Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g11840 | OGI:06017470 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:6277593-6281865 | ||||||||
| Gene Symbol | TPP8, OsTPP8, OsTPP2 | ||||||||||
| DNA seq | TCAAACTTCTTCAGAAGTCAGAGCTAGCTTAGCAGGGAAGACTGTCATATAGTATATATGATCCGTCGTCAGTGTACTAATTAAACCCTCGGGCGCATCGCTGACGATGATCGCCGAAGCTTCCACTGCACCAATCGAACAAGGAACTCCATGACCTGGAAATTTTAGAGAAATTTACAGCTCAATTTGTTAGCATTTTCTCGCGCACATCGCCATCGCCAAAATGACGCCATGACTGATTTGAACATGAATGTTATTGTTTACTTAACTAATGTAAAAAAAAACTAATTTGAACATGTCATGCTGGATGTTTACATATATATATAGTTAGAGCGACGCTCCGGTGCTTTCTACTTGTAGTATTATACTACAAGTAGAATTGATCTGAATCGTCGGTTCACAAGGGCATATTAGTACATTACTACTTAGTGATTAGGGGTAATGGTGGTATTTGGGATTTTATCTATTCATCTCGCTAGGCACTCGGCGACTGGACGACGCTTCCATTCGCTGCGGCAAATCCTCCCACCACCGTCGATCTCCTCCTGACGGTAGCCATCTCCACTGCTCGGCAAATCCTCGCGCCGCCGGCAGTCTACTCCGGCGGCCATTCTTTCCCCACTCATTCTCCATTTGTCTCCCCATTTTGCCGCGTGCAAGGGCACCATCCGATACATTCCGGCGGCGGCGGCGCCGACGGCCGTCTCGCCAGTACTTCTTTGTTCACCGGTGCTTGCCTGTTTAGATGTTTTTGCAGCTTCTAGTCAGAGTCTTGCCTGTAATCCTTTTCTATCTGTATTCATTAAGTGCATCCTGGACTGTATAACTTATATATACTAGTTCTAATGCTGCAAAAATAACTTATATGTACTAGTTCTAATGCTGCAAAAATATTGTTCGAGGCAACAGGTGTGCCCATGTCCAATTTTTTTTTCTGGTTGTTAAATCAACATGCTGGTCCAAATCAGATTTTCGCCGTGTTTAGTTCCTAACTTTTACTTGAAACTTCCAACTTTTCTATTACATTAAAACTTTTCTATACACACAAACTTTCAACTTTTCCGTCACATAGTTCCAATTTCAACCAAACTTCTAATTTTGGTGTGAACTAAACAGAGCCTCTATGAGCTCATGAATTGGTGGGGCCTTTTTGAAGTCTGAAGTCTGAACTTGAGCAGTAGCAGTAGCAGTAGCAATAGTATGCTTAGGGTGTGTTTAGTTCACGCTAAAATTGGAAGTTTGATTAAAATTGAAACGATGTGACGGAAAAGTTGGAAGTTTGTGTGTGGGGGAAAGTTTTGATGTGATGAAAAAGTTGGAAGTATGAAGAAAAAGTTAGGAACTAAAACAAGCCTTAATGTGACTTGAAGCAATAAGAAAATAATTCTGTTTGACATTTTTATCTGCAACTTTGCTGAACGAACAAGGAGAAAGGTTTTCTGTTAGTGTTCACCATATAAGGAACAAATTCGATCCTACTTAGCACGTATACTTCATGTACATTGGTCACTTCGCCGCGCTGCCACCGGCGCACGTACATGGAGATGCAATCGAAAGCTGTAGCGAGGGCGACATTAGGCAGGCATGCAGGCGATCTAAGATGGCGAGCACGCATCTAACCACATGTAGCGCCAGCACGAGGAGCTCCACGAAGCCCGAGGCTGGGCATCGTACTGGACCAGCTAGCCCCATGCGGCAGTCCACGCCGGCGAGGTGTGCTGCGAAGTCATGCGAGTTGACGGCGTTGACAAGAGCCAACGCCACAGCTGCCGTGAACACCACGGTCAGGAGCATCGTCACGAACACGTGCGCCCCGGCGTTGGTGTACTTCTATCGAGTGGCGGAGGCGGCGGCAGGGAGGAGATACTCGGCGTCGTCTCCGGATGCAATTTGGGGGAGTTATGCGATTCTCTTTGGCCGACGTGAGGAAAGATTGAGTTGAGTACGGCTAGGGCCAGTGATTGTAAATGATGATTATACCCCTCCACTAATATTTGTTCTTGGACAATAATAGCCATCCACGATTCTACTACCATTAAATAAGGTGGTAGTAGAAATTGATCTAAACCCTTTGATCAAATGAGATTAGTGGTTCAGATTATTTTCTACTATAAGTAGAAAGCACCGGAGTAGAACTCATATAGTTATATATCAAAGACCATGTGTACCTCTGCTGGGTCCTGGAGAGAGTACGAGGCGTCAGTCTCCTTGGCACACTTGGAGACAAGAATTCCCAACCCTTGACCTCTCTTTCTCAACACCTAATAATTAATTAACCCAAAAAAAAACCCAAATTTATACTTTTGAAACGAACAAAAACAGTCGAAATCACCAGCTGCATGTACGTGAAATTAAACATGTATATATTTTTCACCTTGAAAGCATCTTCGTCGGTCCGGTCGTCTCCGATGTACACCGGCAGGACGTCGCGGCGGTCGTCGTCGAATCCTACGAGAGATGGAACGAACAGCAAGCGGACAACCCGTGAGCGATCAGAAGGAGAAGATGTTTTTTCACTGGCGGCGAGAGGAGGAAGACGACGGAGAAAGAAATTGATTGATCTTACCGAGAGATTTCAGCAAGAACTCCACCGCCTTGCCCTTGTCCCACATGATCGACGGCCGGATCTCCAGGACCTGCGTGATCAAGTTCATCGTCGTTAGCCATCGTCGTCGTCAGAGTATCGAGCTCGCCGTTGATTAATTTGGTTGATATGCATCAATTAATCACCTTTCTTCCTTGGGTGAGTTTGAGCTCGGGGTAGTCCCGGAGCACGGCCTTCACTTGCTCTGCCAACGGATTCCATCTCTGCAAGAACACTGGCTGATTAATTATAGTTTGATCTCGAAACTAACCAAGATCGATTAATTATATTGTAATGCAAGAACTGGATTGATTAATTAATCAATTACTAATTACCTTCTCATCGACGCATCTGAAGTGCACGGAGAGGCAGAACTTGTTGTTCTCCACTCTGGCCCCAGGCGTGCTCTTCGTCTTCTCCATCAAAGCCTTGTAAGCCTGTCATTTTTTTTTGTTACAAAAATAAGTGAAAAAAAATTCGTAGCTGGTAAGTTCCTCATGGCTCAACTAACTAAGAATTATTACAGCTAAGACATGTTGATTAGTTAGTTGATTAGCATGTCTAATTAGTTGATTAGTTAGTTAATCACCTTGTTGATCACCGGGAGGAACTCGCGAGCTGGCTGCAAGAGGATCTTGGTGTCTTCTTCCTCCTGGAGAATGGGAGGAGTAGCAGCTAGTAAGTACAAGAATAACAATGGAGTGTGAAGCAAGCAGAAGAAGCAATGATTGCGAATGTGGTGGTGATGGCGATTTGGGTAAGTTGTTGTGTGGATGAAGCGATAAGAGTGCGACAGCTGCTGACGTACGTTGGAGCTGGGGCCCTTGATGTCCATGCCATGGCTGCCGGCGTAGTAGAGCTCCGGGAGGCCGACGAAGCTCTGCACCTTGTCGACGCAGCGCCCGGTCACGATCGCCGCCGGGAAGTGCTCCGCCACGTCGCGCACGGCCGCCCTCATCTGAAGAGAAAGGAGATGTCAGCGTCCGTCGCGCATGGTGTTCGATCGGTTGGTGATCGTGGTGCAGTGGATTGTTAGTATTGACCTCGTCGGACATGAAGGCCATGTCGGGGTCGGCGACGATGGGGGAGAGGGTGCCGTCGTAGTCGAGGAACACGACGACGCGCTTCCCGCTCGCCGCCGCGGCCACCTGCTCGAAGCTGCCCAGCGCCGACGGGTGCTTCCTCTGCTGCGTACAAACGACGACGCGGCTCGAGCTCGATCACAACGCTAGCTAGGCACACACAACCAGAGGAGCGCGAGCGACGACTCACCGTCCACGCGTCGTACTCGGCGTCGACCGCGGCGGCGGCGGGCCGTGTCGGCGACGACGCGCGCATGGCCTCGACGACCCAGCTGGCGCACGGCCTGATAGCTGGCACCGGCGCCACGTGCGCCACCACCGCGGCCTGGTACGCCGCGCCGCCGCCGCCGAGCATGGAGGACGCCGACACGGCCGCGGCGCCACGGCACGCGAAGAGCGGCGCGCGGCCGGATGACCCCGGCATGGCCGCGGCCGCCGCGATGTCCGGCATCACCACGTCCTGGTTCGTCATGGCACGCGCCGCGCCGCCGCCGCCGCCGCCTGGCTGGACTAAGCTAGCTACTACCACTCGAGCCGCGCGCGCCACTAGCGGTGGTGGTGGCCGGAGCGCGCGTGGGCGTGGCGGTTTTGTTTCGGTGCGCGGCGA
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| CDS seq | ATGACGAACCAGGACGTGGTGATGCCGGACATCGCGGCGGCCGCGGCCATGCCGGGGTCATCCGGCCGCGCGCCGCTCTTCGCGTGCCGTGGCGCCGCGGCCGTGTCGGCGTCCTCCATGCTCGGCGGCGGCGGCGCGGCGTACCAGGCCGCGGTGGTGGCGCACGTGGCGCCGGTGCCAGCTATCAGGCCGTGCGCCAGCTGGGTCGTCGAGGCCATGCGCGCGTCGTCGCCGACACGGCCCGCCGCCGCCGCGGTCGACGCCGAGTACGACGCGTGGACGCAGAGGAAGCACCCGTCGGCGCTGGGCAGCTTCGAGCAGGTGGCCGCGGCGGCGAGCGGGAAGCGCGTCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACATGGCCTTCATGTCCGACGAGATGAGGGCGGCCGTGCGCGACGTGGCGGAGCACTTCCCGGCGGCGATCGTGACCGGGCGCTGCGTCGACAAGGTGCAGAGCTTCGTCGGCCTCCCGGAGCTCTACTACGCCGGCAGCCATGGCATGGACATCAAGGGCCCCAGCTCCAACGAGGAAGAAGACACCAAGATCCTCTTGCAGCCAGCTCGCGAGTTCCTCCCGGTGATCAACAAGGCTTACAAGGCTTTGATGGAGAAGACGAAGAGCACGCCTGGGGCCAGAGTGGAGAACAACAAGTTCTGCCTCTCCGTGCACTTCAGATGCGTCGATGAGAAGAGATGGAATCCGTTGGCAGAGCAAGTGAAGGCCGTGCTCCGGGACTACCCCGAGCTCAAACTCACCCAAGGAAGAAAGGTCCTGGAGATCCGGCCGTCGATCATGTGGGACAAGGGCAAGGCGGTGGAGTTCTTGCTGAAATCTCTCGGATTCGACGACGACCGCCGCGACGTCCTGCCGGTGTACATCGGAGACGACCGGACCGACGAAGATGCTTTCAAGGTGTTGAGAAAGAGAGGTCAAGGGTTGGGAATTCTTGTCTCCAAGTGTGCCAAGGAGACTGACGCCTCGTACTCTCTCCAGGACCCAGCAGAGAAGTACACCAACGCCGGGGCGCACGTGTTCGTGACGATGCTCCTGACCGTGGTGTTCACGGCAGCTGTGGCGTTGGCTCTTGTCAACGCCGTCAACTCGCATGACTTCGCAGCACACCTCGCCGGCGTGGACTGCCGCATGGGGCTAGCTGGTCCAGTACGATGCCCAGCCTCGGGCTTCGTGGAGCTCCTCGTGCTGGCGCTACATGTGGTTAGATGCGTGCTCGCCATCTTAGATCGCCTGCATGCCTGCCTAATGTCGCCCTCGCTACAGCTTTCGATTGCATCTCCATGTCATGGAGTTCCTTGTTCGATTGGTGCAGTGGAAGCTTCGGCGATCATCGTCAGCGATGCGCCCGAGGGTTTAATTAGTACACTGACGACGGATCATATATACTATATGACAGTCTTCCCTGCTAAGCTAGCTCTGACTTCTGAAGAAGTTTGA
