Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g13770 | OGI:06021400 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:7635955-7637290 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATACGACAATCTTGCCATAACAGTCCTCAATAGCACCAACTCGTGCTTCTCGAGTCCATCGCTTCAAAATATATCTCTTTGGCAAAGACTTAATATTCATCACATCAAGGACTTTCAAAGCATGACTGCACAATATTCCAGTCCTTTCAAATTGTCCACAGGTGCACAATGCCTGTTGCTCTGCATAATTGCCTACAACTTTGCACTCCTCTTCAAATGTTGACGCTTCACCAGGAGCCTCAATTGCAACAATGAATTCATTATGTTCTGATGACTTGATGTATGCAGCCATGGATCTTTCATATTCATTTTGAAAATATTCAAATATACAAGGTGTGTAAATCTTGCTTGCTTGCACCAATATAGGAACTCTCATTTTAATTCTAGGCAATTTTTTTCTTGCTTCATATTCTGCATCTAATTCGTTGTCTCGTTTTCCTTTGATAACTCTTTCAAGATTATTGAAAAACTGAATAATGTCAAGATCAGACTTGAGATGGTTTTTCAAGTCATTATTTAAGCTCTCACTCAACTGTGTGCTTCTCATCCCTAATGTGTAAACATTCCTCATGTAGCATTCCGCCCATTTCTCTTTTACCTTATATATACTGTTTAGCCAAGTCTGCTTGTGCACCTTGCTTCTGATGGTACTGAAAGTTTCCTCAAAAGTTGCTTCATCTTCATATTCATACATACAAGCACTGAAATCAGACAAAATGTTTGTCTTCTTTCTTGGTACGAGGTAAGTGTTTGATAGCATTTTGCATTATATGAAAAGTGCACAATCCATGCCATGCTTCTGTAAATACCACCTCAATTGCCTTTCCCATTGCAATATCTTGATCTGTGTAGATTGTTGTAGGCTGTTTTTGATTATGTACAGCTAAAAAGGTCTCAAACAACCATTTGAAAGAATCAAATGTTTCATCATACAAAAGAGCGGCTCCAAAAATGACGGTCTCTCTAAAATGGTTGAATCCAACAAAGACACCAAAGGGCATGTATTCTTTGTTTGTCCCAAATGTTGTGTCAAAAGTAACAACATCTCCAAACTGAGCATAGTCGATTATCATCTTAGCATCAGCCCAAAAAATATTTGTTATTTGTTCTTCACAATCCAACTGAAGGGCATAATGAAATGAAGTGTTCTCTGCAACTTTGTCCTAAAAGTACTTCAACATACTTCCGGCTTCGCCATACATCAACTCCCTTTGACGCTTGGTTCGTAAATGGTTCTTGAGAACACGACGTGTATAACCAAGGTTTACTGAACCACCAACTTGCCGACTAGCAAGCTCATGTGCAGCTTTTGGTCCAATGCCCGAATCATCCAT
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| CDS seq | ATGGATGATTCGGGCATTGGACCAAAAGCTGCACATGAGCTTGCTAGTCGGCAAGTTGGTGGTTCAGTAAACCTTGGTTATACACGTCGTGTTCTCAAGAACCATTTACGAACCAAGCGTCAAAGGGAGTTGATGTATGGCGAAGCCGGAAATGAAGCAACTTTTGAGGAAACTTTCAGTACCATCAGAAGCAAGGTGCACAAGCAGACTTGGCTAAACAGTATATATAAGGTAAAAGAGAAATGGGCGGAATGCTACATGAGGAATGTTTACACATTAGGGATGAGAAGCACACAGTTGAGTGAGAGCTTAAATAATGACTTGAAAAACCATCTCAAGTCTGATCTTGACATTATTCAGTTTTTCAATAATCTTGAAAGAGTTATCAAAGGAAAACGAGACAACGAATTAGATGCAGAATATGAAGCAAGAAAAAAATTGCCTAGAATTAAAATGAGAGTTCCTATATTGGTGCAAGCAAGCAAGATTTACACACCTTGTATATTTGAATATTTTCAAAATGAATATGAAAGATCCATGGCTGCATACATCAAGTCATCAGAACATAATGAATTCATTGTTGCAATTGAGGCTCCTGGTGAAGCGTCAACATTTGAAGAGGAGTGCAAAGTTGTAGGCAATTATGCAGAGCAACAGGCATTGTGCACCTGTGGACAATTTGAAAGGACTGGAATATTGTGCAGTCATGCTTTGAAAGTCCTTGATGTGATGAATATTAAGTCTTTGCCAAAGAGATATATTTTGAAGCGATGGACTCGAGAAGCACGAGTTGGTGCTATTGAGGACTGTTATGGCAAGATTGTCGTATAA
