Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g13060 | OGI:06019840 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:7159988-7164156 | ||||||||
| Gene Symbol | OsDjC54 | ||||||||||
| DNA seq | CGATGCAAGAATACTTTGCTCCAGCTTAGCATGCATCAACAAACTACACATGAATGACAAATCCAAAACTGGGTAAATGGTTTGTCTTTCTTACACATCAGGAATCCAGACGAGGGAAGAAGGTACATTATGTACAGCAAGCATATGGTGAAAAGAACCTATATTTACAACTGCTTACAAAGGGAATCGAAACAAAACTAAACATACGAATATACGATGAAAAGAATCATAATTGGACAATGGTGGCTGCACATATGACAAGCTATGGATGCTTCTATCTCACGATCACATCACGAGCTCGGTCTCTTAATTATTTTGATACAGTTCGATGAGTGGCCACTGACCAAAAGGAGCTTCAAGGGGATCGAAAAAAATATTTCTCCAACCATCTCAGGCCTGCACCCAATCTTTCTAGAATAAACCAGGGAGGGGTTCTGTTATGAATGGTCAGGGCCAAAATGCTCTGTATTTTGGTTAAACAGTATGATGCAGGGAATTACCTGCAAAAACCAAAGGTGAAAGATAAGTATACTGAGGATACTTCATAAGAAAATACTAAAAATAGCACAGCGAAGAATATATTACATCACTCAGCATGGCTTTCTCCTGTCAATTTTGAAAGGAATGTTTAACCATTTCTTCTTTGGGAACCGCTCTTTGGTTTTCTTTTCGTTTGAATCTTCATCTGCACTTCTGCATCCACCCGTGGGTTGGTCTTTCACTTTCTTTTCCTTTCTCTGACTGTTTTCCTCCTCACCTTTGGAAAATTTTGAAGGCGATTTAGCTTTACTCCTGCTTGAACTCCTCTTCAGTGGTGAATTGTTGGTATAGGACGCATGGATTTCATTCCTTTCCTTCAGAAGATTATCGATCTACAAAAAGACCATGTGGACTAAGAAAATAGTAGAATACTCCCTCCGTCCCATAATATAAGGGATTTTAGGTGGATGTGACGCATCCTAGTACAATGAATCTGGACAGTACTAGGATATGTCACATCCACCCAAAATCCCTTATATTATGGGACGGAGTACAAAAATGACTATGCAATAGAATTGTACATACTGCTTGCATTTCTTGTGTGTATCTGCTGGTCATCTCAGTGAACTTTGCCAAAACCTGTGAATCTCGGAATATGAAAAATGTTGACAGCTGACGCCCAGTGCATAGAAAGAATGTGAGGGAAAACAAGGGGAAAGGCAGCAACCACATACTTCTCTGTACTCGGTCTCAAATTTGGATAGCTCTGCTCGTTTTGTGAGTATCTTTGCCTCAACACTCTGGAGCTTCTCCTTTTCAGCAGGGAAAGATTCACCACATACAACCTCTATAGTATAGTTCACACTTCTGAAGAAATTGTCACCTGAGTGAAGCGTAGAGTTTAAGGGGATTCGTACTGTCTTAAGTAATTGACACTGCACCAACAAACAAAGTGATTACCATAGACAGCAAAGAAGTGTGTGCCTGGTTTTAGTTCATTTATATCACATGGTTGGAAGCTGTCCAATCTTTTAAAGAAGGCACTATCAGGATCCTTTGCAGCAGCTGCCTGAAATTAAAAGGAACTTGTGAGAAATGAATCACAGAGAAGCACTTGGAGGATTCAACAACGATGACACATATGTAAACTCACCAGGTTGTTTTGTTCAAAACGATACACAGGAAAGCCAAGAAAATACATCCCAGCAGAAGTAACCTTCCCAGTCTTTACACTGTCTTCCTGCGAAAGGTTGTGCAGATGGAACAAGAGAAAACAAACTTAAGCCACTTGCATATTGCATGAAGCAAAGGTTGTCAAAGCAAAAACATATTCACCGGTTTGCTCATTACATGGTGTTACAGTTTAATAGCGAATTCAATAGACAAGAGTATAGGACTACTCAAACTTGTTTGTGAATCTGCAGGACTGACAACTATGCAGCATTTTATATTGCTACATAGTTGAAACTATGATAATTTTGCAGATAATAAGCTAACTTTTAAGTCATTTTTGCACACACAATGTTTAAATAGCGAGACCAATTTCTTAGTAATGGATAGTTTAGATAGGGATTGCGCGCAACCCCTTGAGGTAGGCAGGGTTTTAATCTCTATCCAAAACCTCTACATGCTCAGATGTAAAGCTGATTAAATTTATGTGCAGAAGAACAGGATTCTGGCACTCTTACCTGCAAAGCAAGGCTCAGGCCACCATTTTCTTCAAGCTCAAAGTAAAGCAACTGAAATTGTATGCAAGAATAACAATGTTAAGGGTCTAAGTAAAGGAAAAGGACATTAAACCAAGAGAATTTTATGTATTCAATCAATAGTATTGAATAAATGTTTTACATGCTAAGCATTGTGTGACTCAACTTTATCAAAGCCATGAGATAACAGGATAAACAAAAGCTGACATAATTATTACAGAAACACATGTGGATGATGCATGTTGTATTCCATCATTTAAACTGCCAGATCAAAATAATTTCATTATCAGAGCCCTCTCAAAGAACCCTTCCAAAAGTGAATACAACAAAACAATATTTTTTTGTACCATAGGTGTGATTATTCTATATATGCAGCACAGCCAGTACTTATTGATCACACAGAACATGCATTTAAAGGACAGGTTACCATTGTTTATTACTCCCTCCGTTTCATATTATAAGTCATTTGACTTTTTTCCTAGTCAAGTTTGACTAAGTTCATAGAAAAAATTAGCAACATTCAAAATACCAAACTAGTTTCACAAAATCTAACATTGAATATATTTTGATAATATGTTTATTTTGTGTTGAATATACTAATATATTTTTCTATAAACTTGGTCAAACTTGATTAGAAAAAAAGTCAAACGACTTATAATATGAAACAGAGGGAGTACTATATGTCAAAAGTAAATCATCTAAATTTCACCAACTGAAGGGCAAATTTTCTCATTGTCAAACAAGGATAGCTTCACTACGCAGGATAAATGTACACAACTTGAACAAGTCTAGATCAAAATAAATTAAAACAGAACTGACAACACCAGAACCGCATGAAATGTACTTACGAAACACAGGTTACATGATAAAACATTTGCTAACAAAAACCAACCTTAAATTTGCTTCTATCAGTTGATTTCACACGACAAACTAACCCCATTTTAGCTTCCTTTTCTGTTATGTCAACAGAATAAAAATGAGCTGATTGCTTTTCCACCTGGCCACATGCAGCTTTCAATTATTTAGTTGCTAACATCAAGAAAAGAAGCATTGGATGATGGACAGCTAGTTGCCATTACCTACCTTCCTGTGAACAGAGTTTCCAAGCTGGAGCTGAGAAACCATAACCGATCCATTCAATGCCTCCTCTAAAACTGTTGCTGATACGGTTGTCTTTATCGGCACACCAAGTTTGCTGCACATACGTACGCACAGTTAAGAAGAAAAAAAAAGCAGCATAACAAGCTAGTAGCAAACAGTAAAAGAAATATAACATCAGTAAAATGTTTTTACCTGAAAAGAGCAGCAAACACGGTGTTCACGGTATTGAGACTCGATAGGTCCAGCTCCAATTCCTGGCTATCGGCTTCGATGGCCTGAACAAATTGCACCAGTTGCCATAACATGGTAGATTAAAAATTACCAGTTCATGCAAGAACTAACCTCAAATCCTGATGTGTCGTACTGCCGCCTCTTATCGGGATCTGACAGGATGTTGTAGGAGAATGTGACTTCCTGGAACATGTCTGATGCAACAGGATCATCGCCATTCTTGTCCGGGTGGTACCTGCCTCAATTTGCAAGGAAAACTTCTGAAACCATTGCAACATTGATAGCAAAGCAAAAAAAGAAGAACCAATCTCCACACAAGAATGGCTAGCAAGATTAAATGCGCCCCCAAATCCCTCCAAAAGTTCACTAAACAGTAAATAAGCTCCTATAATTTATCTTATCTCGCACGAATTCCCGCGAGACGCGTTCATCTAGGACTAGGATGCCAGAAGGATCGAATGAGGGGGCCGAATCTGAGGGTGAGGCGGGGAGTGCTCACTTGAGCGCCATGCGGCGGAAGGCGCTCTTGATCTCCTGGTCGGTGGCGTTGCGCCCCACGCCGAGCACCTCGTACGGGTCCCTCCTCTGCGCCGCCGTGGCGGCCGGGTCCCCCTTCTCCGACTTGAACGACCCGAACCTCGAACCCGCCAT
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| CDS seq | ATGGCGGGTTCGAGGTTCGGGTCGTTCAAGTCGGAGAAGGGGGACCCGGCCGCCACGGCGGCGCAGAGGAGGGACCCGTACGAGGTGCTCGGCGTGGGGCGCAACGCCACCGACCAGGAGATCAAGAGCGCCTTCCGCCGCATGGCGCTCAAGTACCACCCGGACAAGAATGGCGATGATCCTGTTGCATCAGACATGTTCCAGGAAGTCACATTCTCCTACAACATCCTGTCAGATCCCGATAAGAGGCGGCAGTACGACACATCAGGATTTGAGGCCATCGAAGCCGATAGCCAGGAATTGGAGCTGGACCTATCGAGTCTCAATACCGTGAACACCGTGTTTGCTGCTCTTTTCAGCAAACTTGGTGTGCCGATAAAGACAACCGTATCAGCAACAGTTTTAGAGGAGGCATTGAATGGATCGGTTATGGTTTCTCAGCTCCAGCTTGGAAACTCTGTTCACAGGAAGGTGGAAAAGCAATCAGCTCATTTTTATTCTGTTGACATAACAGAAAAGGAAGCTAAAATGGGGTTAGTTTGTCGTGTGAAATCAACTGATAGAAGCAAATTTAAGTTGCTTTACTTTGAGCTTGAAGAAAATGGTGGCCTGAGCCTTGCTTTGCAGGAAGACAGTGTAAAGACTGGGAAGGTTACTTCTGCTGGGATGTATTTTCTTGGCTTTCCTGTGTATCGTTTTGAACAAAACAACCTGGCAGCTGCTGCAAAGGATCCTGATAGTGCCTTCTTTAAAAGATTGGACAGCTTCCAACCATGTGATATAAATGAACTAAAACCAGGCACACACTTCTTTGCTGTCTATGGTGACAATTTCTTCAGAAGTGTGAACTATACTATAGAGGTTGTATGTGGTGAATCTTTCCCTGCTGAAAAGGAGAAGCTCCAGAGTGTTGAGGCAAAGATACTCACAAAACGAGCAGAGCTATCCAAATTTGAGACCGAGTACAGAGAAGTTTTGGCAAAGTTCACTGAGATGACCAGCAGATACACACAAGAAATGCAAGCAATCGATAATCTTCTGAAGGAAAGGAATGAAATCCATGCGTCCTATACCAACAATTCACCACTGAAGAGGAGTTCAAGCAGGAGTAAAGCTAAATCGCCTTCAAAATTTTCCAAAGGTGAGGAGGAAAACAGTCAGAGAAAGGAAAAGAAAGTGAAAGACCAACCCACGGGTGGATGCAGAAGTGCAGATGAAGATTCAAACGAAAAGAAAACCAAAGAGCGGTTCCCAAAGAAGAAATGGTTAAACATTCCTTTCAAAATTGACAGGAGAAAGCCATGCTGA
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| Protein seq | MAGSRFGSFKSEKGDPAATAAQRRDPYEVLGVGRNATDQEIKSAFRRMALKYHPDKNGDDPVASDMFQEVTFSYNILSDPDKRRQYDTSGFEAIEADSQELELDLSSLNTVNTVFAALFSKLGVPIKTTVSATVLEEALNGSVMVSQLQLGNSVHRKVEKQSAHFYSVDITEKEAKMGLVCRVKSTDRSKFKLLYFELEENGGLSLALQEDSVKTGKVTSAGMYFLGFPVYRFEQNNLAAAAKDPDSAFFKRLDSFQPCDINELKPGTHFFAVYGDNFFRSVNYTIEVVCGESFPAEKEKLQSVEAKILTKRAELSKFETEYREVLAKFTEMTSRYTQEMQAIDNLLKERNEIHASYTNNSPLKRSSSRSKAKSPSKFSKGEEENSQRKEKKVKDQPTGGCRSADEDSNEKKTKERFPKKKWLNIPFKIDRRKPC |
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| Function | Chaperone protein dnaJ 16 [UniProtKB/Swiss-Prot:Q8VXV4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g13060 | LOC_Os06g13060.1 | Chr06 | 7159988 | 7164156 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGGTTCGAGGTTCGGGTCGTTCAAGTCGGAGAAGGGGGACCCGGCCGCCACGGCGGCGCAGAGGAGGGACCCGTACGAGGTGCTCGGCGTGGGGCGCAACGCCACCGACCAGGAGATCAAGAGCGCCTTCCGCCGCATGGCGCTCAAGTACCACCCGGACAAGAATGGCGATGATCCTGTTGCATCAGACATGTTCCAGGAAGTCACATTCTCCTACAACATCCTGTCAGATCCCGATAAGAGGCGGCAGTACGACACATCAGGATTTGAGGCCATCGAAGCCGATAGCCAGGAATTGGAGCTGGACCTATCGAGTCTCAATACCGTGAACACCGTGTTTGCTGCTCTTTTCAGCAAACTTGGTGTGCCGATAAAGACAACCGTATCAGCAACAGTTTTAGAGGAGGCATTGAATGGATCGGTTATGGTTTCTCAGCTCCAGCTTGGAAACTCTGTTCACAGGAAGGTGGAAAAGCAATCAGCTCATTTTTATTCTGTTGACATAACAGAAAAGGAAGCTAAAATGGGGTTAGTTTGTCGTGTGAAATCAACTGATAGAAGCAAATTTAAGTTGCTTTACTTTGAGCTTGAAGAAAATGGTGGCCTGAGCCTTGCTTTGCAGGAAGACAGTGTAAAGACTGGGAAGGTTACTTCTGCTGGGATGTATTTTCTTGGCTTTCCTGTGTATCGTTTTGAACAAAACAACCTGGCAGCTGCTGCAAAGGATCCTGATAGTGCCTTCTTTAAAAGATTGGACAGCTTCCAACCATGTGATATAAATGAACTAAAACCAGGCACACACTTCTTTGCTGTCTATGGTGACAATTTCTTCAGAAGTGTGAACTATACTATAGAGGTTGTATGTGGTGAATCTTTCCCTGCTGAAAAGGAGAAGCTCCAGAGTGTTGAGGCAAAGATACTCACAAAACGAGCAGAGCTATCCAAATTTGAGACCGAGTACAGAGAAGTTTTGGCAAAGTTCACTGAGATGACCAGCAGATACACACAAGAAATGCAAGCAATCGATAATCTTCTGAAGGAAAGGAATGAAATCCATGCGTCCTATACCAACAATTCACCACTGAAGAGGAGTTCAAGCAGGAGTAAAGCTAAATCGCCTTCAAAATTTTCCAAAGGTGAGGAGGAAAACAGTCAGAGAAAGGAAAAGAAAGTGAAAGACCAACCCACGGGTGGATGCAGAAGTGCAGATGAAGATTCAAACGAAAAGAAAACCAAAGAGCGGTTCCCAAAGAAGAAATGGTTAAACATTCCTTTCAAAATTGACAGGAGAAAGCCATGCTGA
