGCCTCTGCAAGGCCGGCCGTGTTGGGGACGCGCTCAGGGTGCTCGATGGAATGTCTCGCCAGGATTTAGATATCCGGCCAGATGTCGTGACGTTGAACACCGTTGTAGATGGTCTGTGCAAGAGCGGCCGGGTCCAGGAGGCTCTCGCGTTCGTGGAGCAGCGGATGAGTAGCGTGCATGGGTGTCCTCCTAATACTGTCACTTACAACTGCTTGATTGATGCATTCTGCCGCGTGGGGAATATTTCAATGGCCTATGAGTTGGTAGAGAAGATGGAGAATGAGGGTGTGCCACAAAACATTGTCACCCTCAACACGATTGTTGGTGGCTTGTGCCGGGCTGGGAGAACCGGAGCTGCACTGGAGTTCTTCAGGGAGAAAAGAACTGTGTGGCCAGAAGGCAAGGGCAATGCAGTGACCTACAGCACTTTGGTTGGGGCTCTCCTCCACACCAACAATGTTGGTATGGCCATGGAATTGTTCCATGAGAAGATGAGTGAAGGGCATTCACCAGATGCGATCATGTATTTCACTATGATATCAGGATTGACACAAGCAGGCCGACTGGAGGATGCTTGCTCTATGGCTTCATCGATGAAGGAGGCAGGCTTTAAGCTGGACACAAAGGCATACAACATTTTGATTGCTGGATTTTGCAGGAAGAAGAGGTTGCATGAGGCTTATGAACTTCTTCAGGAAATGAAGGAGGTTGGTATTCGGCCAGATGTGTGCACCTATAATACTTTGTTGTCTGGTTCATGCAAGGCAGGGGATTTCGCGGCTGTGGATGAATTATTGGGGAAGATGATCGATGATGGTTGCCAGCCTTCTGTTATAACTTTTGGTACACTTGTACATGGGTATTGCAAAGTTGGCAAAATTGATGAGGCATTGAGAATTTTAAGATCTATGGATGAATCTGGTATTCATCCCAACAATGTGATATATAATACTCTCATTGACTTCCTCTGCAAGAGAGGAGATGTTGATTTAGCCATTGAGCTGTTCGATGAGATGAAGGAGAAGAGTGTGCCAGCAAATGTAACGACCTTTAATGCTCTATTGAAGGGGCTTCGTGATAAGAACATGCCAGAAAAGGCTTTCGAACTTATGGACCAAATGAGGGAAGAGAGGTGCTTTCCTGATTATGTGACCGTGGATGTTCTCATGGAATGGTTACCTGTCATTGGTGAAACAGACCGATTAAAGCGTTTCATGCAGCAAGGGGAGCATACTGCATCCAAAAGGATAGTTTCTGACAGAACCTCAGCTTAG
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| Protein seq | MSAARRLAPALRRRRRRSLCSSSSAGSPAAAAPTAASLLAELLSDPAPSASALALLRDTPSLSAPLYSLLAAPSHELTRASLALLLALPARHRVPPPSAPLLSAILSKLLARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEHTASKRIVSDRTSA |
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| Function | Pentatricopeptide repeat-containing protein At3g61520, mitochondrial [UniProtKB/Swiss-Prot:Q9M316] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g13950 | LOC_Os06g13950.1 | Chr06 | 7768090 | 7769904 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCAGCAGCGCGGCGGCTCGCACCCGCGCTCCGCCGCCGCCGCCGCCGCAGCCTCTGTTCCTCCTCCTCCGCCGGCTCGCCGGCCGCCGCGGCCCCGACCGCCGCGTCGCTCCTCGCCGAGCTCCTCTCCGACCCGGCCCCCTCCGCGTCCGCCCTCGCCCTCCTCCGAGACACGCCCTCACTCTCCGCGCCGCTCTACTCCCTCCTCGCCGCGCCATCCCACGAGCTCACCCGCGCCTCGCTCGCGCTCCTCCTCGCCCTCCCCGCCCGCCACCGCGTCCCGCCGCCCTCCGCGCCGCTCCTGTCCGCGATCCTGTCCAAGCTCCTCGCGCGCTTCTCGTCGCCCGAGCCCGCCGCGCGGTTCCTCGCCGCCTCCCTCGCCGCTGGCGCCCCCGCGCCGGATGTCTTCGCCTTCAACTCCATCCTCGCGGCGCTCGCTCGCGTCCGCGACGTCCCCGGCATGGCGCGGATCTACGCCTTGATGCAGGGTTGTGCCTCCGTCCGGCCCGACGTCGTCACCTACGGCATTCTCGTCAACGGCCTCTGCAAGGCCGGCCGTGTTGGGGACGCGCTCAGGGTGCTCGATGGAATGTCTCGCCAGGATTTAGATATCCGGCCAGATGTCGTGACGTTGAACACCGTTGTAGATGGTCTGTGCAAGAGCGGCCGGGTCCAGGAGGCTCTCGCGTTCGTGGAGCAGCGGATGAGTAGCGTGCATGGGTGTCCTCCTAATACTGTCACTTACAACTGCTTGATTGATGCATTCTGCCGCGTGGGGAATATTTCAATGGCCTATGAGTTGGTAGAGAAGATGGAGAATGAGGGTGTGCCACAAAACATTGTCACCCTCAACACGATTGTTGGTGGCTTGTGCCGGGCTGGGAGAACCGGAGCTGCACTGGAGTTCTTCAGGGAGAAAAGAACTGTGTGGCCAGAAGGCAAGGGCAATGCAGTGACCTACAGCACTTTGGTTGGGGCTCTCCTCCACACCAACAATGTTGGTATGGCCATGGAATTGTTCCATGAGAAGATGAGTGAAGGGCATTCACCAGATGCGATCATGTATTTCACTATGATATCAGGATTGACACAAGCAGGCCGACTGGAGGATGCTTGCTCTATGGCTTCATCGATGAAGGAGGCAGGCTTTAAGCTGGACACAAAGGCATACAACATTTTGATTGCTGGATTTTGCAGGAAGAAGAGGTTGCATGAGGCTTATGAACTTCTTCAGGAAATGAAGGAGGTTGGTATTCGGCCAGATGTGTGCACCTATAATACTTTGTTGTCTGGTTCATGCAAGGCAGGGGATTTCGCGGCTGTGGATGAATTATTGGGGAAGATGATCGATGATGGTTGCCAGCCTTCTGTTATAACTTTTGGTACACTTGTACATGGGTATTGCAAAGTTGGCAAAATTGATGAGGCATTGAGAATTTTAAGATCTATGGATGAATCTGGTATTCATCCCAACAATGTGATATATAATACTCTCATTGACTTCCTCTGCAAGAGAGGAGATGTTGATTTAGCCATTGAGCTGTTCGATGAGATGAAGGAGAAGAGTGTGCCAGCAAATGTAACGACCTTTAATGCTCTATTGAAGGGGCTTCGTGATAAGAACATGCCAGAAAAGGCTTTCGAACTTATGGACCAAATGAGGGAAGAGAGGTGCTTTCCTGATTATGTGACCGTGGATGTTCTCATGGAATGGTTACCTGTCATTGGTGAAACAGACCGATTAAAGCGTTTCATGCAGCAAGGGGAGCATACTGCATCCAAAAGGATAGTTTCTGACAGAACCTCAGCTTAG
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| Protein seq | MSAARRLAPALRRRRRRSLCSSSSAGSPAAAAPTAASLLAELLSDPAPSASALALLRDTPSLSAPLYSLLAAPSHELTRASLALLLALPARHRVPPPSAPLLSAILSKLLARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEHTASKRIVSDRTSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.181931 | 0.318591 | 0.253615 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0249500 | RBH | 0.366582 | 0.476148 | 1.342472 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49830 | RBH | 0.277974 | 0.343613 | 0.209416 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0249500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0009970 | RBH | 0.052335 | 0.603212 | 1.221832 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0009870 | RBH | 0.141559 | 1.750063 | 0.172870 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0009860 | RBH | 0.736063 | 1.228352 | 0.695762 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0009860 | RBH | 0.074289 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0009960 | RBH | 1.720759 | 1.619045 | 1.706047 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0129100 | RBH | 0.4023515 | 1.818422 | 1.028875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0009520 | RBH | 0.008826 | 0.088373 | 0.067903 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0132200 | RBH | 0.4022095 | 2.5932075 | 3.4699105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0009980 | RBH | 0.060003 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0009800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0009840 | RBH | 0.0 | 4.218210 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0010020 | RBH | 0.271378 | 0.131530 | 0.126837 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0009760 | RBH | 0.130100 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009680 | RBH | 0.086096 | 0.238532 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0009970 | RBH | 0.0 | 2.170775 | 0.432459 |