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| Protein seq | MDDSGIGPKAAHELASRQVGGSVNLGYTRRVLKNHLRTKRQRELMYGEAGNEATFEETFSTIRSKVHKQTWLNSIYKVKEKWAECYMRNVYTLGMRSTQLSESLNNDLKNHLKSDLDIIQFFNNLERVIKGKRDNELDAEYEARKKLPRIKMRVPILVQASKIYTPCIFEYFQNEYERSMAAYIKSSEHNEFIVAIEAPGEASTFEEECKVVGNYAEQQALCTCGQFERTGILCSHALKVLDVMNIKSLPKRYILKRWTREARVGAIEDCYGKIVV |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g13770 | LOC_Os06g13770.1 | Chr06 | 7635955 | 7637290 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATGATTCGGGCATTGGACCAAAAGCTGCACATGAGCTTGCTAGTCGGCAAGTTGGTGGTTCAGTAAACCTTGGTTATACACGTCGTGTTCTCAAGAACCATTTACGAACCAAGCGTCAAAGGGAGTTGATGTATGGCGAAGCCGGAAATGAAGCAACTTTTGAGGAAACTTTCAGTACCATCAGAAGCAAGGTGCACAAGCAGACTTGGCTAAACAGTATATATAAGGTAAAAGAGAAATGGGCGGAATGCTACATGAGGAATGTTTACACATTAGGGATGAGAAGCACACAGTTGAGTGAGAGCTTAAATAATGACTTGAAAAACCATCTCAAGTCTGATCTTGACATTATTCAGTTTTTCAATAATCTTGAAAGAGTTATCAAAGGAAAACGAGACAACGAATTAGATGCAGAATATGAAGCAAGAAAAAAATTGCCTAGAATTAAAATGAGAGTTCCTATATTGGTGCAAGCAAGCAAGATTTACACACCTTGTATATTTGAATATTTTCAAAATGAATATGAAAGATCCATGGCTGCATACATCAAGTCATCAGAACATAATGAATTCATTGTTGCAATTGAGGCTCCTGGTGAAGCGTCAACATTTGAAGAGGAGTGCAAAGTTGTAGGCAATTATGCAGAGCAACAGGCATTGTGCACCTGTGGACAATTTGAAAGGACTGGAATATTGTGCAGTCATGCTTTGAAAGTCCTTGATGTGATGAATATTAAGTCTTTGCCAAAGAGATATATTTTGAAGCGATGGACTCGAGAAGCACGAGTTGGTGCTATTGAGGACTGTTATGGCAAGATTGTCGTATAA
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| Protein seq | MDDSGIGPKAAHELASRQVGGSVNLGYTRRVLKNHLRTKRQRELMYGEAGNEATFEETFSTIRSKVHKQTWLNSIYKVKEKWAECYMRNVYTLGMRSTQLSESLNNDLKNHLKSDLDIIQFFNNLERVIKGKRDNELDAEYEARKKLPRIKMRVPILVQASKIYTPCIFEYFQNEYERSMAAYIKSSEHNEFIVAIEAPGEASTFEEECKVVGNYAEQQALCTCGQFERTGILCSHALKVLDVMNIKSLPKRYILKRWTREARVGAIEDCYGKIVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0166100 | SBH | 1.972731 | 1.408459 | 1.148769 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g13740 | SBH | 0.0 | 0.000000 | 0.118465 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0166100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0009940 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004770 | SBH | 0.158144 | 1.850090 | 1.136748 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0009830 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0009830 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0010580 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0126600 | RBH | 0 | 0.004157 | 0.026674 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004650 | SBH | 0.299945 | 0.155916 | 0.726088 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0129500 | RBH | 0 | 0 | 0.014438 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004910 | SBH | 0.203770 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004750 | SBH | 0.618150 | 3.085561 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004760 | SBH | 0.886628 | 6.041668 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0010630 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004660 | SBH | 0.217776 | 5.772801 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009650 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0009940 | SBH | 0.0 | 0.0 | 0.0 |
