Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g13250 | OGI:04042910 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:7293011-7296554 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAACTTGGTCGAATTTGACTGAGCAAAAGATTAAGTTTTGCTTCCATCTCAGATTGACTCCTCTTCATCTCCTCTCGGTCTTTAATCCTTGCCTGCTCAGATTCTTGCACTTTGTTTGACAAATCAGCCACCTGTGCACGAAGCTCAGCATTGGTCCTTTTCTCCGCTTCTAGTTCTGTCTCAGTGCTCTGCTCACTGAATCTAGGCTGGGCATTATGGAACCCCACATTCTTCAAGAACCGATTCTTCTTGGTGTTCTCAGCAAGCACATCAGCAACAACTTGAGCCGCTGACTTAAGTTCTTCACCTTCTGTTGTTGTAGATAGCTTGTTTTCCATCCGAGTCTAGCAAGAAAGTAGCAAACATGGTTGATGTTGAGAGAATTAAAAATAAGCACTACAAAGATCAAAGTCTGAAAATTATCTTACAATAGCCTCCTGTACAACAGGGGTGTAGCATTTTTTTTTTCTTGCTGTAGTGGAACTCCTTGAACAAATCAAATGCATTAGGTTCTTCATCATTGTATTTGTCATCCTGAGAACAACATATATGCATTAGGTCCAGCATGAATTAAGATGTTACGAAAATCTGGGCAGCTACTGTTCAATTGAGAATCTAAAAGAACATGTTCAACTAATTTCTAGCCTCATTTGTTGCACACAGTCACACTATGTTTTCCACTTAGACAAACAACTGCAACAGAGGTCTTTCACTGCATACACAGACATAAAAACAATAACTTTTAATCTATTAACACACTCAACTTAGACATAGATGGAAACCTAACTCGTCACCTTTCACATAATGTATTGGCATCGGATCAGATATAGTGTCCTTGAACATTCCACAAACTAATGGACTCTCATGAACATAACAACATGAGCATGGACATCATCTTGTTTAGGCTGAGGCAGACGTATTTAAGCAGTAGCTTGTTCATACAAAAAATTATATGGTGCTTAAAATGGCCCACTTACCAAATTTTCAACATGAACCATGTAGGCACGAGATCCGGTTGTGTGATGGTACTTAACATTCCCTCGGTTTTCTTTGTTCTTTTGACACATCTCCTACATTAAAGACAACAATACATGTAAGGTTGGTGATAGATTAGCATGCACAAGGCATCAATCTGGTTTTGCAGAGAGAACATACCATCTTTTGGAGACTCTTCCATGATTCTAGGAGTTGAGTCCACTGTTCATTACTCATGAATTTGACAGGAGAAGTTTTTGTAACCAAATGTAGTGGAAAAGGATCAAAATATTTTTGCTTCAGCCTGTATCTTTGTTGGCGAACTGCGGACTTCATCATCTCAGTACAAGCCATTTTAACTGTATCATCCTCTATGTTTATGTCAAACTTGGCCTAATCGAATGGAAGAACATTTATAGAAAAGAATATCAATTCAGTAATTTATGGCTTAAAATAACAAACAATGGATCTTCTATTGAGACTAAATGTGGAAAGGACCAGAGAATGCATGTACCTTTAGTTTTCCTAAGAACAGATTAACGTACGCAGATGCAGGTTTTTCCTTGTATAGCTTCCAATGCGGGAGTATAGGCACATGGTTCCTAACTATGATGTTGCATTCAGTTGCAAACTTTGCAGCAACAAGAGGAACCACTGGCCTTATATTCCCTTCAGTTATGACAACTTGCAGCTTGCCACGGCACGCTCAGTTTAACCTTTGGAGACCACGTCCCATATTATTTCTCCGGTCCCTTCTCTCCACTCCCCCTAGTTGTAAATGTACATTGCAGTTGAAATTAAAACTAAAATTATTGAGGTGAAGCAAACATTGATCCAAGATGATCATGAATTGAAAGCTTTGCATACAAATATTGATCAACTGAGACAATATGAAATATGGAAAATAGATGAACAAACTCACCTTCATTGGTAATCTGGTTGTGGTCACTGTGTTGAGTAATGCCATCAACTACATCAGCCACAAGGGTGTTGTCATCATGCTGGGTGAAGCCATCTAAAAAAGGGCAGCAAGTAAGAAAAGCATTCATCATACAAACAAAACTTACATAACGACAGTAAGAATTCATCACCTCCATTGTCCATATGGTTGTGCTGATTATGTTGGTCGATAGCATCAGACCCGGTGGTCATGTGAGTGTTGTCAAGTAAAAATGTGAAAATTGGTTTCATTAATTTTTTTTATTCTTAAAACTCAAGTTAATATTTTCAAAAGGTAAACAAGCAATAAACTTAGATCAGCAAGTTAAACATTTTTATAGCTGACTCATGTTAATGGAATGTAACTAAGAAATGTGGCAGTAGAACTGGCCTTCAACAGCAGCCTGTGTGTGGTCATCTAAGTTGCCATCGAGATCTCCAGCGTTAGCTTGTGATGTAGCTGGCATACAAATATCACTTGGTGTGAGACTTGCATCTTGTTGGGCAATGCTTTTCTTTGACCTTGTAACTTTAGGAGTCATTTGCTCTGCATAAACTCTCTTGCGAGACCGAAACTTGACTCCACCAGTCTGGATGCTTGAAGTTTTGTTGTTACAGTTCTTGCGAGTCTTCTCCTTAGAGCACTGCTGGAAAGAAAAGCATGGATTGGTCAACATAGTATTACATTGAATTAGGAAGAAAAATAACAAGTTAAGACTTGTCAACATAAAGGAATTACAACCTTTGCATTCTCATCATCAATCAAATCTCCTTCACCAGTATCATCCTTTAAAGGATCATACTCGGACTCCGAATCTCCACTTTGATTCTGGTCAGAATGAACACCAACATAGCCTTCCAAAACTGGGGTGTAGCGATCAGGAAGTCCAAGCTCCTTCAGCCTTGCACTGTTCTTCATGCATTCTTTTAGGCGCTCCAATTCGTATGGACTCAGATGAACTGGTGGATGGTAGACAGCAACAATAAATTAATGTGTTACTGACTCAGTGAACAATAGATAAGCCACAAGAGTAGCAATAGCACACCATGTCTTGGATGAGGTACAGATGAATTGGAATATTATTAATGGTTAGTGGACTCAAAGATATATATTGCTAGTAAAAAAAATGATATATACTGCTGGCTCTTTGAGATGCCTTTCAACTAAACGTTGTTTAAAATATTGTCATGAATTGCATGCACAAGCATCAGGAGAATAGATGAACTGATCAGGAATTTGTCAACAAGACTGAAAGTGCCATATGCTAAATGAATTATTGTACTCTTTGATTTTTGTTTACCAGTAATTAAGCAAAGTATGACTCTCTCCCCCTCCATTCCATTCCATATTCATGTATAACTGTAGGGTATGAACAAGAATCATCTTGTGAACCTATTTTTTACTGCAAAGGCAGAAGCATGTACCCTATCTTTTCAGGTAAAATGACCAACACTGCAAATGGAAGTTCTAACTATAATCCAGCAAACAGAGCTTTGCATCTATCATCCCTCAATTTCCCAAATCCACCGGTCTTCTCCACAAATCCAAACGCCACAAAAAAGTCAAGAGCGAGGTGATGTTAGGACTATACCTGCTACCCGATTTCCTTTTGGATTCTTCGGCGCCAT
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| CDS seq | ATGGCGCCGAAGAATCCAAAAGGAAATCGGGTAGCAGTTCATCTGAGTCCATACGAATTGGAGCGCCTAAAAGAATGCATGAAGAACAGTGCAAGGCTGAAGGAGCTTGGACTTCCTGATCGCTACACCCCAGTTTTGGAAGGCTATGTTGGTGTTCATTCTGACCAGAATCAAAGTGGAGATTCGGAGTCCGAGTATGATCCTTTAAAGGATGATACTGGTGAAGGAGATTTGATTGATGATGAGAATGCAAAGCAGTGCTCTAAGGAGAAGACTCGCAAGAACTGTAACAACAAAACTTCAAGCATCCAGACTGGTGGAGTCAAGTTTCGGTCTCGCAAGAGAGTTTATGCAGAGCAAATGACTCCTAAAGTTACAAGGTCAAAGAAAAGCATTGCCCAACAAGATGCAAGTCTCACACCAAATGGCTTCACCCAGCATGATGACAACACCCTTGTGGCTGATGTAGTTGATGGCATTACTCAACACAGTGACCACAACCAGATTACCAATGAAGTTAGGAACCATGTGCCTATACTCCCGCATTGGAAGCTATACAAGGAAAAACCTGCATCTGCGTACGTTAATCTGTTCTTAGGAAAACTAAAGGCCAAGTTTGACATAAACATAGAGGATGATACAGTTAAAATGGCTTGTACTGAGATGATGAAGTCCGCAGTTCGCCAACAAAGATACAGGCTGAAGCAAAAATATTTTGATCCTTTTCCACTACATTTGGTTACAAAAACTTCTCCTGTCAAATTCATGAGTAATGAACAGTGGACTCAACTCCTAGAATCATGGAAGAGTCTCCAAAAGATGGAGATGTGTCAAAAGAACAAAGAAAACCGAGGGAATGTTAAGTACCATCACACAACCGGATCTCGTGCCTACATGGTTCATGTTGAAAATTTGACTCGGATGGAAAACAAGCTATCTACAACAACAGAAGGTGAAGAACTTAAGTCAGCGGCTCAAGTTGTTGCTGATGTGCTTGCTGAGAACACCAAGAAGAATCGGTTCTTGAAGAATGTGGGGTTCCATAATGCCCAGCCTAGATTCAGTGAGCAGAGCACTGAGACAGAACTAGAAGCGGAGAAAAGGACCAATGCTGAGCTTCGTGCACAGGTGGCTGATTTGTCAAACAAAGTGCAAGAATCTGAGCAGGCAAGGATTAAAGACCGAGAGGAGATGAAGAGGAGTCAATCTGAGATGGAAGCAAAACTTAATCTTTTGCTCAGTCAAATTCGACCAAGTTAA
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| Protein seq | MAPKNPKGNRVAVHLSPYELERLKECMKNSARLKELGLPDRYTPVLEGYVGVHSDQNQSGDSESEYDPLKDDTGEGDLIDDENAKQCSKEKTRKNCNNKTSSIQTGGVKFRSRKRVYAEQMTPKVTRSKKSIAQQDASLTPNGFTQHDDNTLVADVVDGITQHSDHNQITNEVRNHVPILPHWKLYKEKPASAYVNLFLGKLKAKFDINIEDDTVKMACTEMMKSAVRQQRYRLKQKYFDPFPLHLVTKTSPVKFMSNEQWTQLLESWKSLQKMEMCQKNKENRGNVKYHHTTGSRAYMVHVENLTRMENKLSTTTEGEELKSAAQVVADVLAENTKKNRFLKNVGFHNAQPRFSEQSTETELEAEKRTNAELRAQVADLSNKVQESEQARIKDREEMKRSQSEMEAKLNLLLSQIRPS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g13250 | LOC_Os06g13250.1 | Chr06 | 7293011 | 7296554 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGCCGAAGAATCCAAAAGGAAATCGGGTAGCAGTTCATCTGAGTCCATACGAATTGGAGCGCCTAAAAGAATGCATGAAGAACAGTGCAAGGCTGAAGGAGCTTGGACTTCCTGATCGCTACACCCCAGTTTTGGAAGGCTATGTTGGTGTTCATTCTGACCAGAATCAAAGTGGAGATTCGGAGTCCGAGTATGATCCTTTAAAGGATGATACTGGTGAAGGAGATTTGATTGATGATGAGAATGCAAAGCAGTGCTCTAAGGAGAAGACTCGCAAGAACTGTAACAACAAAACTTCAAGCATCCAGACTGGTGGAGTCAAGTTTCGGTCTCGCAAGAGAGTTTATGCAGAGCAAATGACTCCTAAAGTTACAAGGTCAAAGAAAAGCATTGCCCAACAAGATGCAAGTCTCACACCAAATGGCTTCACCCAGCATGATGACAACACCCTTGTGGCTGATGTAGTTGATGGCATTACTCAACACAGTGACCACAACCAGATTACCAATGAAGTTAGGAACCATGTGCCTATACTCCCGCATTGGAAGCTATACAAGGAAAAACCTGCATCTGCGTACGTTAATCTGTTCTTAGGAAAACTAAAGGCCAAGTTTGACATAAACATAGAGGATGATACAGTTAAAATGGCTTGTACTGAGATGATGAAGTCCGCAGTTCGCCAACAAAGATACAGGCTGAAGCAAAAATATTTTGATCCTTTTCCACTACATTTGGTTACAAAAACTTCTCCTGTCAAATTCATGAGTAATGAACAGTGGACTCAACTCCTAGAATCATGGAAGAGTCTCCAAAAGATGGAGATGTGTCAAAAGAACAAAGAAAACCGAGGGAATGTTAAGTACCATCACACAACCGGATCTCGTGCCTACATGGTTCATGTTGAAAATTTGACTCGGATGGAAAACAAGCTATCTACAACAACAGAAGGTGAAGAACTTAAGTCAGCGGCTCAAGTTGTTGCTGATGTGCTTGCTGAGAACACCAAGAAGAATCGGTTCTTGAAGAATGTGGGGTTCCATAATGCCCAGCCTAGATTCAGTGAGCAGAGCACTGAGACAGAACTAGAAGCGGAGAAAAGGACCAATGCTGAGCTTCGTGCACAGGTGGCTGATTTGTCAAACAAAGTGCAAGAATCTGAGCAGGCAAGGATTAAAGACCGAGAGGAGATGAAGAGGAGTCAATCTGAGATGGAAGCAAAACTTAATCTTTTGCTCAGTCAAATTCGACCAAGTTAA
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| Protein seq | MAPKNPKGNRVAVHLSPYELERLKECMKNSARLKELGLPDRYTPVLEGYVGVHSDQNQSGDSESEYDPLKDDTGEGDLIDDENAKQCSKEKTRKNCNNKTSSIQTGGVKFRSRKRVYAEQMTPKVTRSKKSIAQQDASLTPNGFTQHDDNTLVADVVDGITQHSDHNQITNEVRNHVPILPHWKLYKEKPASAYVNLFLGKLKAKFDINIEDDTVKMACTEMMKSAVRQQRYRLKQKYFDPFPLHLVTKTSPVKFMSNEQWTQLLESWKSLQKMEMCQKNKENRGNVKYHHTTGSRAYMVHVENLTRMENKLSTTTEGEELKSAAQVVADVLAENTKKNRFLKNVGFHNAQPRFSEQSTETELEAEKRTNAELRAQVADLSNKVQESEQARIKDREEMKRSQSEMEAKLNLLLSQIRPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0240600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g37230 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0240600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018400 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0009340 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022810 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029440 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029120 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0293300 | SBH | 2.8673305 | 3.7494975 | 22.2278025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028840 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0407200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029100 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029040 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029300 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029470 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029270 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009220 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015460 | SBH | 0.0 | 0.0 | 0.0 |
