Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g10340 | OGI:06015070 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:5308992-5310602 | ||||||||
| Gene Symbol | ATG12, OsATG12, Atg12 | ||||||||||
| DNA seq | ATGGCCGCGGTCGCCGCCGAGCAGAAGAAAGGTTCGTCCCTTCCTCTTTCCTCGTCCTTCAGCGTTCGTTTCTTCTGCTTAACCCCATCTCGTGGTTGCGCAATCGCAGTCGTGGTGCACTTCCGGTCGACGGGCAACGCGCCGCAGCTGAAGCAGTCCAAGTTCAAGGTGCGGGGCTTCTCTTGTCCTCTTCTTGTTGAATCTTTGCTCCCTGCTTGCACGATTCCCACATGTTGTATCGTCTGATGCCGATTATTGTTACTGTAATTTCGCAATGATCTTGCGTTAAAGCGAATGTGTAGCGCGCTAGTTCAGCCTAGGCCGATTAAACCAGCAGATTAAAAATGTAGTTAATCGAGCCACGAAATATCAGTTTGCTTTTGTGTAGAGATGGAAGAACTCGTATTTGGGGGGACTATGTTGTAATACCCTAGAAAAATGTTGTTAGGTGAGGCATCCTGCAGCAACGTGGCCTTCATTGTATCCATCAGGAGACAGGATTTTGAAAAAGGGGGGGGGGGGGAAGGTGATTGATTGGCTCGTTGAATTTTTGATGATTTTTATAATGTCTATTTCATAGTATTAATAGTAGTATGCACAAGAAATAAACGTGCTGATTCAGTCAAAGATTTTTTTAGAAAATAGTATACCTGGAGTAACTTCACGATGTCGCCTCATGATATATTGGATCTAGCGATGGCAATGGAGCCCCGTTGCCACCCCGGATTTGATCAGGTTATTTTCGGTGGTGTCATATGGTGTTTCATCTTTTTTTTTTTAGTCTAGTATGGAAGATATGTACATGGCTTGTAGAGGGTGGCACCATGTAGTTTTGATGCCCTAGTCAAGTATCAGATGCATTAGTATTTTGTGGTTCTACGGACATAATTTTCTGTTCAATTTGTATGAGACTATGAGTTCCTTGTTTAATGAGCGAGTAAATAAATTGCCCTGGAACTCATAGTGAAATGATGGTAACTTGTTATGGTTCATCCGTTCATGCAATTGGAAGCTGGAATTACACATAGGCTTTTGCTTTTGCATTTTCAGATTGGTGGAAACGAGAAATTTCTGAAGATCATTGACTTTCTTCGCCGACAAATTCACCAGGATACAGTGGTACAAATATAGCTTGTAGGTTCATCTGAGTTGAATCAACATGCTTAGAAATTTGTTGATTTTTTTTTGTTTTACCTGCAGTTTCTCTATGTGAACAGTGCATTTTCACCAAATCCAGATGAGTTGATAATCGACCTATACAATGTAAGCTTTGATGTCCGTGCTATCCGTTCTTACATATCAATGTACTGCCAAATAACCTTCAGCAGAGTGCATTATCATTTTTTTAAGAGAACTTCAAAACCATTTTGACATCAAGGCTTGAAAGTTAATTGTAGGTGTAGCATACTGACTTGGTTTCTAAACTAATTACTGATGAATGATACTACAGTATGAGTAATTACATAACCTAGTGATATTATTCTGGTATCGATGTCACATTTGGTGAATGATTAAAGGACTAACACTAAACATTTATGTTTTGCATCAAAGAACTTTGGAATCGACGGGCAACTGGTGGTTAACTATGCATCATCGATGGCATGGGGCTGA
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| CDS seq | ATGGCCGCGGTCGCCGCCGAGCAGAAGAAAGTCGTGGTGCACTTCCGGTCGACGGGCAACGCGCCGCAGCTGAAGCAGTCCAAGTTCAAGATTGGTGGAAACGAGAAATTTCTGAAGATCATTGACTTTCTTCGCCGACAAATTCACCAGGATACAGTGTTTCTCTATGTGAACAGTGCATTTTCACCAAATCCAGATGAGTTGATAATCGACCTATACAATAACTTTGGAATCGACGGGCAACTGGTGGTTAACTATGCATCATCGATGGCATGGGGCTGA |
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| Protein seq | MAAVAAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG |
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| Function | Ubiquitin-like protein ATG12 [UniProtKB/Swiss-Prot:Q69NP0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g10340 | LOC_Os06g10340.1 | Chr06 | 5308992 | 5310602 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGCGGTCGCCGCCGAGCAGAAGAAAGTCGTGGTGCACTTCCGGTCGACGGGCAACGCGCCGCAGCTGAAGCAGTCCAAGTTCAAGATTGGTGGAAACGAGAAATTTCTGAAGATCATTGACTTTCTTCGCCGACAAATTCACCAGGATACAGTGTTTCTCTATGTGAACAGTGCATTTTCACCAAATCCAGATGAGTTGATAATCGACCTATACAATAACTTTGGAATCGACGGGCAACTGGTGGTTAACTATGCATCATCGATGGCATGGGGCTGA
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| Protein seq | MAAVAAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.151555 | 1.269454 | 0.811645 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0205000 | RBH | 1.458676 | 0.906156 | 5.359702 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0205000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0007270 | SBH | 0.382840 | 6.294585 | 2.910519 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0007080 | RBH | 0.0 | 0.887299 | 1.113489 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0007120 | SBH | 1.018080 | 5.389510 | 1.416468 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0007190 | SBH | 0.0 | 0.080583 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0007090 | RBH | 0.000000 | 2.961487 | 1.428974 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006880 | RBH | 0.0 | 0.000000 | 0.376599 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0088900 | RBH | 6.4815165 | 7.6852395 | 10.614708 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0007280 | RBH | 0.276671 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0007150 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0007200 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0007220 | RBH | 0.000000 | 0.000000 | 1.703355 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0007070 | RBH | 0.000000 | 1.189252 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006950 | SBH | 0.874735 | 1.459327 | 0.285933 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0007220 | SBH | 0.295100 | 0.0 | 0.948728 |