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| Protein seq | MTNQDVVMPDIAAAAAMPGSSGRAPLFACRGAAAVSASSMLGGGGAAYQAAVVAHVAPVPAIRPCASWVVEAMRASSPTRPAAAAVDAEYDAWTQRKHPSALGSFEQVAAAASGKRVVVFLDYDGTLSPIVADPDMAFMSDEMRAAVRDVAEHFPAAIVTGRCVDKVQSFVGLPELYYAGSHGMDIKGPSSNEEEDTKILLQPAREFLPVINKAYKALMEKTKSTPGARVENNKFCLSVHFRCVDEKRWNPLAEQVKAVLRDYPELKLTQGRKVLEIRPSIMWDKGKAVEFLLKSLGFDDDRRDVLPVYIGDDRTDEDAFKVLRKRGQGLGILVSKCAKETDASYSLQDPAEKYTNAGAHVFVTMLLTVVFTAAVALALVNAVNSHDFAAHLAGVDCRMGLAGPVRCPASGFVELLVLALHVVRCVLAILDRLHACLMSPSLQLSIASPCHGVPCSIGAVEASAIIVSDAPEGLISTLTTDHIYYMTVFPAKLALTSEEV |
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| Function | Probable trehalose-phosphate phosphatase 8 [UniProtKB/Swiss-Prot:Q0DDI1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g11840 | LOC_Os06g11840.1 | Chr06 | 6277593 | 6281865 | - | MSU_osa1r7 | ||
| CDS seq | ATGACGAACCAGGACGTGGTGATGCCGGACATCGCGGCGGCCGCGGCCATGCCGGGGTCATCCGGCCGCGCGCCGCTCTTCGCGTGCCGTGGCGCCGCGGCCGTGTCGGCGTCCTCCATGCTCGGCGGCGGCGGCGCGGCGTACCAGGCCGCGGTGGTGGCGCACGTGGCGCCGGTGCCAGCTATCAGGCCGTGCGCCAGCTGGGTCGTCGAGGCCATGCGCGCGTCGTCGCCGACACGGCCCGCCGCCGCCGCGGTCGACGCCGAGTACGACGCGTGGACGCAGAGGAAGCACCCGTCGGCGCTGGGCAGCTTCGAGCAGGTGGCCGCGGCGGCGAGCGGGAAGCGCGTCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACATGGCCTTCATGTCCGACGAGATGAGGGCGGCCGTGCGCGACGTGGCGGAGCACTTCCCGGCGGCGATCGTGACCGGGCGCTGCGTCGACAAGGTGCAGAGCTTCGTCGGCCTCCCGGAGCTCTACTACGCCGGCAGCCATGGCATGGACATCAAGGGCCCCAGCTCCAACGAGGAAGAAGACACCAAGATCCTCTTGCAGCCAGCTCGCGAGTTCCTCCCGGTGATCAACAAGGCTTACAAGGCTTTGATGGAGAAGACGAAGAGCACGCCTGGGGCCAGAGTGGAGAACAACAAGTTCTGCCTCTCCGTGCACTTCAGATGCGTCGATGAGAAGAGATGGAATCCGTTGGCAGAGCAAGTGAAGGCCGTGCTCCGGGACTACCCCGAGCTCAAACTCACCCAAGGAAGAAAGGTCCTGGAGATCCGGCCGTCGATCATGTGGGACAAGGGCAAGGCGGTGGAGTTCTTGCTGAAATCTCTCGGATTCGACGACGACCGCCGCGACGTCCTGCCGGTGTACATCGGAGACGACCGGACCGACGAAGATGCTTTCAAGGTGTTGAGAAAGAGAGGTCAAGGGTTGGGAATTCTTGTCTCCAAGTGTGCCAAGGAGACTGACGCCTCGTACTCTCTCCAGGACCCAGCAGAGAAGTACACCAACGCCGGGGCGCACGTGTTCGTGACGATGCTCCTGACCGTGGTGTTCACGGCAGCTGTGGCGTTGGCTCTTGTCAACGCCGTCAACTCGCATGACTTCGCAGCACACCTCGCCGGCGTGGACTGCCGCATGGGGCTAGCTGGTCCAGTACGATGCCCAGCCTCGGGCTTCGTGGAGCTCCTCGTGCTGGCGCTACATGTGGTTAGATGCGTGCTCGCCATCTTAGATCGCCTGCATGCCTGCCTAATGTCGCCCTCGCTACAGCTTTCGATTGCATCTCCATGTCATGGAGTTCCTTGTTCGATTGGTGCAGTGGAAGCTTCGGCGATCATCGTCAGCGATGCGCCCGAGGGTTTAATTAGTACACTGACGACGGATCATATATACTATATGACAGTCTTCCCTGCTAAGCTAGCTCTGACTTCTGAAGAAGTTTGA
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| Protein seq | MTNQDVVMPDIAAAAAMPGSSGRAPLFACRGAAAVSASSMLGGGGAAYQAAVVAHVAPVPAIRPCASWVVEAMRASSPTRPAAAAVDAEYDAWTQRKHPSALGSFEQVAAAASGKRVVVFLDYDGTLSPIVADPDMAFMSDEMRAAVRDVAEHFPAAIVTGRCVDKVQSFVGLPELYYAGSHGMDIKGPSSNEEEDTKILLQPAREFLPVINKAYKALMEKTKSTPGARVENNKFCLSVHFRCVDEKRWNPLAEQVKAVLRDYPELKLTQGRKVLEIRPSIMWDKGKAVEFLLKSLGFDDDRRDVLPVYIGDDRTDEDAFKVLRKRGQGLGILVSKCAKETDASYSLQDPAEKYTNAGAHVFVTMLLTVVFTAAVALALVNAVNSHDFAAHLAGVDCRMGLAGPVRCPASGFVELLVLALHVVRCVLAILDRLHACLMSPSLQLSIASPCHGVPCSIGAVEASAIIVSDAPEGLISTLTTDHIYYMTVFPAKLALTSEEV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0222100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g51680 | RBH | 0.000000 | 0.0 | 0.748828 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0222100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008370 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008230 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008230 | RBH | 0.0 | 0.0 | 0.947324 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008230 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0104600 | RBH | 0.04491 | 0.3647195 | 64.5593185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0007970 | RBH | 0.0 | 0.0 | 0.217363 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0104900 | RBH | 0.073989 | 0.4119355 | 2.824329 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008310 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008370 | RBH | 0.0 | 0.0 | 0.203007 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0008160 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008070 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008340 | RBH | 0.0 | 0.0 | 0.0 |