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| Protein seq | MAGSRFGSFKSEKGDPAATAAQRRDPYEVLGVGRNATDQEIKSAFRRMALKYHPDKNGDDPVASDMFQEVTFSYNILSDPDKRRQYDTSGFEAIEADSQELELDLSSLNTVNTVFAALFSKLGVPIKTTVSATVLEEALNGSVMVSQLQLGNSVHRKVEKQSAHFYSVDITEKEAKMGLVCRVKSTDRSKFKLLYFELEENGGLSLALQEDSVKTGKVTSAGMYFLGFPVYRFEQNNLAAAAKDPDSAFFKRLDSFQPCDINELKPGTHFFAVYGDNFFRSVNYTIEVVCGESFPAEKEKLQSVEAKILTKRAELSKFETEYREVLAKFTEMTSRYTQEMQAIDNLLKERNEIHASYTNNSPLKRSSSRSKAKSPSKFSKGEEENSQRKEKKVKDQPTGGCRSADEDSNEKKTKERFPKKKWLNIPFKIDRRKPC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.317525 | 0.273115 | 2.543155 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0237800 | RBH | 0.518220 | 0.385300 | 7.255462 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g50760 | RBH | 0.332792 | 0.386398 | 0.801234 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0237800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0009270 | RBH | 0.312451 | 15.814777 | 20.374758 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0009140 | RBH | 0.130221 | 8.050016 | 5.208313 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0009150 | RBH | 1.199847 | 26.144581 | 29.035387 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0009230 | RBH | 0.070439 | 0.531331 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0009270 | RBH | 0.0 | 24.688723 | 17.792627 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0118700 | SBH | 8.6476625 | 8.8374835 | 12.0945165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008850 | RBH | 0.0 | 0.782593 | 1.852717 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0120400 | RBH | 7.294849 | 5.6432065 | 28.0866175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0009320 | RBH | 0.0 | 0.181116 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0009130 | RBH | 0.0 | 14.102526 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0009180 | RBH | 0.0 | 16.245827 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0009250 | RBH | 0.119018 | 0.000000 | 1.789310 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0009070 | RBH | 0.000000 | 12.888350 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008950 | RBH | 0.308576 | 6.496693 | 9.897089 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0009240 | RBH | 0.000000 | 11.619927 | 7.852824 |
